Chang-Jun Liu

Biology Department, 463
Brookhaven National Laboratory
Upton, NY 11973-5000

tel: (631) 344-2966
fax: (631) 344-3407
cliu@bnl.gov

The Group:
Chang-Jun Liu 344-2966
Mohammad Wadud Bhuiya 344-4269
Jin-Ying Gou 344-4269
Yuchen Miao 344-4269


Research Interests:

    The research interests of our group are centered on understanding phenylpropanoid metabolism and plant cell wall lignocellulosic formation and modification.

    Phenylpropanoid biosynthetic pathway in vascular plants leads to the formation of a variety of organic compounds that impart plant structural integrity (cell wall polymer lignin), or modulate plant defense responses and plant-environmental interactions (e.g., flavonoids and isoflavonoids). These phenolic and polyphenolic metabolites in vascular plants constitute a major sink of organic carbon. Particularly, lignin, one major class of phenylpropanoids, together with cell wall polysaccharides in vascular plants constitutes the most abundant renewable biomass (cell wall lignocelluloses) on earth. The non-cellulosic polysaccharide and lignin polymers in cell wall afford a variety of biochemical modifications. Such modification likely changes the physical and chemical properties of cell wall structure and negatively impacts cell wall biomass degradability.

    Through the integrated biochemical genomics/genetics approaches, our group is systemically characterizing the biochemical functions and biological roles of the enzymes involved in phenylpropanoid biosynthesis and cell wall lignocellulosic modifications. We are particularly focusing on the enzymes involved in lignocellulosic O-methylation and O-acylesterification. By employing X-ray crystallographic strategy, we are also exploring the structure-function relationships of these key modification enzymes; meanwhile, we are utilizing information of the crystal structures of phenylpropanoid biosynthetic enzymes to design novel catalysts for the genetic modification of lignocellulosic structural properties. The goal of our group is to apply the knowledge gained from these studies towards reducing the recalcitrance of bioenergy crops for biofuel production, enhancing plant feedstock biomass production, and engineering value-added chemicals.

Former group member:
Cheng Wang (Biotechnology and Bioengineering Center, Medical College of Wisconsin)


