Reference SNP(refSNP) Cluster Report: rs2945496

Reference SNP(refSNP) Cluster Report: rs2945496

refSNP ID: rs2945496
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	101/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss4152260 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2945496 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss4152260	SC_JCM\|AC068152.3_48085		fwd/T	A/G	tctggttccataaccagaaattgctacctg	ctcttctaatagaatggagggcttttccat	10/15/01	10/10/03	101	Genomic			unknown
ss75322060	ILLUMINA\|ILMN_Human_1M_rs2945496		fwd/T	A/G	tctggttccataaccagaaattgctacctg	ctcttctaatagaatggagggcttttccat	08/28/07	08/29/07	129	Genomic			unknown

Fasta sequence (Legend)

 AGTGATAATT TCTTCATATA GTGCAAAGTA GTTTGTAAGG TGGTTTTAAA TTCATGAGGT
 CTCAAGTACT CTCTGCCTTA TAGGACAGAT GTAGATACGG TTTCGGTTTT TCTGTTTTTA
 CAGTTTTATA AGAGTACAAG TGATGCTGTT TTATTTGAAG CCTGAGAGCT TCTGGTTCCA
 TAACCAGAAA TTGCTACCTG
 R
 CTCTTCTAAT AGAATGGAGG GCTTTTCCAT TCTTAGACCA TCCAACTCTG AACTTGCTCT
 GAATCTCAAA CCTTTCTGTT CACAGAACAA ATGCTCAAGG GCTTTCAAGA GTGTTTCTGT
 AGATTAGGTT TATTAGCATC AACTTCATGA CTTCTAAAAT GTGACTACTT TCATGTCCAG
 ATAGCTTGAA TACAGGTATC

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs2945496 maps exactly once on NCBI human chromosome 17

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
17	NW_001838448.1	371392	40503412	plus	G	alt_assembly_8	HuRef	HuRef	view	200
17	NW_926883.1	348314	41575155	plus	G	alt_assembly_1	Celera	Celera	view	200
17	NT_010783.14	3778420	42480141	plus	G	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
AC068152 AC069007 AC091132

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .