Sung-Hou Kim Publications (Revised 5-23-06)

2006-1998   1997-1987   1986-1976   1975-1965

316. Chandonia, J. -M., Kim, S. -H., & Brenner, S. E. Target selection and deselection at the Berkeley Structural Genomics Center. Prot. Struc. Func. & Bio. 62: 356-370. (2006).

315. Kim, J. -S., Shin, D. -H., Pufan, R., Huang, C., Yokota, H., Kim, R., & Kim, S. -H. Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning. Prot. Struc. Func. & Bio. 62: 322-328. (2006).

314. Sims, G. E. & Kim, S. -H. A method for evaluating the structural quality of protein models by using HOPP scoring. Proc. of the Nat. Acad. Sciences. 103(12): 4428-4432. (2006). 

313. Chandonia, J. -M. & Kim, S. -H. Structural proteomics of minimal organisms: Conservation of protein fold usage and evolutionary implications. BMC Structural Biology. 6:7 (2006).

312. Kim, S. -H., Shin, D. -H., Liu, J., Oganesyan, V., Chen, S., Xu, Q. S., Kim, J. -S., Das, D., Schulze-Gahmen, U., Holbrook, S. R., Holbrook, E. L., Martinez, B., Oganesyan, N., DeGiovanni, A., Lou, Y., Henriquez, M., Huang, C., Jancarik, J., Pufan, R., Choi, I. -G., Chandonia, J. M., Hou, J., Gold, B., Yokota, H., Brenner, S. E., Adams, P. D. & Kim, R. Structural genomics of minimal organisms and protein fold space. J. Struc. Func. Gen.6: 63-70. (2005).

311. Liu, J., Lou, Y., Yokota, H., Adams, P. D., Kim, R. & Kim, S. -H. Crystal structures of an NAD Kinase from Archaeglobus fulgidus in complex with ATP, NAD, or NADP. J. Mol. Biol. 354: 289-303. (2005).

310. Oganesyan, N., Kim, S. -H. & Kim, R. On-column protein refolding for crystallization. J. Struc. Func. Gen. 6: 177-182. (2005).

309. Schulze-Gahmen, U., Aono, S., Chen, S., Yokota, H., Kim, R., & Kim, S. -H. Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function. Acta Cryst. D61: 1343-1347. (2005).

308. Xu, S. X., Jancarik, J., Lou, Y., Kuznetsova, K., Yakunin, A., Yokota, H., Adams, P., Kim, R., & Kim, S. H. Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate. J. Struc. Func. Gen. 6: 269-279. (2005).

307. Liu, J., Huang, C., Shin, D. -H., Yokota, H., Jancarik, J., Kim, J. -S., Adams, P. D., Kim, R., & Kim, S. -H. Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: Structural insight into DNA binding and dimerization. J. Mol. Biol.350: 987-996. (2005).

306. Kim, S. -H., Shin, D. H., Wang, W., Adams, P. D., Chandonia, J. -M. Overview of structural genomics: landscape, premises, and current direction. Structural Genomics and  High Throughput Structural Biology. (Ed. by Michael Sundstrom, et al). Taylor & Francis Group. pp.1-18. (2005).

305. Oganesyan, V., Huang, C., Adams, P. D., Jancarik, J., Yokota, H., Kim, R., Kim, S. -H. Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution. Acta Cryst. F61: 640-646. (2005).

304. Shin, D. H., Oganesyan, N., Jancarik, J., Yokota, H., Kim, R., Kim, S. -H. Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J. Bio. Chem. 280(18): 18326-18335. (2005).

303. Oganesyan, V., Oganesyan, N., Adams, P. D., Jancarik, J., Yokota, H., Kim, R., Kim, S. -H. Crystal structure of the “PhoU-Like” phosphate uptake regulator from Aquifex aeolicus. J. Bacteriology. 187: 4238-4244. (2005).

302. Liu, J., Oganesyan, N., Shin, D. -H., Jancarik, J., Yokota, H., Kim, R., Kim, S. -H. Structural characterization of an iron-sulfur cluster assembly protein Iscu in a Zinc-bound form. Proteins: Struct. Func. & Bioinf. 59: 875-881. (2005).

