| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
|---|---|---|---|---|---|---|---|---|---|---|
| 201234 | hypothetical | YPO0316 | hypothetical protein Similar to many proteins of unknown function e.g. Escherichia coli hypothetical protein YjbN SW:YJBN_ECOLI (P32695) (330 aa) fasta scores: E(): 0, 78.2% id in 316 aa. Note the possible alternative translational start site at codon 27 | genbank | 16120654 | NP_403967.1 | 345 | 323066 | 324103 | |
| 201235 | pspG | hypothetical | YPO0318 | phage shock protein G coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia | genbank | 16120655 | NP_403968.1 | 72 | 324619 | 324837 |
| 201236 | qor | hypothetical | YPO0319 | quinone oxidoreductase Similar to Escherichia coli quinone oxidoreductase Qor SW:QOR_ECOLI (P28304) (327 aa) fasta scores: E(): 0, 73.4% id in 327 aa | genbank | 16120656 | NP_403969.1 | 327 | 325182 | 326165 |
| 201237 | dnaB | hypothetical | YPO0320 | replicative DNA helicase unwinds double stranded DNA | genbank | 16120657 | NP_403970.1 | 468 | 326497 | 327903 |
| 201238 | alr | hypothetical | YPO0321 | alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer | genbank | 16120658 | NP_403971.1 | 359 | 328000 | 329079 |
| 201239 | tyrB | hypothetical | YPO0322 | aspartate aminotransferase catalyzes the formation of L-glutamate and oxaloacetate from L-aspartate and 2-oxoglutarate | genbank | 16120659 | NP_403972.1 | 397 | 329265 | 330458 |
| 201240 | hypothetical | YPO0323 | hypothetical protein Similar to Escherichia coli hypothetical protein YjbR SW:YJBR_ECOLI (P32699) (118 aa) fasta scores: E(): 1.6e-27, 57.4% id in 115 aa | genbank | 16120660 | NP_403973.1 | 119 | 330985 | 331344 | |
| 201241 | uvrA | hypothetical | YPO0324 | excinuclease ABC subunit A The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion ha | genbank | 16120661 | NP_403974.1 | 947 | 331437 | 334280 |
| 201242 | ssb | hypothetical | YPO0325 | single-strand DNA-binding protein binds to single stranded DNA and PriA helcase facilitate replication restart | genbank | 16120662 | NP_403975.1 | 182 | 334738 | 335286 |
| 201243 | hypothetical | YPO0326 | hypothetical protein Similar to Escherichia coli hypothetical protein YiiL SW:YIIL_ECOLI (P32156) (104 aa) fasta scores: E(): 0, 77.7% id in 103 aa | genbank | 16120663 | NP_403976.1 | 104 | 335533 | 335847 | |
| 201244 | hypothetical | YPO0327 | probable alcohol dehydrogenase Similar to Bacillus methanolicus NAD-dependent methanol dehydrogenase Mdh SW:MEDH_BACMT (P31005) (380 aa) fasta scores: E(): 0, 42.9% id in 378 aa and to Escherichia coli probable alcohol dehydrogenase YiaY SW:ADH2_ECOLI (P37686) (382 aa) fasta scores: E(): 0, 43.6% id in 376 aa | genbank | 16120664 | NP_403977.1 | 382 | 335861 | 337009 | |
| 201245 | rhaD | hypothetical | YPO0328 | rhamnulose-1-phosphate aldolase Similar to Escherichia coli rhamnulose-1-phosphate aldolase RhaD SW:RHAD_ECOLI (P32169) (274 aa) fasta scores: E(): 0, 68.4% id in 272 aa | genbank | 16120665 | NP_403978.1 | 274 | 337076 | 337900 |
| 201246 | rhaA | hypothetical | YPO0329 | L-rhamnose isomerase catalyzes the formation of L-rhamnulose from L-rhamnose | genbank | 16120666 | NP_403979.1 | 418 | 337913 | 339169 |
| 201247 | rhaB | hypothetical | YPO0330 | rhamnulokinase Similar to Escherichia coli rhamnulokinase RhaB SW:RHAB_ECOLI (P32171) (489 aa) fasta scores: E(): 0, 62.9% id in 483 aa | genbank | 16120667 | NP_403980.1 | 485 | 339166 | 340623 |
| 201248 | hypothetical | YPO0331 | hypothetical protein No significant database hits | genbank | 16120668 | NP_403981.1 | 60 | 340646 | 340828 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201249 | rhaS | hypothetical | YPO0332 | L-rhamnose operon regulatory protein Similar to Escherichia coli L-rhamnose operon regulatory protein RhaS SW:RHAS_ECOLI (P09377) (278 aa) fasta scores: E(): 0, 60.0% id in 270 aa | genbank | 16120669 | NP_403982.1 | 273 | 341050 | 341871 |
| 201250 | rhaR | hypothetical | YPO0333 | L-rhamnose operon transcriptional activator Similar to Escherichia coli L-rhamnose operon transcriptional activator RhaR SW:RHAR_ECOLI (P09378) (312 aa) fasta scores: E(): 0, 54.0% id in 272 aa | genbank | 16120670 | NP_403983.1 | 290 | 342004 | 342876 |
