NCBI

Alignment last updated: 11/11/2008 11:57:53

Join Evaluation Legend

Alignments for AC017020.4 and AC011749.2

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AC017020.4 Homo sapiens BAC clone RP11-185K15 from Y, complete sequence [htgs_phase3]

Length: 166,403 bp

AC011749.2 Homo sapiens BAC clone RP11-455E3 from Y, complete sequence [htgs_phase3]

Length: 205,053 bp

Alignment Summary

Join evaluation: green

Alignment count: 2

Go to Endhit Table

  • Alignment 1
  • Align ID: 35488
  • Total Length: 200
  • Aligned Length: 200
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (L)
  • Valid Switchpoint: true (A)
Overlap Image
  • Alignment 2
  • Align ID: 35489
  • Total Length: 200
  • Aligned Length: 200
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (L)
  • Valid Switchpoint: true (A)
Overlap Image
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Alignment 1 of 2

 Mismatches = 0, Gaps = 0, Length = 200
 Percent identity = 100%
 Score = 397 bits (200), Expect = 1.084e-109
  5 BAC and 5 Fosmid bridging clones.
  5 BAC and 5 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC017020.4 >166204  gaattccctaccagtcagcaagccatccccagtatgaatccccacagagaccttgactta 166263 
AC011749.2 >1       ............................................................ 60     

AC017020.4 >166264  gatcatggggactggagtcacaaacatctgttgacctgtgttctaggaggactaaggagt 166323 
AC011749.2 >61      ............................................................ 120    

AC017020.4 >166324  attaggaaatagcccatgaattaatcaatgatgttcaccataactcagggaaaggaagaa 166383 
AC011749.2 >121     ............................................................ 180    

AC017020.4 >166384  aatccttctgccttccatga 166403 
AC011749.2 >181     .................... 200

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Alignment 2 of 2

 Mismatches = 0, Gaps = 0, Length = 200
 Percent identity = 100%
 Score = 397 bits (200), Expect = 1.084e-109
  5 BAC and 5 Fosmid bridging clones.
  5 BAC and 5 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC017020.4 >166204  gaattccctaccagtcagcaagccatccccagtatgaatccccacagagaccttgactta 166263 
AC011749.2 >1       ............................................................ 60     

AC017020.4 >166264  gatcatggggactggagtcacaaacatctgttgacctgtgttctaggaggactaaggagt 166323 
AC011749.2 >61      ............................................................ 120    

AC017020.4 >166324  attaggaaatagcccatgaattaatcaatgatgttcaccataactcagggaaaggaagaa 166383 
AC011749.2 >121     ............................................................ 180    

AC017020.4 >166384  aatccttctgccttccatga 166403 
AC011749.2 >181     .................... 200


Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTime
L1662031++chenhcTaxid 9606 chrom Y Reference assembly2008-08-08 12:39:34.216
A166403201++chenhcTaxid 9606 chrom Y Reference assembly2008-11-11 11:57:53.866

Events
IdTypeDateWhodidComment
53692InitHasAlign08/30/2006 12:54:57jcherry
find_overlaps run without blast filtering (-F F)
53693ReRunFndOvlp10/02/2006 02:07:22jcherry
blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F F
bandwidths: 501 701 1001 5001
Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730

Running blast for AC011749.2 and AC017020.4
Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F F
137305CreateSwitchPt08/08/2008 12:39:34chenhc
From Hs build 36.1 agp files
53694ReSetShortOvlp09/04/2008 10:31:48dbo


162472CreateSwitchPt11/11/2008 11:57:53chenhc
contig_builder 1.3  Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib




   

   

		
		

down arrow  BAC Ends



CloneRF


Accession%idPosition (strand) Accession%idPosition (strand)


