Submitted SNP(ss) Details: ss853230

Submitted SNP(ss) Details: ss853230

Submitter
Handle	SC_JCM
Submitter SNP ID	AL163538.2_108274
RefSNP(rs#)	rs679674
Submitted Batch ID	19-JUL-2000
Submitted Date	Jul 27, 2000
Publication Cited	N.D.
First entry to dbSNP	Jul 27 2000 12:00:00:000AM

Resource Links
GenBank Accession	AL163538 AC026484
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D
Submission report	view

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	Overlap_SNPs_by_SsahaSNP
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele
SNP Class	single base
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 4
Genotype Submission	individual count: 270
Haplotype	N.D.

Comment
seqversion:AL163538.2position:108274unfin_quality:97seqversion:AC026484.4position:173941unfin_quality:45

Fasta sequence (Legend)

 GGATTTCTTT CTCCACTATG CAGCCATTAA AGACTGACCT TTGAGCTTTC AGAACAACCA
 GTTTGCAGAA CCTGACAGTG TTAATGATTC TCTCTTCTAT GTGCTGGTAA CCTTTGCTCT
 GATTGCTGCA TGCCAGGTAA TTAGAGCACA GTGCATGATA GCACTAAAAC ATGTGGCACA
 GACTATATTA TACACACAAA
 M
 CTAAATGTGT GTATACTGCA GATGTTGGGC TTTTTAACCA TGTTTTACTT GTATGTATGA
 GTTTTGCCCT CGGAATGAAA GTGACCCAAG CAAAAGTAGC CAGGGCCCAT AGAGTAGAGT
 GACACAATGC TGGCCCAAGC CCTTCCTCTG ACCTTTCCCC TCAGTGTGGC CTTCTCATTT
 TGAAGGACAA GGGCTATGTC

Submitted Frequency for ss853230

There is no frequency submission for ss853230.

dbSNP summary of Genotypes for ss853230

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	118	118	A=0.992	C=0.008	A/A=0.983 A/C=0.017	Pr(chiSq=0.008,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	88	88	A=1.000		A/A=1.000	Pr(chiSq=0.000,df=) =0.000	Genotype Freq.
HapMap-JPT	90	90	A=1.000		A/A=1.000	Pr(chiSq=0.000,df=) =0.000	Genotype Freq.
HapMap-YRI	112	112	A=0.938	C=0.062	A/A=0.875 A/C=0.125	Pr(chiSq=0.253,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss853230

Submitter:	CSHL-HAPMAP	Batch:	r23_ch13_HCB_perlegen:genotyping_1.0.0	Probe:	4863410

Population ID -Class	Individual By Genotype
Population ID -Class	A/A								A/C	C/C	N/N
HapMap-HCB - EAST ASIA	NA18526	NA18524	NA18558	NA18532	NA18561	NA18562	NA18537	NA18603			NA18529
	NA18540	NA18605	NA18542	NA18545	NA18572	NA18547	NA18609	NA18550
	NA18608	NA18552	NA18611	NA18555	NA18564	NA18566	NA18563	NA18570
	NA18612	NA18571	NA18620	NA18621	NA18594	NA18622	NA18573	NA18623
	NA18576	NA18577	NA18624	NA18579	NA18632	NA18582	NA18633	NA18635
	NA18592	NA18636	NA18593	NA18637
Sample(N): 45	44								0	0	1

Submitter:	CSHL-HAPMAP	Batch:	r23_ch13_YRI_perlegen:genotyping_1.0.0	Probe:	4863410

Population ID -Class	Individual By Genotype
Population ID -Class	A/A								A/C	C/C	N/N
HapMap-YRI	NA18500	NA18502	NA18503	NA18505	NA18504	NA18859	NA18515	NA18517	NA18501	NA18860	NA18507
	NA18516	NA18521	NA18522	NA18872	NA18870	NA18871	NA18854	NA18852	NA18506		NA18523
	NA18853	NA18857	NA18855	NA18856	NA18863	NA18861	NA18862	NA18914	NA18508		NA19210
	NA18912	NA18913	NA19094	NA19093	NA19092	NA19103	NA19102	NA19101	NA18858		NA19144
	NA19139	NA19137	NA19138	NA19202	NA19201	NA19173	NA19172	NA19171	NA19200
	NA19205	NA19204	NA19203	NA19211	NA19209	NA19208	NA19206	NA19207	NA19140
	NA19161	NA19159	NA19160	NA19221	NA19222	NA19223	NA19120	NA19116	NA19129
	NA19119	NA19142	NA19141	NA19154	NA19152	NA19153	NA19145	NA19143	NA19127
	NA19132	NA19131	NA19130	NA19100	NA19099	NA19098	NA19194	NA19193	NA19128
	NA19192	NA19240	NA19238	NA19239
Sample(N): 90	76								9	1	4

Submitter:	CSHL-HAPMAP	Batch:	r23_ch13_CEU_perlegen:genotyping_1.0.0	Probe:	4863410

Population ID -Class	Individual By Genotype
Population ID -Class	A/A								A/C	C/C	N/N
HapMap-CEU	NA07348	NA07357	NA10830	NA10831	NA10835	NA10838	NA10839	NA10846	NA12873		NA07034
	NA10847	NA10851	NA10854	NA10855	NA10856	NA10857	NA10859	NA10860
	NA10861	NA10863	NA11829	NA11830	NA11831	NA11832	NA11839	NA11840
	NA11881	NA11882	NA11992	NA11993	NA11994	NA11995	NA12003	NA12004
	NA12005	NA12006	NA12043	NA12044	NA12056	NA12057	NA12144	NA12145
	NA12146	NA12154	NA12155	NA12156	NA12234	NA12236	NA12239	NA12248
	NA12249	NA12264	NA12750	NA12751	NA12752	NA12753	NA12760	NA12761
	NA12762	NA12763	NA12801	NA12802	NA12812	NA12813	NA12814	NA12815
	NA12864	NA12865	NA12872	NA12874	NA12875	NA12878	NA12891	NA12892
	NA06985	NA06991	NA06993	NA06994	NA07000	NA07019	NA07022	NA07029
	NA07048	NA07055	NA07056	NA07345	NA12707	NA12716	NA12717	NA12740
Sample(N): 90	88								1	0	1

Submitter:	CSHL-HAPMAP	Batch:	r23_ch13_JPT_perlegen:genotyping_1.0.0	Probe:	4863410

Population ID -Class	Individual By Genotype
Population ID -Class	A/A								A/C	C/C	N/N
HapMap-JPT	NA18942	NA18940	NA18951	NA18943	NA18947	NA18944	NA18945	NA18949
	NA18948	NA18952	NA18956	NA18964	NA18953	NA18968	NA18959	NA18969
	NA18960	NA18961	NA18972	NA18965	NA18973	NA18966	NA18975	NA18967
	NA18976	NA18978	NA18970	NA18980	NA18995	NA18981	NA18971	NA18974
	NA18987	NA18990	NA18991	NA18994	NA18992	NA18997	NA18998	NA19000
	NA19005	NA18999	NA19007	NA19003	NA19012
Sample(N): 45	45								0	0	0

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Revised: May 25, 2006 1:38 PM .