| 201251 | rhaT | hypothetical | YPO0334 | L-rhamnose-proton symport protein Similar to Escherichia coli L-rhamnose-proton symport protein RhaT SW:RHAT_ECOLI (P27125) (344 aa) fasta scores: E(): 0, 79.9% id in 343 aa | genbank | 16120671 | NP_403984.1 | 344 | 343025 | 344059 |
| 201252 | hypothetical | YPO0335 | hypothetical protein Doubtful CDS with no significant database hits | genbank | 16120672 | NP_403985.1 | 88 | 344213 | 344479 | |
| 201253 | hypothetical | YPO0337 | hypothetical protein No significant database hits | genbank | 16120673 | NP_403986.1 | 141 | 344915 | 345340 | |
| 201254 | hypothetical | YPO0338 | hypothetical protein No significant database hits | genbank | 16120674 | NP_403987.1 | 55 | 345570 | 345737 | |
| 201255 | hypothetical | YPO0339 | enhancing factor (viral) Significantly similar to many viral enhancing proteins important for the invasion of the cells of the insect midgut e.g. Pseudalatia unipuncta granulosis virus (PuGV) viral enhancing factor Vef SW:VEF_GVPU (P41723) (901 aa) fasta scores: E(): 1.5e-20, 25.2% id in 869 aa and to Lymantria dispar multicapsid nuclear polyhedrosis virus enhancin TR:O37353 (EMBL:AF019970) (782 aa) fasta scores: E(): 1.2e-24, 24.5% id in 783 aa | genbank | 16120675 | NP_403988.1 | 856 | 345752 | 348322 | |
| 201256 | hypothetical | YPO0341 | putative TetR-family regulatory protein Similar to Escherichia coli hypothetical protein YjdC SW:YJDC_ECOLI (P36656) (191 aa) fasta scores: E(): 0, 64.4% id in 191 aa | genbank | 16120676 | NP_403989.1 | 191 | 348976 | 349551 | |
| 201257 | hypothetical | YPO0342 | putative oxidoreductase Similar over whole length to Escherichia coli AegA protein expressed in E. coli under anaerobic conditions SW:AEGA_ECOLI (P37127) (659 aa) fasta scores: E(): 0, 56.6% id in 670 aa. The C-terminal portion of the product of this CDS is similar to many glutamate synthases e.g. Escherichia coli glutamate synthase [NADPH] small chain GltD SW:GLTD_ECOLI (P09832) (471 aa) fasta scores: E(): 0, 68.9% id in 470 aa | genbank | 16120677 | NP_403990.1 | 671 | 349971 | 351986 | |
| 201258 | hydN | hypothetical | YPO0343 | 4Fe-4S ferrodoxin Similar to Escherichia coli electron transport protein HydN SW:HYDN_ECOLI (P30132) (175 aa) fasta scores: E(): 0, 50.0% id in 176 aa | genbank | 16120678 | NP_403991.1 | 185 | 352009 | 352566 |
| 201259 | fdhF | hypothetical | YPO0344 | formate dehydrogenase H Similar to Escherichia coli formate dehydrogenase H, FdhF SW:FDHF_ECOLI (P07658) (715 aa) fasta scores: E(): 0, 63.4% id in 715 aa. Interestingly, unlike in E. coli and Salmonella, the Yersinia fdhF gene lacks the opal UGA selenocysteine codon. | genbank | 16120679 | NP_403992.1 | 715 | 352589 | 354736 |
| 201260 | dsbD | hypothetical | YPO0345 | thiol:disulfide interchange protein precursor two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bond | genbank | 16120680 | NP_403993.1 | 595 | 354798 | 356585 |
| 201261 | hypothetical | YPO0346 | putative cation tolerance protein Similar to Escherichia coli periplasmic divalent cation tolerance protein, CutA SW:CUTA_ECOLI (P36654) (112 aa) fasta scores: E(): 0, 73.2% id in 112 aa | genbank | 16120681 | NP_403994.1 | 119 | 356561 | 356920 | |
| 201262 | dcuA | hypothetical | YPO0347 | anaerobic C4-dicarboxylate transporter functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB | genbank | 16120682 | NP_403995.1 | 433 | 357105 | 358406 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201263 | aspA | hypothetical | YPO0348 | aspartate ammonia-lyase Similar to Escherichia coli aspartate ammonia-lyase AspA SW:ASPA_ECOLI (P04422) (478 aa) fasta scores: E(): 0, 89.3% id in 478 aa | genbank | 16120683 | NP_403996.1 | 478 | 358526 | 359962 |
| 201264 | hypothetical | YPO0349 | hypothetical protein Highly similar to Escherichia coli FxsA protein that suppresses F exclusion of bacteriophage T7 SW:FXSA_ECOLI (P37147) (158 aa) fasta scores: E(): 1.5e-29, 61.9% id in 176 aa | genbank | 16120684 | NP_403997.1 | 192 | 360410 | 360988 | |
| 201265 | groES | hypothetical | YPO0350 | co-chaperonin GroES 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; rel | genbank | 16120685 | NP_403998.1 | 97 | 361243 | 361536 |