301. Liu, J., Lou, Y., Yokota, H., Adams, P., Kim, R., Kim, S. -H. Crystal structure of a PhoU protein homologue: A new class of metalloprotein containing multinuclear iron clusters. J. Bio. Chem. 280 (16): 15960-15966. (2005).

300. Kim, J. -S., DeGiovanni, A., Jancarik, J., Adams, P. D., Yokota, H., Kim, R., Kim, S. -H. Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications. Proc. of the Nat. Acad. Sciences. 102: 3248-3253. (2005).

299. Hou, J., Jun, S. -R., Zhang, C., Kim, S. -H. Global mapping of the protein structure space and application in structure-based inference of protein function. Proc. of the Nat. Acad. Sciences. 102: 3651-3656. (2005).

298. Card, G. L., Blasdel, L., England, B. P., Zhang, C., Suzuki, Y., Gillette, S., Fong, D., Ibrahim, P. N., Artis, D. R., Bollag, G., Milburn, M., Kim, S. -H., Schlessinger, J., Zhang, K. Y. J. A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design. Nature Biotech. (in press). (2005).

297. Sims, G. E., Choi, I. -G., Kim, S. -H. Protein conformational space in higher order phi-psi maps. Proc. of the Nat. Acad. Sciences. 102: 618-621. (2005).

296. Das, D., Oganesyan, N., Yokota, H., Pufan, R., Kim, R., Kim, S. -H. Crystal structure of the conserved hypothetical protein MPN330 (GI:1674200) from Mycoplasma Pneumoniae. Proteins: Struct. Func. & Bioinf. 58: 504-508. (2005).

295. Wang, W., Kim, R., Kim, S-H. Crystal structure of flavin binding to FAD Synthetase of T. maritima. Proteins: Struc. Func. & Bioinf. 58: 246-248. (2005).

294. Oganesyan, N., Kim, S. -H., Kim, R. On-column chemical refolding of proteins. Pharmagenomics. Sept: 22-25. (2004).

293. Card, G. L., England, B. P., Suzuki, Y., Fong, D., Powell, B., Lee, B., Luu, C., Tabrizizad, M., Gillette, S., Ibrahim, P. N., Artis, D., Bollag, G., Milburn, M., Kim, S. -H., Schlessinger, J., Zhang, K. Y. J. Structural basis for the activity of drugs that inhibit phosphodiesterases. Structure. 12: 2233-2247. (2004).

292. Chen, S., Yakunin, A. F., Kuznetsova, E., Busso, D., Pufan, R., Proudfoot, M., Kim, R., Kim, S. -H. Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii. J. Bio. Chem. 279 (30): 31854-31862. (2004).

291. Jancarik, J., Pufan, R., Hong, C., Kim, S. -H., Kim, R. Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins. Acta. Crystal. Sec. D. D60: 1670-1673. (2004).

290. Shin, D.-H., Brandsen, J., Jancarik, J., Yokota, H., Kim, R., Kim, S.-H. Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. J. Mol. Biol. 341: 227-239. (2004).

289. Zhang, K.Y.J., Card, G., Suzuki, Y., Artis, D.R., Fong, D., Gillette, D.H., Neiman, J., West, B., Zhang, C., Milburn, M., Kim, S.-H., Schlessinger, J., Bollag, G. A glutamine switch mechanism for nucleotide selectivity by Phosphodiesterases. Molecular Cell. 15: 279-286. (2004).

288. Shin, D. -H., Lou, Y., Jancarik, J., Yokota, H., Kim, R., Kim, S. -H. Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain. Proc. of the Nat. Acad. Sciences. 101: 13198-13203. (2004).

287. Chen, S., Shin, D-H., Pufan, R., Kim, R., Kim, S-H. Crystal structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087) at 2.2 Å resolution. Proteins: Struc. Func. and Bioinf. 56: 839-843. (2004).

286. Chen, S., Jancarik, J., Yokota, H., Kim, R., Kim, S-H. Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): A novel fold with a conserved sequence motif. Proteins: Struc. Func. and Bioinf. 55: 785-791. (2004).

285. Liu, J., Yokota, H., Kim, R., Kim, S-H. A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to NusB Proteins. Proteins: Struc. Func. and Bioinf. 55: 1082-1086. (2004).