References:
Baerson S.R., Dayan F.E., Rimando A.M., Dhammika Nanayakkara N.P., Liu C.J., Schroder J., Fishbein M., Pan Z., Kagan I.A., Pratt, L.H., Cordonnier-Pratt M.-M. and Duke S.O.
A functional genomics investigation of allelochemical biosynthesis in Sorghum biocolor root hairs.
J. Biol. Chem. 283(6):3231-47 (2008).  PubMed  
Bhuiya M.W. and Liu C.-J.
A cost-effective colorimetric assay for phenolic O methyltransferases and characterization of caffeate 3-O-methyltransferases from Populus trichocarpa.
Analytical Biochemistry 2008 Sep 25. [Epub ahead of print].  PubMed  
Gou J., Park S., Yu X.-H., Miller L.M. and Liu C.-J.
Compositional characterization and imaging of “wall-bound” acylesters of Populus trichocarpa reveal differential accumulation of acyl molecules in normal and reactive woods.
Planta (in press).
Yu X-H., Chen M.-H. and Liu C.-J.
Nucleocytoplasmic-localized acyltransferases catalyze the malonylation of 7-O-glycosidic (iso)flavones in Medicago truncatula.
Plant Journal, 55(3):382-396 (2008).  PubMed  
Kao T., Liu C.-J., Yu X.-H., Young L., Connor D., Dilmanian A., Parham C., Reaney M. and Zhong, Z.
Characterization of diffraction enhanced imaging contrast in plants.
Nucl. Instru. Meth. Phys. Res. A 582(1):208-211 (2007).
Liu C.-J., Wang C., Noel J. P. and Dixon, R. A.
Biochemical and structural bases for (iso)flavonoid biosynthetic diversity.
In: Biotechnology and Sustainable Agriculture 2006 and Beyond (Z. Xu, J. Li, Y. Xue, and W. Yang, eds.), Springer-Verlag, The Netherlands, pp.231-234 (2007).
Naoumkina M., Farag M.A., Sumner L.W., Tang Y., Liu C.-J. and Dixon, R.A.
Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula.
Proc. Natl. Acad. Sci. USA 104(46): 17909-17915 (2007). PubMed  
Schulz R., Zhang Y.-B., Liu C.-J. and Freimuth P.
Thiamine diphosphate binds to intermediates in the assembly of adenovirus fiber knob trimers in Escherichia coli.
Protein Sci. 16(12):2684-2693 (2007). PubMed  
Deavours B.E., Liu C.-J., Naoumkina M., Tang Y., Farag M.A., Sumner L.W., Noel J.P. and Dixon R.A.
Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula.
Plant Mol Biol 62(4-5), 715-733 (2006).   PubMed  
Coiner H., Schröder G., Wehinger E., Liu C.-J., Noel J.P., Schwab W. and Schröder J.
Methylation of sulfhydryl groups: a new function in a family of small molecule plant O-methyltransferases.
Plant J 46(2), 193-205 (2006).   PubMed  
Liu C.-J., Deavours B.E., Richard S.B., Ferrer J.L., Blount J.W., Huhman D., Dixon R.A. and Noel J.P.
Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses.
Plant Cell 18(12), 3656-3669 (2006).   PubMed   Full Text
Liu C.-J. and Noel J.P.
Flavonoids: recent advances in molecular biology, biochemistry, pharmaceutical applications and metabolic engineering.
In: Plant Genetic Engineering Vol. 7: Metabolic Engineering and Molecular Farming, (Ed. Jaiwal P.K.) Studium Press, Houston, pp 225-259 (2006).
Yu X.-H. and Liu C.-J.
Development of an analytical method for genome-wide functional identification of plant acyl-coenzyme A-dependent acyltransferases.
Anal Biochem 358(1), 146-148 (2006).   PubMed  
Liu C.-J., Huhman D., Sumner L.W. and Dixon R.A.
Regiospecific hydroxylation of isoflavones by CYP81E enzymes in Medicago truncatula.
Plant J 36, 471-484 (2003).   PubMed
Dixon R.A., Achnine L., Kota P., Liu C.-J., Reddy M.K.S. and Wang L.
The phenylpropanoid pathway and plant defense- a genomics perspective.
Mol Plant Pathology 3(5), 371-390 (2002).   Abstract   Full Text
Liu C.-J. and Dixon R.A.
Directing metabolic flux toward engineered isoflavone nutraceuticals in transgenic Arabidopsis.
In: Plant Biotechnology 2002 and Beyond, (Ed, Vasil I.K.), Kluwer Academic Publishers, pp 485-490 (2003).
Liu C.-J., Blount J.W., Steele C.L. and Dixon R.A.
Bottlenecks for the metabolic engineering of isoflavone glycoconjugates in Arabidopsis.
Proc Natl Acad Sci USA 99, 14578-14583 (2002).  PubMed   Full Text
Liu C.-J. and Dixon R.A.
Elicitor-induced association of isoflavone O-methyltransferase with endomembranes prevents formation and 7-O-methylation of daidzein during isoflavonoid phytoalexin biosynthesis.
Plant Cell 13, 2643-2658 (2001).   PubMed   Full Text
Tan X.P., Liang W.Q., Liu C.-J., Luo P., Heinstein P. and Chen X.Y.
Expression pattern of (+)-delta-cadinene synthase genes and biosynthesis of sesquiterpene aldehydes in plants of Gossypium arboreum L.
Planta 210(4), 644-651 (2000).   PubMed
Chen D.H., Liu C.-J., Ye H.C., Li G.F., Liu B.Y., Meng Y.L. and Chen X.Y.
Ri-mediated transformation of Artemisia annua with a recombined farnesyl diphosphate synthase gene for artemisinin production.
Plant Cell Tissue and Organ Culture 57, 157-162 (1999).
Liu C.-J., Heinstein P. and Chen X.Y.
Expression pattern of genes encoding farnesyl diphosphate synthase and sesquiterpene cyclase in cotton suspension-cultured cells treated with fungal elicitors.
Mol Plant Microbe Interact 12(12), 1095-1104 (1999).   PubMed
Liu C.-J. and Hou S.S.
Regulation of saponin and polysaccharide biosynthesis in Panax ginseng suspended cells responding to the fungal elicitors.
Acta Biologiae Experimentalis Sinica 25, 13-19 (1999).
Meng Y.L., Jia J.W., Liu C.-J., Liang W.Q., Heinstein P. and Chen X.Y.
Coordinated accumulation of (+)-delta-cadinene synthase mRNAs and gossypol in developing seeds of gossypium hirsutum and a new member of the cad1 family from G. arboreum.
J Nat Prod 62(2), 248-252 (1999).   PubMed
Liu C.-J., Meng Y.L., Hou S.S. and Chen X.Y.
Cloning and sequencing of a cDNA encoding farnesyl pyrophosphate synthase from Gossypium arboreum and its expression pattern in developing cotton seeds of G. hirsutum c.v. Sumian-6.
Acta Botanica Sinica 24(8), 703-710 (1998).
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