| 201266 | groEL | hypothetical | YPO0351 | chaperonin GroEL 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are | genbank | 16120686 | NP_403999.1 | 548 | 361583 | 363229 |
| 201267 | hypothetical | YPO0352 | putative lipoprotein Similar to Escherichia coli hypothetical 13.1 kDa protein in mopA-efp intergenic region precursor YjeI SW:YJEI_ECOLI (P39278) (128 aa) fasta scores: E(): 1.6e-27, 61.9% id in 126 aa | genbank | 16120687 | NP_404000.1 | 128 | 363865 | 364251 | |
| 201268 | hypothetical | YPO0353 | hypothetical protein Similar to many proteins of undefined function e.g. Escherichia coli hypothetical protein YjeK SW:YJEK_ECOLI (P39280) (342 aa) fasta scores: E(): 0, 71.3% id in 341 aa. Also similar to several L-lysine 2,3-aminomutases e.g. from Clostridium subterminale KamA TR:Q9XBQ8 (EMBL:AF159146) (416 aa) fasta scores: E(): 0, 34.6% id in 324 aa | genbank | 16120688 | NP_404001.1 | 342 | 364536 | 365564 | |
| 201269 | efp | hypothetical | YPO0354 | elongation factor P Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA | genbank | 16120689 | NP_404002.1 | 188 | 365600 | 366166 |
| 201270 | sugE | hypothetical | YPO0355 | putative chaperone Similar to Citrobacter freundii SugE protein, a supressor of groEL SW:SUGE_CITFR (O69279) (105 aa) fasta scores: E(): 6e-27, 75.0% id in 104 aa and to Escherichia coli protein SugE SW:SUGE_ECOLI (P30743) (105 aa) fasta scores: E(): 4.7e-26, 76.0% id in 104 aa | genbank | 16120690 | NP_404003.1 | 104 | 366413 | 366727 |
| 201271 | tnp | hypothetical | YPO0356 | transposase for the IS1541 insertion element Similar to Salmonella typhimurium, and Salmonella typhi transposase for insertion sequence IS200 TnpA SW:T200_SALTY (Q57334) (152 aa) fasta scores: E(): 0, 94.1% id in 152 aa. Identical to the Yersinia pseudotuberculosis IS1541 element transposase Tnp TR:Q9X9F5 (EMBL:AJ238014) (152 aa) fasta scores: E(): 0, 100.0% id in 152 aa | genbank | 16120691 | NP_404004.1 | 152 | 366946 | 367404 |
| 201272 | frdD | hypothetical | YPO0357 | fumarate reductase subunit D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane | genbank | 16120692 | NP_404005.1 | 118 | 367602 | 367958 |
| 201273 | frdC | hypothetical | YPO0358 | fumarate reductase subunit C transmembrane anchor domain of the fumerate reductase which catalyzes the reduction of fumerate during anaerobic respiration | genbank | 16120693 | NP_404006.1 | 130 | 367975 | 368367 |
| 201274 | frdB | hypothetical | YPO0359 | succinate dehydrogenase Converts succinate to fumarate as part of the TCA cycle. It is the only membrane bound enzyme in the TCA cycle | genbank | 16120694 | NP_404007.1 | 244 | 368384 | 369118 |
| 201275 | frdA | hypothetical | YPO0360 | fumarate reductase Reduces fumarate to succinate in anaerobic bacterial respiration | genbank | 16120695 | NP_404008.1 | 607 | 369111 | 370934 |
| 201276 | hypothetical | YPO0361 | hypothetical protein Doubtful CDS with no significant database hits. Note the low G+C content (29%) | genbank | 16120696 | NP_404009.1 | 63 | 371041 | 371232 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201277 | hypothetical | YPO0362 | lysyl-tRNA synthetase lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA | genbank | 16120697 | NP_404010.1 | 325 | 371392 | 372369 | |
| 201278 | hypothetical | YPO0363 | putative membrane transport protein Similar to Escherichia coli potassium efflux system protein, KefA SW:KEFA_ECOLI (P77338) (1120 aa) fasta scores: E(): 0, 29.1% id in 1100 aa. Also similar to several proteins of undefined function e.g. Escherichia coli hypothetical 123.8 kDa protein in genX-psd intergenic region precursor YjeP SW:YJEP_ECOLI (P39285) (1107 aa) fasta scores: E(): 0, 68.1% id in 1105 aa | genbank | 16120698 | NP_404011.1 | 1119 | 372490 | 375849 | |
| 201279 | psd | hypothetical | YPO0364 | phosphatidylserine decarboxylase catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine | genbank | 16120699 | NP_404012.1 | 293 | 375873 | 376754 |