284. Busso, D., Kim, R., Kim, S-H. Using an Escherichia coli cell-free extract to screen for soluble expression of recombinant proteins. J. Struct. and Func. Genomics. 5: 69-74. (2004).

283. Xu, Q. S., Shin, D-H., Pufan, R., Yokota, H., Kim, R., Kim, S-H. Crystal structure of a phosphotransacetylase from Streptococcus pyogenes. Proteins: Struc. Func. and Bioinf. 55: 479-481. (2004).

282. Shin, D.-H., Choi, I.-G., Busso, D., Jancarik, J., Yokota, H., Kim, R., Kim, S.-H. Structure of OsmC from Escherichia coli: a salt-shocked-induced protein. Acta Crystal. Sec. D. D60: 903-911. (2004).

281. Oganesyan, V., Pufan, R., DeGiovanni, A., Yokota, H., Kim, R., Kim, S.-H. Structure of the putative DNA-binding protein SP_1288 from Streptococcus pyogenes. Acta Cryst. Sec. D. D60: 1266-1271. (2004).

280. Choi, I.-G., Kwon, J., Kim, S.-H. Local feature frequency profile: A method to measure structural similarity in proteins. Proc. of the Nat. Acad. Sciences. 101: 3797-3802. (2004).

279. Shin, D.-H., Nguyen, H.H., Jancarik, J., Yokota, H., Kim, R., Kim, S.-H. Crystal structure of NusA from thermotoga maritima and functional implication of the N-Terminal domain. Biochem. 42: 13429-13437. (2003).

278. Moshinsky, D., Bellamacina, C., Boisvert, Da., Huang, P., Hui, T., Jancarik, J., Kim, S.-H., Rice, A. SU9516: Biochemical characterization of Cdk inhibition and crystal structure in complex with Cdk2. Biochem. & Biophys. Res. Comm. 310: 1026-1031. (2003).

277. Wang, W., Kim, S.-H. Chemotaxis Receptor in bacteria: Transmembrane Signaling, Sensitivity, Adaptation, and Receptor Clustering. Handbook of Cell Signaling 1: 197-202. (2003).

276. Kim, S.-H., Shin, D.-H., Choi, I.-G., Schulze-Gahmen, U., Chen, S., Kim, R. Structure-based functional inference in structural genomics. J. Struct. & Func. Genomics. 4: 129-135. (2003).

275. Sims, G., Kim, S.-H. Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes. Nuc. Acids Res. 31 (No. 19): 5607-5616. (2003).

274. Liu, J., Wang, W., Shin, D.-H., Yokota, H., Kim, R., Kim, S.-H. Crystal Structure of tRNA (m1G37) Methyltransferase from Aquifex aeolicus at 2.6 A Resolution: A Novel Methyltransferase Fold. Proteins: Struc., Func., & Gen. 53: 326-328. (2003).

273. Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.-H.  Crystal structure of a flavin-binding protein from thermotoga maritima. Proteins: Struc., Func., & Gen. 52: 633-635. (2003).

272. Choi, I.-G., Shin, D.-H., Brandsen, J., Jancarik, J., Busso, D., Yokota, H., Kim, R., Kim, S.-H. Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution. J. Struct. & Func. Gen. 4: 31-34. (2003).

271. Oganesyan, V., Busso, D., Brandsen, J., Chen, S., Jancarik, J., Kim, R., Kim, S.-H. Structure of the hypothetical protein AQ1354 from Aquifexaeolicus. Acta Cryst. Sec. D. Biol. Crystal. D59: 1219-1223. (2003).

270. Shin, D.-H., Roberts, A., Jancarik, J., Yokota, H., Kim, R., Wemmer, D., Kim, S.-H. Crystal structure of a phosphatase with a unique substrate binding domain from thermotoga maritima. Prot. Sci. 12: 1464-1472. (2003).

269. Kim, R., Lai, L., Lee, H.-H., Cheong, G.-W., Kim, K.K., Wu, Z., Yokota, H., Marqusee, S., Kim, S.-H. On the mechanism of chaperone activity of the small heat-shock protein of methanococcus jannaschii. Proc. of the Nat. Acad. Sciences. 100: 8151-8155. (2003).

268. Busso, D., Kim, R.,Kim, S.-H. Expression of soluble recombinant proteins in a cell-free system using a 96-well format. J. Biochem. Biophys. Methods. 55: 233-240. (2003).