CTC-388N1AC011749.299.72%pos 100826 (R+) AC011749.299.55%pos 169818 (F-) 
CTC-497K15AC017020.4100%pos 110830 (R-)  
CTD-2024M12 AC011749.299.54%pos 67164 (F+) 
CTD-2024N11AC011749.298.72%pos 154532 (R-) AC011749.299.36%pos 67164 (F+) 
AC011749.299%pos 154538 (R-)  
CTD-2270N15AC011749.299.46%pos 97671 (R-)  
CTD-2326E16 AC011749.299.77%pos 144055 (F-) 
CTD-3083N19AC011749.2100%pos 17707 (R+) AC011749.2100%pos 72724 (F-) 
CTD-3120K13AC017020.498.08%pos 11926 (R+) AC017020.497.22%pos 166174 (F-) 
CTD-3180L11 AC011749.298.33%pos 111194 (F+) 
CTD-3201F24 AC011749.298.76%pos 55657 (F-) 
RP11-1080G21AC011749.298.01%pos 127291 (R+)  
RP11-1133F13AC017020.498.28%pos 102293 (R+) AC011749.299.8%pos 78907 (F-) 
RP11-1143A24AC011749.299.52%pos 103462 (R+) AC011749.297.66%pos 188855 (F+) 
RP11-161H10 AC011749.299.82%pos 121062 (F-) 
RP11-168P23 AC017020.499.87%pos 48639 (F-) 
RP11-185K15AC017020.498.86%pos 1 (R+) AC011749.2100%pos 13624 (F-) 
RP11-22E3AC011749.299.18%pos 138770 (R+) AC011749.298.91%pos 138803 (F+) 
AC011749.299.23%pos 138786 (R+)  
RP11-360J4 AC011749.299.58%pos 127282 (F-) 
RP11-455E3 AC011749.2100%pos 23 (F+) 
RP11-65M14AC017020.4100%pos 49073 (R-)  
RP11-80C13AC017020.499.82%pos 41781 (R+) AC011749.298.82%pos 31397 (F-) 
 AC011749.299.81%pos 31400 (F-) 
RP11-97B6AC011749.2100%pos 111146 (R+) AC011749.299.86%pos 173358 (F+) 
RP11-97I18AC017020.499.64%pos 143649 (R+) AC011749.298.81%pos 136747 (F-) 
RP11-99D9AC017020.4100%pos 87651 (R+) AC011749.299.1%pos 78817 (F-) 



down arrow  Fosmid Ends



CloneRF


Accession%idPosition (strand) Accession%idPosition (strand)