| 201280 | hypothetical | YPO0365 | ribosome-associated GTPase circularly permuted GTPase; has the pattern G4-G1-G3 as opposed to other GTPases; indispensable for growth in Escherichia coli and Bacillus subtilis; interacts strongly with 30S ribosome which stimulates GTPase activity | genbank | 16120700 | NP_404013.1 | 350 | 377079 | 378131 | |
| 201281 | orn | hypothetical | YPO0366 | oligoribonuclease 3' to 5' exoribonuclease specific for small oligoribonuclotides | genbank | 16120701 | NP_404014.1 | 181 | 378331 | 378876 |
| 201282 | hypothetical | YPO0367 | putative iron-sulfur cluster-binding protein Similar to several including: Vibrio cholerae iron-sulfur cluster-binding protein VC0342 TR:Q9KV16 (EMBL:AE004123) (369 aa) fasta scores: E(): 0, 58.7% id in 407 aa and Escherichia coli hypothetical protein YjeS or B4166 SW:YJES_ECOLI (P39288) (379 aa) fasta scores: E(): 0, 74.7% id in 411 aa | genbank | 16120702 | NP_404015.1 | 411 | 379821 | 381056 | |
| 201283 | hypothetical | YPO0368 | hypothetical protein Similar to many proteins of unknown function e.g. Escherichia coli hypothetical protein YjeF or B4167 SW:YJEF_ECOLI (P31806) (515 aa) fasta scores: E(): 0, 61.0% id in 502 aa | genbank | 16120703 | NP_404016.1 | 504 | 381055 | 382569 | |
| 201284 | hypothetical | YPO0369 | hypothetical protein Similar to several proteins of undefined function e.g. Escherichia coli hypothetical protein YjeE or B4168 SW:YJEE_ECOLI (P31805) (153 aa) fasta scores: E(): 3.5e-41, 73.026% id in 152 aa | genbank | 16120704 | NP_404017.1 | 156 | 382580 | 383050 | |
| 201285 | hypothetical | YPO0370 | putative N-acetylmuramoyl-L-alanine amidase-family protein Similar to Escherichia coli cell wall hydrolase: N-acetylmuramoyl-L-alanine amidase amiB precursor SW:AMIB_ECOLI (P26365) (445 aa) fasta scores: E(): 4e-86, 61.247% id in 449 aa. Also similar to Vibrio cholerae N-acetylmuramoyl-L-alanine amidase vc0344 TR:Q9KV14 (EMBL:AE004123) (581 aa) fasta scores: E(): 2.5e-41, 37.605% id in 593 aa. Note that like the Vibrio cholerae hit the Y. pestis predicted product also possesses an additional LysM domain which may be involved in peptidoglycan binding. | genbank | 16120705 | NP_404018.1 | 593 | 383190 | 384971 | |
| 201286 | mutL | hypothetical | YPO0371 | DNA mismatch repair protein This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself | genbank | 16120706 | NP_404019.1 | 635 | 384987 | 386894 |
| 201287 | miaA | hypothetical | YPO0372 | tRNA delta(2)-isopentenylpyrophosphate transferase Catalyzes the first step in the biosynthesis of 2-methylthio-N6-(delta(2)-isopentenyl) adenosine | genbank | 16120707 | NP_404020.1 | 313 | 386887 | 387828 |
| 201288 | ymr | hypothetical | YPO0373 | RNA-binding protein Hfq stimulates the elongation of poly(A) tails | genbank | 16120708 | NP_404021.1 | 101 | 387944 | 388249 |
| 201289 | hflX | hypothetical | YPO0374 | GTP-binding protein Similar to Escherichia coli GTP-binding protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein, HflX SW:HFLX_ECOLI (P25519) (426 aa) fasta scores: E(): 0, 84.7% id in 425 aa | genbank | 16120709 | NP_404022.1 | 428 | 388348 | 389634 |
| 201290 | hflK | hypothetical | YPO0375 | hypothetical protein Similar to Escherichia coli HflK protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein SW:HFLK_ECOLI (P25662) (419 aa) fasta scores: E(): 0, 80.5% id in 420 aa | genbank | 16120710 | NP_404023.1 | 419 | 389875 | 391134 |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201291 | hflC | hypothetical | YPO0376 | hypothetical protein Similar to Escherichia coli HflC protein which lies within the high frequency of lysogenization locus governing the stability of the lambda cII protein SW:HFLC_ECOLI (P25661) (334 aa) fasta scores: E(): 0, 81.7% id in 334 aa | genbank | 16120711 | NP_404024.1 | 334 | 391138 | 392142 |
| 201292 | hypothetical | YPO0377 | hypothetical protein Similar to several proteins of unknown function including: Escherichia coli hypothetical 7.2 kDa protein in hflC-purA intergenic region YjeT SW:YJET_ECOLI (P39289) (65 aa) fasta scores: E(): 3.7e-20, 81.538% id in 65 aa and Escherichia coli O157:H7 hypothetical 7.2 kDa protein ecs5152 TR:BAB38575 (EMBL:AP002568) (65 aa) fasta scores: E(): 3.7e-20, 81.538% id in 65 aa | genbank | 16120712 | NP_404025.1 | 66 | 392314 | 392514 | |