267. Hou, J., Sims, G., Zhang, C.,  Kim, S.-H. A global representation of the protein fold space. Proc. of the Nat. Acad. Sciences. 100: 2386-2390. (2003).

266. Schulze-Gahmen, U., Pelaschier, J., Yokota, H., Kim, R., Kim, S.-H. Crystal structure of a hypothetical protein, TM841 of thermotoga maritima, reveals its function as a fatty acid-binding protein. Proteins: Struc., Func., & Gen. 50: 526-530. (2003).

265. Zhang, C., Kim, S.-H. Overview of structural genomics: from structure to function. Curr. Opin. in Chem. Bio. 7: 28-32. (2003).

264. Muller-Dieckmann, H. J., Kim, S.-H. Structure-function relationships: chemotaxis and ethylene receptors. Histidine Kinases in Signal Transduction. 6: 123-141. (2003).

263. Martinez-Cruz, L. A., Dreyer, M. K., Boisvert, D.C., Yokota, H., Martinez-Chantar, M. L., Kim, R., Kim, S.-H. Crystal structure of MJ1247 Protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase. Structure. 10: 195-204. (2002).

262. Huang, L., Hung, L., Odell, M., Yokota, H., Kim, R., Kim, S.-H. Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii. J. Struct. & Func. Gen. 2: 121-127. (2002).

261. Wang, W., Cho, H., Kim, R., Jancarik, J., Yokota, H., Nguyen, H., Grigoriev, I., Wemmer, D.E., Kim, S.-H. Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic “snapshots” of intermediate states. J. Mol. Biol. 319: 421-431. (2002).

260. Kim, S.-H., Wang, W., Kim, K. K. Dynamic and clustering model of bacterial chemotaxis receptors: Structural basis for signaling and high sensitivity. Proc. of the Nat. Acad. Sciences. 99: 11611-11615. (2002).

259. Shin, D.-H., Yokota, H., Kim, R., Kim, S.-H. Crystal structure of conserved hypothetical protein Aq 1575 from Aquifex aeolicus. Proc. of the Nat. Acad. Sciences. 99: 7980-7985. (2002).                                 

258. Schulze-Gahmen, U., Kim, S.-H. Structural basis for CDK6 activation by a virus-encoded cyclin. Nature Struc. Bio. 9 (3): 177-181. (2002).

257. Zhang, C., Hou, J., Kim, S.-H. Fold prediction of helical proteins using torsion angle dynamics and predicted restraints. Proc. of the Nat. Acad. Sciences.  99(6): 3581-3585. (2002).

256. Shin, D.-H., Yokota, H., Kim, R., Kim, S.-H. Crystal structure of a conserved hypothetical protein from Escherichia coli. J. Struct. & Func. Genomics. 2: 53-66. (2002).

255. Busso, D., Kim, R., Kim, S.-H. Screening for soluble expression of recombinant proteins using the RTS 100 HY in a 96-well format. Biochemica. 4: 33-35. (2002).

254. Du, X., Wang, W., Kim, R., Yokota, H., Nguyen, H., Kim, S.-H. Crystal structure and mechanism of catalysis of a pyrazinamidase from pyrococcus horikoshii. Biochemistry. 40: 14166-14172. (2001).

253. Dreyer, M., Borcherding, D., Dumont, J., Peet, N., Tsay, J., Wright, P., Bitonti, A., Shen, J., and Kim, S.-H. Crystal Structure of Human Cyclin-Dependent Kinase 2 in Complex with the Adenine-Derived Inhibitor H717. J. Med. Chem. 44: 524-530. (2001).  

252. Cho, H., Wang, W., Kim, R.,Yokota, H., Damo, S,. Kim,S. -H., Wemmer, D., Kustu, S.,Yan., D. BeF3 acts as a phosphate analog in proteins phosphorylated on aspartate:  Structure of a BeF3 complex with phosphoserine phosphatase. Proc. of the Nat. Acad. Sciences.  98(15): 8525-8530.  (2001).

251. Grigoriev, I.., Zhang, C. and Kim, S.-H. Sequence-based detection of distantly-related proteins with the same fold. Protein Engineering. 14(7): 101-104. (2001).