ABC8-2112540A20AC011749.299.86%pos 136036 (R+) AC011749.2100%pos 169904 (F-) 
ABC8-2113540M17AC011749.299.7%pos 139040 (R+) AC011749.2100%pos 177351 (F-) 
ABC8-2115040E21AC011749.299.66%pos 188130 (R+)  
ABC8-2116640B10 AC011749.2100%pos 154005 (F+) 
ABC8-2139040E9AC017020.499.75%pos 14176 (R-)  
ABC8-2142640H23AC011749.2100%pos 175154 (R+)  
ABC8-2606640L6AC017020.4100%pos 140230 (R+) AC011749.299.73%pos 9047 (F-) 
ABC8-2606740A20AC011749.299.72%pos 79682 (R+) AC011749.2100%pos 116474 (F-) 
ABC8-2621340O23 AC011749.2100%pos 165093 (F+) 
ABC8-2622540K13 AC011749.2100%pos 190405 (F+) 
ABC8-2623940J10AC017020.499.86%pos 143867 (R-) AC017020.4100%pos 109223 (F+) 
ABC8-40290900M24 AC017020.498.87%pos 8113 (F-) 
ABC8-40299100G4AC017020.499.47%pos 137507 (R+) AC011749.299.83%pos 11452 (F-) 
ABC8-40856000D16AC011749.299.74%pos 89810 (R+) AC011749.2100%pos 123444 (F-) 
ABC8-40856800P4AC011749.299.86%pos 73157 (R-)  
ABC8-40857800A3AC011749.299.71%pos 194751 (R+) AC011749.298.98%pos 202082 (F+) 
ABC8-40869400H19AC011749.299.57%pos 194767 (R+) AC011749.2100%pos 202088 (F+) 
ABC8-40871200M14AC011749.299.86%pos 119147 (R+) AC011749.299.85%pos 152696 (F-) 
ABC8-40871900K8AC011749.2100%pos 167723 (R-) AC011749.2100%pos 123792 (F+) 
ABC8-40885400E24AC011749.299.59%pos 108416 (R+) AC011749.299.54%pos 152548 (F-) 
ABC8-40893200H5AC011749.299.75%pos 135507 (R-) AC011749.299.73%pos 100673 (F+) 
ABC8-40895900P12AC017020.499.83%pos 99515 (R-) AC017020.499.84%pos 66190 (F+) 
ABC8-40899600M21AC011749.298.97%pos 170332 (R+)  
ABC8-40902700J18AC011749.299.59%pos 73147 (R-) AC011749.299.86%pos 35491 (F+) 
ABC8-40908400D10AC011749.298.87%pos 156038 (R-) AC011749.2100%pos 114619 (F+) 
ABC8-40910800F2AC017020.499.87%pos 5551 (R+) AC017020.4100%pos 48777 (F-) 
ABC8-40958600F21 AC011749.2100%pos 94325 (F-) 
ABC8-40959600I18AC011749.299.87%pos 135526 (R-) AC011749.2100%pos 100666 (F+) 
ABC8-40963800A12 AC011749.299.36%pos 110325 (F-) 
ABC8-40971300C8 AC011749.297.42%pos 84991 (F+) 
ABC8-40973800I15AC011749.299.18%pos 102151 (R+) AC011749.298.75%pos 127955 (F-) 
ABC8-40981600D20AC011749.299.21%pos 136170 (R-) AC011749.299.29%pos 93915 (F+) 
ABC8-40989600H23AC011749.299.73%pos 55320 (R+) AC011749.2100%pos 88851 (F-) 
ABC8-41019300O17AC011749.2100%pos 136174 (R-) AC011749.299.44%pos 93873 (F+) 
ABC8-41038900E9AC011749.299.59%pos 194449 (R+)  
ABC8-41045100N19AC011749.2100%pos 122536 (R-)  
ABC8-41047800P16AC011749.298.95%pos 113892 (R-)  
ABC8-41051000C23AC017020.499.72%pos 34296 (R+) AC017020.499.86%pos 66874 (F-) 
ABC8-41055700F13AC011749.299.59%pos 14121 (R+) AC011749.299.02%pos 52778 (F-) 
ABC8-41062500K2AC011749.2100%pos 26316 (R+) AC011749.299.86%pos 64602 (F-) 
ABC8-41063500F22AC011749.299.54%pos 29641 (R+) AC011749.2100%pos 68449 (F-) 
ABC8-41064100E8AC017020.499.46%pos 164987 (R-) AC017020.499.69%pos 125015 (F+) 
ABC8-41064800K1AC011749.2100%pos 80349 (R+)  
ABC8-41069100L3AC017020.4100%pos 71343 (R-) AC017020.4100%pos 41934 (F+) 
ABC8-41078500A13AC011749.299.85%pos 76338 (R+) AC011749.299.83%pos 117475 (F-) 
ABC8-41079200E19 AC017020.499.58%pos 83136 (F+) 
ABC8-41079700B13AC011749.2100%pos 27829 (R+) AC011749.299.74%pos 63390 (F-) 
ABC8-41081000J19AC011749.299.87%pos 80344 (R+) AC011749.298.95%pos 119633 (F-) 
ABC8-41088200C10 AC011749.299.59%pos 183636 (F+) 
ABC8-41088900I7AC017020.499.5%pos 98280 (R+) AC017020.499.72%pos 131261 (F-) 
ABC8-41089500G10AC011749.299.75%pos 85408 (R+) AC011749.299.86%pos 123161 (F-) 
ABC8-41092700K23AC011749.2100%pos 85143 (R-) AC011749.299.83%pos 49522 (F+) 
ABC8-41094600D22AC011749.299.69%pos 174220 (R-) AC011749.299.71%pos 139634 (F+) 
ABC8-41095900C1AC017020.499.75%pos 151023 (R-) AC017020.499.72%pos 115788 (F+) 
ABC8-41101800P3 AC011749.299.26%pos 142761 (F+) 
ABC8-41107400B17 AC011749.299.44%pos 97975 (F-) 
ABC8-41114200J5AC017020.498.33%pos 58732 (R+) AC017020.499.84%pos 94331 (F-) 