| 201293 | purA | hypothetical | YPO0378 | adenylosuccinate synthetase catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis | genbank | 16120713 | NP_404026.1 | 432 | 392614 | 393912 |
| 201294 | hypothetical | YPO0379 | hypothetical protein Similar to Escherichia coli and Shigella flexneri hypothetical protein YjeB SW:YJEB_ECOLI (P21498) (141 aa) fasta scores: E(): 0, 84.4% id in 141 aa, and to Vibrio parahaemolyticus hypothetical protein YjeB SW:YJEB_VIBPA (P40610) (141 aa) fasta scores: E(): 1.4e-31, 61.6% id in 138 aa | genbank | 16120714 | NP_404027.1 | 141 | 394281 | 394706 | |
| 201295 | rnr | hypothetical | YPO0380 | ribonuclease R Similar to Escherichia coli ribonuclease R Rnr SW:RNR_ECOLI (P21499) (813 aa) fasta scores: E(): 0, 77.936% id in 843 aa, and to Shigella flexneri ribonuclease R Rnr SW:RNR_SHIFL (P30851) (770 aa) fasta scores: E(): 0, 78.994% id in 795 aa | genbank | 16120715 | NP_404028.1 | 844 | 394947 | 397481 |
| 201296 | hypothetical | YPO0381 | putative methylase Similar to Escherichia coli hypothetical tRNA/rRNA methyltransferase YjfH SW:YJFH_ECOLI (P39290) (243 aa) fasta scores: E(): 0, 81.8% id in 242 aa, and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase HI0860 SW:YJFH_HAEIN (P44906) (246 aa) fasta scores: E(): 0, 70.4% id in 243 aa | genbank | 16120716 | NP_404029.1 | 246 | 397600 | 398340 | |
| 201297 | aidB | hypothetical | YPO0383 | putative acyl-CoA dehydrogenase Similar to Escherichia coli probable CoA dehydrogenase protein AidB SW:AIDB_ECOLI (P33224) (546 aa) fasta scores: E(): 0, 69.5% id in 541 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA3972 TR:AAG07359 (EMBL:AE004815) (549 aa) fasta scores: E(): 0, 44.8% id in 542 aa. Possible alternative translational start site | genbank | 16120717 | NP_404030.1 | 547 | 398748 | 400391 |
| 201298 | hypothetical | YPO0384 | putative lipoprotein Similar to Escherichia coli hypothetical lipoprotein YjfO SW:YJFO_ECOLI (P39297) (142 aa) fasta scores: E(): 1.8e-13, 43.5% id in 108 aa | genbank | 16120718 | NP_404031.1 | 103 | 400463 | 400774 | |
| 201299 | hypothetical | YPO0385 | transposase/IS protein Similar to Escherichia coli insertion sequence IS21 putative ATP-binding protein, IstB SW:ISTB_ECOLI (P15026) (265 aa) fasta scores: E(): 0, 47.4% id in 249 aa. Also almost identical to Yersinia pestis and Escherichia coli putative IS100 transposase ypmt1.57c TR:Q9R3L5 (EMBL:AL117211) (260 aa) fasta scores: E(): 0, 99.6% id in 260 aa. | genbank | 16120719 | NP_404032.1 | 260 | 401114 | 401896 | |
| 201300 | hypothetical | YPO0386 | transposase for insertion sequence IS100 Similar to Escherichia coli transposase for insertion sequence element IS21 IstA SW:ISTA_ECOLI (P15025) (390 aa) fasta scores: E(): 3e-27, 33.1% id in 329 aa. Identical to the previously sequenced Yersinia pestis, Yersinia pseudotuberculosis, and Escherichia coli pesticin plasmid insertion sequence transposase Y1055 TR:P74993 (EMBL:U59875) (340 aa) fasta scores: E(): 0, 100.0% id in 340 aa | genbank | 16120720 | NP_404033.1 | 340 | 401893 | 402915 | |
| 201301 | hypothetical | YPO0387 | hypothetical protein C-terminal region is similar to the C-terminus of Escherichia coli 5-methylcytosine-specific restriction enzyme B McrB SW:MCRB_ECOLI (P15005) (459 aa) fasta scores: E(): 9.5e-12, 36.0% id in 211 aa. Internal region of the CDS is similar to the C-terminus of Deinococcus radiodurans McrB-related protein DRB0143 TR:Q9RZI5 (EMBL:AE001826) (969 aa) fasta scores: E(): 6.4e-30, 35.5% id in 498 aa. Possible gene remnant | genbank | 16120721 | NP_404034.1 | 687 | 403049 | 405112 | |
| 201302 | hypothetical | YPO0388 | hypothetical protein Similar to Deinococcus radiodurans hypothetical protein DRB0144 TR:Q9RZI4 (EMBL:AE001826) (442 aa) fasta scores: E(): 7.1e-30, 30.4% id in 395 aa, and to Campylobacter jejuni hypothetical protein CJ0140 TR:Q9PIY7 (EMBL:AL139074) (443 aa) fasta scores: E(): 2.9e-21, 28.8% id in 382 aa | genbank | 16120722 | NP_404035.1 | 438 | 405109 | 406425 | |
| 201303 | hypothetical | YPO0389 | hypothetical protein Doubtful CDS. No significant database hits | genbank | 16120723 | NP_404036.1 | 76 | 406492 | 406722 | |
| 201304 | hypothetical | YPO0390 | hypothetical protein No significant database hits to the full length CDS. Similar to an internal region of Rhizobium sp insertion element ISR1 hypothetical protein A SW:YIA_RHISP (P17986) (278 aa) fasta scores: E(): 0.033, 37.2% id in 86 aa | genbank | 16120724 | NP_404037.1 | 155 | 406969 | 407436 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201305 | hypothetical | YPO0391 | modification methylase Similar to Micrococcus varians modification methylase MvaI SW:MTMV_MICVA (P14244) (454 aa) fasta scores: E(): 0, 29.6% id in 456 aa, and to Pyrococcus sp GI-H PspGI restriction-modification system methylase TR:O93645 (EMBL:AF067805) (433 aa) fasta scores: E(): 1.6e-21, 30.3% id in 458 aa | genbank | 16120725 | NP_404038.1 | 441 | 407449 | 408774 | |
| 201306 | hypothetical | YPO0392 | hypothetical protein Similar to N-terminal regions of Neisseria meningitidis hypothetical protein NMA0428 TR:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 6.4e-07, 27.7% id in 260 aa, and to Campylobacter jejuni Hsp90 family heat shock protein HtpG TR:Q9PHZ3 (EMBL:AL139075) (608 aa) fasta scores: E(): 0.23, 25.1% id in 251 aa | genbank | 16120726 | NP_404039.1 | 240 | 408824 | 409546 | |
| 201307 | hypothetical | YPO0393 | hypothetical protein Poor database hits, similar to internal regions of Caenorhabditis elegans hypothetical protein ZC53.4 TR:Q23371 (EMBL:U47144) (1410 aa) fasta scores: E(): 1.3, 21.6% id in 375 aa, and Ureaplasma parvum hypothetical protein UU293 TR:Q9PQJ8 (EMBL:AE002126) (1447 aa) fasta scores: E(): 4.8, 21.4% id in 415 aa | genbank | 16120727 | NP_404040.1 | 411 | 409656 | 410891 | |
| 201308 | hypothetical | YPO0394 | hypothetical protein No significant database hits | genbank | 16120728 | NP_404041.1 | 95 | 411235 | 411522 | |
| 201309 | hypothetical | YPO0395 | transposase (partial) Probable gene remnant. Similar to N-terminal region of Yersinia pestis probable transposase remnant protein YPCD1.03C TR:Q9RI27 (EMBL:AL117189) (83 aa) fasta scores: E(): 2.5e-09, 96.0% id in 25 aa, and to Escherichia coli transposase IS21 TR:O82915 (EMBL:AB011549) (136 aa) fasta scores: E(): 4.9e-09, 92.0% id in 25 aa | genbank | 16120729 | NP_404042.1 | 31 | 411962 | 412054 | |
| 201310 | hypothetical | YPO0396 | hypothetical protein Similar to C-terminal regions of Xylella fastidiosa hypothetical protein XF2734 TR:Q9P9Y6 (EMBL:AE004080) (1144 aa) fasta scores: E(): 0.00014, 24.4% id in 468 aa, and Aeropyrum pernix hypothetical protein APE0110 TR:Q9YFZ1 (EMBL:AP000058) (919 aa) fasta scores: E(): 0.048, 23.2% id in 452 aa. Contains coil-coiled domain at approx. residues 68 to 97 | genbank | 16120730 | NP_404043.1 | 470 | 412139 | 413551 | |
| 201311 | hypothetical | YPO0397 | hypothetical protein Weak database hits to the full length CDS. Similar to Xylella fastidiosa hypothetical protein XF2735 TR:Q9P9Y5 (EMBL:AE004080) (401 aa) fasta scores: E(): 8.3e-09, 27.8% id in 389 aa | genbank | 16120731 | NP_404044.1 | 384 | 413548 | 414702 | |
| 201312 | hypothetical | YPO0398 | M48 peptidase family protein Similar to Deinococcus radiodurans conserved hypothetical protein DR0190 TR:Q9RXW5 (EMBL:AE001881) (402 aa) fasta scores: E(): 1.2e-07, 26.6% id in 379 aa. C-terminal region is similar to the N-terminus of Myxococcus xanthus hypothetical protein TR:O30615 (EMBL:AF013216) (478 aa) fasta scores: E(): 4.6e-07, 23.7% id in 253 aa | genbank | 16120732 | NP_404045.1 | 348 | 414848 | 415894 | |
| 201313 | hypothetical | YPO0399 | hypothetical protein Similar to Escherichia coli hypothetical protein YjgN SW:YJGN_ECOLI (P39338) (393 aa) fasta scores: E(): 2.5e-30, 30.9% id in 379 aa, and to Salmonella typhimurium hypothetical protein YjgN SW:YJGN_SALTY (Q08022) (314 aa) fasta scores: E(): 1.8e-26, 30.7% id in 316 aa. S. typhimurium protein appears to be truncated at the C-terminus in comparison to E. coli and Y. pestis proteins | genbank | 16120733 | NP_404046.1 | 398 | 415905 | 417101 | |
| 201314 | hypothetical | YPO0400 | hypothetical protein No significant database hits | genbank | 16120734 | NP_404047.1 | 178 | 417807 | 418343 | |