250. Du, X., Frei, H., Kim, S.-H.. Comparison of Nitrophenylethyl and Hydroxyphenacyl Caging Groups. Bipolymers (Biospectroscopy), Vol 2, 147 - 149 (2001).

249. Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.-H. Crystal Structure of Phosphoserine Phosphosphatase from Methanococcus jannaschii a Hypothermophile,at 1.8 Å Resolution . Structure. 9: 65-71  (2001).

248. Du, X., Choi, I.-G., Kim, R., Wang, W., Jancarik, J., Yokota, H., Kim, S.-H. Crystal structure of an intracellular protease from pyrococcus horikoshii at 2-A resolution.  Proc. Of The Nat. Acad. Sciences. 97(26) 14079-14084 (2000).

247. Kim, S.-H. Structural Basis for Molecular Communication. New Frontiers of Science and Technology Structural Basis for Molecular Communication (Edited by L.Esaki, Frontiers Science Series) 31 ISSN 4-946443-60-6 Universal Academy Press, Inc. (2000).

246. Zhang, Z., Berry, E., Huang, L.-S., Kim, S.H. Mitochondrial Cytochrome bc1 Complex.   Subcellular Biochemistry, Volume 35: Enyzme-Catalyzed Electron and Radical Transfer, edited by Holzenburg and Scrutton,  Kluwer Academic/ Plenum Publishers, New York, 541 - 580  (2000).

245. Adler, M., Davey, D.D., Phillips, G.B., Kim, S.-H., Jancarik, J., Rumennik, G., Light, D.R. and Marc Whitlow.   Preparation, Characterization and the Crystal Structure of the Inhibitor ZK-807834(CI-1031) Completed with Factor Xa.   Biochem. 39(41): 12534-12542 (2000).

244. Lai, L., Yokota, H., Hung, L.-W., Kim, R., and Kim, S.-H.   Crystal structure of archaeal RNase HII: A homologue of human major RNase H.   Structure 8: 897-904 (2000).

243. Zhang, C., Kim, S.H.   A Comprehensive Analysis of the Greek Key Motifs in Protein bBarrels and bSandwiches.   Protens: Struc. Func. and Gen. 40: 409-419 (2000).

242. Zhang, C., Kim, S.-H.   The Anatomy of Protein b-Sheet Topology.   J. Mol. Biol. 299: 1075-1089  (2000).

241. Kim, R., Yokota, H. and Kim, S.-H.   Electrophoresis of Proteins and Protein-Protein Complexes in a Native Agarose Gel.   Anal. Biochem. 282: 147-149 (2000).

240. Falke, J. and Kim, S.-H.. Structure of a conserved receptor domain that regulates kinase activity:  the cytoplasmic domain of bacterial taxis receptors.   Cur. Opin. in Struc.Bio. 10: 462-469 (2000).

239. Kim, S.-H.   Structural genomics of microbes:  an objective.  Curr. Opin. in Struc. Bio. 10: 380-383 (2000).

238. Zhang, C. and Kim, S.-H..   Environment-dependent residue contact energies for proteins.   Proc. Of The Nat. Acad. Sciences. 97(6): 2550-2555  (2000).

237.   Du, X., Frei, H. and Kim, S.-H..   The Mechanism of GTP Hydrolysis by Ras Probed Fourier Transform Infrared Spectroscopy.   J. Biol. Chem.  275(12): 8492-8500 (2000).

236.   Zhang, C. and Kim, S.-H..   The Effect of Dynamic Receptor Clustering on the Sensitivity of Biochemical Signaling.   Pacific Symposium on Biocomputing 5: 350-361 (2000).

235.   Meijer, L., Thunnissen, A., White, A., Garnier, M., Nikolic, M., Tsai, L.-H., Walter, J., Cleverley, K., Salinas, P., Wu, Y-Z, Biernat, J., Mandelkow, E-M, Kim, S-H, and G. Pettit.   Inhibition of cyclin-dependent kinases, GSK-3b and CK1 by hymenialdisine, a marine sponge constituent.   Chemistry & Biology 7: 51-63 (2000).

234.   Wang, H., Boisvert, D., Kim, K.-K., Kim, R. and Kim, S.-H..   Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution. EMBO Journal 19(3): 317-323 (2000).