ABC8-41114600L5AC011749.2100%pos 17141 (R+) AC011749.2100%pos 52921 (F-) 
ABC8-41118500C13AC011749.298.36%pos 175143 (R+)  
ABC8-41135300O6AC017020.499.57%pos 146957 (R+) AC011749.299.87%pos 17553 (F-) 
ABC8-41151400C2 AC011749.299.58%pos 189710 (F+) 
ABC8-41165400P11AC017020.499.78%pos 30205 (R+) AC017020.498.97%pos 64317 (F-) 
ABC8-41167500B7AC017020.499.88%pos 44463 (R+) AC017020.499.4%pos 81309 (F-) 
ABC8-41182200E5AC011749.299.85%pos 58357 (R-) AC011749.299.84%pos 23428 (F+) 
ABC8-41182300P23AC011749.299.44%pos 171103 (R+)  
ABC8-41188800C23AC011749.299.83%pos 87304 (R-) AC011749.299.85%pos 50374 (F+) 
ABC8-41189900C21AC011749.299.86%pos 201438 (R+)  
ABC8-41191000C21AC017020.499.85%pos 54858 (R+) AC017020.4100%pos 89394 (F-) 
ABC8-41198000F23AC011749.2100%pos 109013 (R+) AC011749.2100%pos 143742 (F-) 
ABC8-41198000I23AC011749.299.86%pos 132866 (R-) AC011749.299.72%pos 98301 (F+) 
ABC8-41203100B18AC011749.299.84%pos 25138 (R-) AC017020.499.87%pos 154258 (F+) 
ABC8-41213800C20AC011749.299.46%pos 33943 (R-) AC017020.4100%pos 163098 (F+) 
ABC8-41226700D15AC011749.299.86%pos 163817 (R+)  
ABC8-41229800G20 AC011749.299.46%pos 125858 (F-) 
ABC8-41796900L16AC011749.299.75%pos 21723 (R+) AC011749.299.28%pos 54608 (F-) 
ABC8-42027000B17AC011749.299.85%pos 190408 (R+)  
ABC8-42091200G19AC011749.2100%pos 98985 (R+) AC011749.2100%pos 138889 (F-) 
ABC8-42092000L15AC017020.4100%pos 42697 (R+) AC017020.499.59%pos 79514 (F-) 
ABC8-42094100F24AC017020.499.86%pos 143046 (R-) AC017020.4100%pos 107105 (F+) 
ABC8-42117200L8AC011749.2100%pos 35586 (R+) AC011749.2100%pos 72672 (F-) 
ABC8-42165200L24AC011749.297.19%pos 51115 (R+) AC011749.299.6%pos 90999 (F-) 
ABC8-42229600F14AC017020.499.7%pos 144021 (R-) AC017020.499.73%pos 108518 (F+) 
ABC8-42531700N12 AC017020.499.23%pos 21054 (F-) 
ABC8-42534300N10AC011749.2100%pos 116656 (R+) AC011749.297.26%pos 133719 (F-) 
ABC8-42557700M10 AC011749.299.46%pos 152477 (F+) 
ABC8-42559100H22AC017020.4100%pos 67385 (R-)  
ABC8-42559600I9AC017020.4100%pos 56459 (R-) AC017020.4100%pos 16675 (F+) 
ABC8-42975900E13AC011749.299.67%pos 27196 (R+) AC011749.299.86%pos 62654 (F-) 
ABC8-42993100O16 AC011749.299.46%pos 193434 (F+) 
ABC8-42998400B16 AC011749.2100%pos 106622 (F-) 
ABC8-43001900P22 AC011749.298.99%pos 125340 (F+) 
ABC8-43003800C4AC017020.499.83%pos 4038 (R-)  
ABC8-43005000D23AC011749.299.46%pos 173597 (R+)  
ABC8-43008900B10 AC011749.2100%pos 200192 (F-) 
ABC8-43012100J10AC011749.298.57%pos 108942 (R+)  
ABC8-43017400H10 AC011749.299.34%pos 99807 (F-) 
ABC8-43021800L24AC011749.299.45%pos 71718 (R-)  
ABC8-43023800J21AC011749.299.7%pos 114880 (R+) AC011749.2100%pos 159109 (F-) 
ABC8-43241300L17AC011749.2100%pos 124036 (R-) AC011749.2100%pos 88107 (F+) 
ABC8-43257100P4AC011749.2100%pos 176079 (R+)  
ABC8-43744200I14AC011749.299.43%pos 133985 (R-) AC011749.298.01%pos 104786 (F+) 
ABC8-43777300N21AC011749.299.87%pos 30616 (R+) AC011749.299.79%pos 70137 (F-) 
ABC8-43778200H3 AC011749.299.86%pos 93518 (F-) 
ABC8-45709000C14AC017020.499.87%pos 41293 (R+) AC017020.499.86%pos 75933 (F-) 
ABC8-527213H10AC011749.2100%pos 165699 (R-) AC011749.299.53%pos 125613 (F+) 
ABC8-5696949L1AC017020.499.7%pos 50448 (R-) AC017020.498.31%pos 18930 (F+) 
ABC8-640622A20AC017020.499.74%pos 88711 (R-) AC017020.499.7%pos 49066 (F+) 
ABC8-662122N7AC017020.499.87%pos 75670 (R+) AC017020.4100%pos 115781 (F-) 
ABC8-683322E23 AC017020.499.86%pos 13990 (F-) 
ABC8-703322G20 AC011749.299.72%pos 199548 (F+) 
ABC8-703822O5AC011749.298.69%pos 138352 (R-)  
ABC8-718640H22AC011749.2100%pos 137471 (R-) AC011749.2100%pos 101600 (F+) 
ABC8-721340I12 AC011749.299.77%pos 179967 (F+) 
ABC8-722940D14AC011749.2100%pos 161565 (R+) AC011749.2100%pos 192102 (F-) 
ABC8-738140C17 AC011749.2100%pos 87101 (F-) 
ABC8-757022B6AC017020.499.86%pos 63333 (R+) AC017020.499.84%pos 97895 (F-) 
ABC8-773522F4AC011749.299.67%pos 117454 (R+) AC011749.2100%pos 153815 (F-)