| 201315 | hypothetical | YPO0401 | putative transcriptional regulator Similar to Salmonella typhimurium regulatory protein PocR SW:POCR_SALTY (Q05587) (303 aa) fasta scores: E(): 2.8e-09, 38.4% id in 112 aa and to Escherichia coli hypothetical transcriptional regulator YioO SW:YIJO_ECOLI (P32677) (283 aa) fasta scores: E(): 0, 53.9% id in 280 aa | genbank | 16120735 | NP_404048.1 | 291 | 418345 | 419220 | |
| 201316 | hypothetical | YPO0402 | PTS system, IIB component Similar to many carbohydrate phosphotransferase system IIB components e.g. Escherichia coli PTS system, fructose-like-2 IIB component 2 FrwD SW:PTWX_ECOLI (P32676) (113 aa) fasta scores: E(): 3.2e-23, 52.7% id in 110 aa | genbank | 16120736 | NP_404049.1 | 114 | 419213 | 419557 | |
| 201317 | hypothetical | YPO0403 | PTS system, IIB component Similar to many carbohydrate phosphotransferase IIB components e.g. Escherichia coli PTS system, fructose-like-2 IIB component 1 FrwB, SW:PTWB_ECOLI (P32673) (106 aa) fasta scores: E(): 0, 82.7% id in 104 aa. Similar to part of Rhodobacter capsulatus PTS system, fructose-specific IIBC component FruA SW:PTFB_RHOCA (P23387) (578 aa) fasta scores: E(): 6.3e-16, 47.4% id in 97 aa and to Escherichia coli PTS system, fructose-specific IIBC component FruA, PtsF, SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 1e-15, 49.5% id in 97 aa | genbank | 16120737 | NP_404050.1 | 106 | 419650 | 419970 | |
| 201318 | hypothetical | YPO0404 | PTS system, IIC component Similar to many carbohydrate phosphotransferase IIC components e.g. part of Escherichia coli PTS system, fructose-specific IIBC component FruA SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 0, 40.7% id in 329 aa and to Escherichia coli PTS system, fructose-like-2 IIC component FrwC SW:PTWC_ECOLI (P32672) (359 aa) fasta scores: E(): 0, 76.5% id in 358 aa | genbank | 16120738 | NP_404051.1 | 361 | 420311 | 421396 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201319 | hypothetical | YPO0405 | putative phosphoenolpyruvate-protein phosphotransferase Similar to e.g. Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsI, SW:PT1_ECOLI (P08839) (575 aa) fasta scores: E(): 0, 36.0% id in 583 aa, but has both N- and C-terminal extensions. Also similar to Escherichia coli phosphoenolpyruvate-protein phosphotransferase PtsA, SW:PT1A_ECOLI (P32670) (711 aa) fasta scores: E(): 0, 64.5% id in 726 aa and to Escherichia coli putative phosphoenolpyruvate-protein phosphotransferase YpdD, SW:YPDD_ECOLI (P77439) (831 aa) fasta scores: E(): 0, 41.5% id in 853 aa | genbank | 16120739 | NP_404052.1 | 852 | 421758 | 424316 | |
| 201320 | hypothetical | YPO0406 | hypothetical protein Similar to Escherichia coli hypothetical protein YjjA SW:YJJA_ECOLI (P18390) (165 aa) fasta scores: E(): 4.3e-21, 45.6% id in 158 aa | genbank | 16120740 | NP_404053.1 | 163 | 424378 | 424869 | |
| 201321 | hypothetical | YPO0407 | hypothetical protein Similar to e.g. Escherichia coli hypothetical protein YneC SW:YNEC_ECOLI (P76144) (96 aa) fasta scores: E(): 2.6e-30, 75.0% id in 96 aa and to Pseudomonas aeruginosa hypothetical protein PA0709 TR:AAG04098 (EMBL:AE004506) (98 aa) fasta scores: E(): 1.5e-05, 40.2% id in 87 aa | genbank | 16120741 | NP_404054.1 | 96 | 425170 | 425460 | |
| 201322 | hypothetical | YPO0408 | hypothetical protein Similar to many putative aldolases e.g. Escherichia coli putative aldolase YneB, SW:YNEB_ECOLI (P76143) (291 aa) fasta scores: E(): 0, 83.8% id in 290 aa | genbank | 16120742 | NP_404055.1 | 291 | 425524 | 426399 | |
| 201323 | hypothetical | YPO0409 | putative periplasmic solute-binding protein Similar to many ABC transport binding proteins e.g. Escherichia coli D-allose-binding periplasmic protein precursor AlsB SW:ALSB_ECOLI (P39265) (311 aa) fasta scores: E(): 3.4e-06, 24.4% id in 299 aa and to Escherichia coli hypothetical protein TR:P76142 (EMBL:AE000249) (340 aa) fasta scores: E(): 0, 84.4% id in 340 aa | genbank | 16120743 | NP_404056.1 | 339 | 426455 | 427474 | |