233. Kim, S.S., Choi, I.-G., Kim, S.-H. and Yeon Gyu Yu. Molecular cloning, expression and characterization of a thermostable glutamate racemase from a hyperthermophilic bacterium, Aquifex pyrophilus. Extremophiles 3: 175-183 (1999).

232. Hwang, K.Y., Cho, C.-S., Kim, S.S., Baek, K., Kim, S.-H., Yu, Y.G. and Yunje Cho.   Crystallization and preliminary X-ray analysis of glutamate racemase from Aquifex pyrophilus, a hyperthermophilic bacterium.   Acta Crys. D55: 927-928 (1999).

231. Kim, S.-Y., Hwang, K.Y., Kim, S.-H., Sung, H.-C., Han, Y.S. and Yunje Cho.   Structural Basis for Cold Adaptation.  Sequence, Biochemical Properties and Crystal Structure of Malate Dehydrogenase from a Psychrophile Aquaspirillium Arcticum. The Journal of Biological Chemistry 274(17): 11761-11767 (1999).

230. Muller-Dieckmann, H.-J., Grantz, A. and Kim, S.-H..   The structure of the signal receiver domain of the Arabidopsis thaliana ethelene receptor ETR1.   Structure 7(12): 1547-1556 (1999).

229. Grigoriev, I. and Kim, S.-H..   Detection of protein fold similarity based on correlation of amino acid properties.   PROC. OF THE NAT. ACAD. SCIENCES 96(25): 14318-14323 (1999).

228. Berry, E.A., Huang, Li-Shar, Zhang, Zhaoleiand Kim, S.-H..   The Structure of the Avian Mitochondrial Cytochrome bc1 Complex. Journal of Bioenergetics and Biomembranes 31(3): 177-190 (1999).

227. Berry, E.A., Zhang, Z., Huang, L.-S., and Kim, S.-H..   Structures of quinone-binding sites in bc complexes: functional implications.   Biochemical Society Transactions 27(4): 565-572 (1999).

226. Kim, K.K., Yokota, H. and Kim, S.-H.. Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor.   Nature 400: 787-792 (1999).

225. Hwang, K.Y., Chung, J.H., Kim, S.-H., Han, Y.S. and Yunje Cho.   Structure-based identification of a novel NTPase from Methanococcus jannaschii.   Nature Structure Biology 6(7): 691-696 (1999).

224. Dubchak, I., Muchnik, I., Mayor, C., Dralyuk, I. and Kim, S.-H..   Recognition of a Protein Fold in the Context of the SCOP Classification.   PROTEINS: Structure, Function, and Genetics 35: 401-407 (1999).

223. Wang, H., Yokota, H., Kim, R., and Kim, S.-H..   Expression, purification and preliminary X-ray analysis of a fibrillin homolog from Methanococcus jannaschii, a hyperthermophile.   Acta Cryst. D55: 338-340 (1999).

222. Schulze-Gahmen, U., Jau, U.J. and Kim, S.-H..   Crystal structure of a viral cyclin, a positive regulator of cyclin-dependent kinase 6.   Structure 7(3): 245-254 (1999).

221. Chi, Y.-I., Martinez-Cruz, L., Jancarik, J., Swanson, R., Robertson, D. and Kim, S.-H.. Crystal structure of the b-glycosidase from the hyperthermophile Thermosphaera aggregans: insights into its activity and thermostability.   FEBS Letters 445: 375-383 (1999).

220. Hung, L.-W., Kohmura, M., Ariyoshi, Y. and Kim, S.-H..   Structural Differences in D and L-monellin in the Crystals of Racemic Mixture.   J. Mol. Biol. 285: 311-321 (1999).

219. Choi, I.-G., Bang, W.-G., Kim, S.-H. and Yeon Gyu Yu.   Extremely Thermostable Serine-type Protease from Aquifex pyrophilus.   Journal of Biological Chemistry 274(2): 881-888 (1998).

218. Hung, I., Wang, I., Nikaido, K., Liu, P., Ames, G. and Kim, S.-H..   Crystal structure of the ATP-binding subunit of an ABC transporter.   Nature 396: 703-707 (1998).

217. Zarembinski, T., Hung, L., Mueller-Dieckmann, H-J., Kim, K., Yokota, H., Kim, R., and Kim, S.-H..   Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics.   Proc. Natl. Acad. Sci. USA 95: 15189-15193 (1998).