| 201324 | hypothetical | YPO0410 | putative ABC transporter permease protein Similar to many ABC transporter permeases e.g. Bacillus subtilis ribose transport system permease protein RbsC SW:RBSC_BACSU (P36948) (323 aa) fasta scores: E(): 7.1e-26, 32.7% id in 300 aa and to Escherichia coli hypothetical ABC transporter permease protein YdeZ SW:YDEZ_ECOLI (P77651) (330 aa) fasta scores: E(): 0, 81.3% id in 321 aa | genbank | 16120744 | NP_404057.1 | 333 | 427540 | 428541 | |
| 201325 | hypothetical | YPO0411 | putative ABC transporter permease protein Similar to many ABC transporter permeases e.g. Escherichia coli ribose transport system permease protein RbsC SW:RBSC_ECOLI (P04984) (321 aa) fasta scores: E(): 2.3e-25, 33.2% id in 307 aa and to Escherichia coli hypothetical ABC transporter permease protein YdeY SW:YDEY_ECOLI (P77672) (342 aa) fasta scores: E(): 0, 75.7% id in 350 aa | genbank | 16120745 | NP_404058.1 | 351 | 428538 | 429593 | |
| 201326 | hypothetical | YPO0412 | putative ABC transporter ATP-binding protein Similar to many ABC transporter ATP-binding proteins e.g. Escherichia coli putative ABC transporter ATP-binding protein Ego SW:EGO_ECOLI (P77257) (511 aa) fasta scores: E(): 0, 66.0% id in 497 aa and to Bacillus stearothermophilus L-arabinose transport, ATP binding protein AraG TR:Q9S472 (EMBL:AF160811) (513 aa) fasta scores: E(): 0, 35.7% id in 507 aa | genbank | 16120746 | NP_404059.1 | 527 | 429587 | 431170 | |
| 201327 | hypothetical | YPO0413 | hypothetical protein Doubtfull CDS. No significant database matches | genbank | 16120747 | NP_404060.1 | 103 | 431280 | 431591 | |
| 201328 | hypothetical | YPO0415 | putative carbohydrate kinase Similar to carbohydrate kinases e.g. Bacillus subtilis gluconokinase GntK, SW:GNTK_BACSU (P12011) (513 aa) fasta scores: E(): 1.2e-26, 26.250% id in 480 aa and Escherichia coli hypothetical sugar kinase YdeV, SW:YDEV_ECOLI (P77432) (530 aa) fasta scores: E(): 2.7e-181, 78.302% id in 530 aa | genbank | 16120748 | NP_404061.1 | 530 | 432673 | 434265 | |
| 201329 | hypothetical | YPO0416 | putative lipopolysaccharide core biosynthesis protein Similar to Escherichia coli lipopolysaccharide core biosynthesis protein RfaQ or WaaQ SW:RFAQ_ECOLI (P25742) (344 aa) fasta scores: E(): 2.3e-45, 40.356% id in 337 aa and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein RfaQ or WaaQ TR:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 3.8e-46, 41.246% id in 337 aa | genbank | 16120749 | NP_404062.1 | 346 | 434734 | 435774 | |
| 201330 | hypothetical | YPO0417 | putative O-antigen biosynthesis protein Shows weak similarity to Salmonella typhimurium O-antigen ligase RfaL SW:RFAL_SALTY (P26471) (404 aa) fasta scores: E(): 0.0056, 24.796% id in 367 aa. Similar to other putative O-antigen biosynthesis genes e.g. Haemophilus influenzae hypothetical protein HI0874 SW:Y874_HAEIN (P44067) (399 aa) fasta scores: E(): 7.4e-06, 25.369% id in 406 aa | genbank | 16120750 | NP_404063.1 | 410 | 435822 | 437054 | |
| 201331 | hypothetical | YPO0418 | hypothetical protein Similar to the N-terminal region of Arabidopsis thaliana putative ring zinc finger protein At2g42350 TR:Q9SLC4 (EMBL:AC005956) (217 aa) fasta scores: E(): 5.9, 28.814% id in 59 aa | genbank | 16120751 | NP_404064.1 | 65 | 437640 | 437837 | |
| 201332 | hypothetical | YPO0419 | hypothetical protein Similar to the C-terminal regions of Malawimonas jakobiformis ABC transporter channel subunit YejV TR:Q9G873 (EMBL:AF295546) (218 aa) fasta scores: E(): 3, 32.857% id in 70 aa, and to Albinaria coerulea NADH-ubiquinone oxidoreductase chain 6 Nd6 SW:NU6M_ALBCO (P48922) (155 aa) fasta scores: E(): 3.3, 27.397% id in 73 aa | genbank | 16120752 | NP_404065.1 | 77 | 437864 | 438097 | |
| Single chain protein id | Protein name | Protein type | Locus tag | Description / User comment | Database name | Database id | Genbank accession | Length | Start on contig / cds translation | End on contig / cds translation |
| 201333 | hypothetical | YPO0420 | putative lipoprotein Similar to Vibrio cholerae putative multidrug resistance protein Vc1675 TR:Q9KRG7 (EMBL:AE004245) (343 aa) fasta scores: E(): 1.2e-22, 30.919% id in 359 aa, and to Pseudomonas aeruginosa probable Rnd efflux membrane fusion protein precursor Pa4374 TR:Q9HW28 (EMBL:AE004853) (376 aa) fasta scores: E(): 2.1e-13, 28.086% id in 324 aa | genbank | 16120753 | NP_404066.1 | 360 | 438149 | 439231 |