216. Goldman, S., Kim, R., Hung, L.-W., Jancarik, J. and Kim, S.-H..   Purification, crystallization and preliminary X-ray crystallographic analysis of Pyrococcus furiosus DNA polymerase.   Acta Cryst. D54: 986-988 (1998).

215. Kim, K.K., Hung, L.-W., Yokota, H., Kim, R. and Kim, S.-H..   Crystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 Å resolution.   Proc. Natl. Acad. Sci. USA 95: 10419-10424 (1998).

214. Gray, N. S., Wodicka, L., Thunnissen, A.-M. W. H., Norman, T. C., Kwon, S., Espinoza, F. H., Morgan, D. O., Barnes, G., LeClerc, S., Meijer, L., Kim, S.-H., Lockhart, D. J., and Schultz, P. G. Exploiting Chemical Libraries, Structure, and Genomics in the Search for Kinase Inhibitors. Science 281: 533-538 (1998)

213. Dubchak, I., Muchnik, I. and Kim, S.-H..   Assignment of Folds for Proteins of Unknown Function in Three Microbial Genomes.   Microbial & Comparative Genomics 3(3): 171-175 (1998).

212. Kim, K.K., Kim, R. and Kim, S.-H..   Crystal structure of a small heat shock protein. Nature 394: 595-599 (1998).

211. Grantz, A.A., Müller-Dieckman, H.-J. and Kim, S.-H..   Subcloning, crystallization and Preliminary X-Ray Analysis of the Signal Receiver Domain of ETR1, an Ethylene Receptor from Arabidopsis thaliana.   Acta Cryst. D54: 690-692 (1998).

210. Kim, S.-H..   Shining a light on structural genomics.   Nature Struct. Biol. 5 Supplement: 643-645 (1998).

209. Goldman, S., Kim, R., Hung, L.-W., Jancarik, J. and Kim, S.-H..   Purification, crystallization and preliminary X-ray crystallographic analysis of Pyrococcus furiosus DNA polymerase.   Acta Cryst. D54: 986-988 (1998).

208. Kim, R., Kim, K.K., Yokota, H. and Kim, S.-H..   Small heat shock protein of Methanococcus jannaschii, a hyperthermophile. Proc. Natl. Acad. Sci. USA 95: 9129-9133 (1998).

207. Kim, S.-H..   Structure-based inhibitor design for CDK2, a cell cycle controlling protein kinase.   Pure & Appl. Chem. 70(3): 555-565 (1998).

206. Hung, L.-W., Kohmura, M., Ariyoshi, Y. and Kim, S.-H..   Structure of an Enantiomeric Protein, d-Monellin at 1.8 Å Resolution. Acta Cryst. D54: 494-500 (1998).

205. Kamata, K., Kawamoto, H., Honma, T., Iwama, T. and Kim, S.-H..   Structural basis for chemical inhibition of human blood coagulation factor Xa.   Proc. Natl. Acad. Sci. USA 95: 6630-6635 (1998).

204. Zhang, Z., Huang, L., Shulmeister, V.M., Chi, Y.-I., Kim, K.K., Hung, L.-W., Crofts, A.R., Berry, E.A. and Kim, S.-H..   Electron transfer by domain movement in cytochrome bc1.   Nature 392: 677-684 (1998).

203. Huang, L., Hofer, F., Martin, G. S. and Kim, S.-H..   Structural basis for the interaction of Ras with RalGDS. Nature Struct. Biol. 5(6): 422-426 (1998).

202. Kim, K.K., Yokota, H., Santoso, S., Lerner, D., Kim, R. and Kim, S.-H..   Purification, Crystallization, and Preliminary X-Ray Crystallographic Data Analysis of Small Heat Shock Protein Homolog from Methanococcus jannaschii, a Hyperthermophile.   J. Struct. Biol. 121: 76-80 (1998).

201. Kim, R., Sandler, S.J., Goldman, S., Yokota, H., Clark, A.J. and Kim, S.-H..   Overexpression of archaeal proteins in Escherichia coli.   Biotechnology Letters 20(3): 207-210 (1998).

To obtain a copy of any of the above publications, contact Professor Sung-Hou Kim or his assistant Wilfredo Balza Jr.

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