R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|5031275|gb|AAD38143.1|AF139496_1 (AF139496) unknown [Prunus armeniaca]
Length = 204
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 922 (324.6 bits), Expect = 1.5e-91, P = 1.5e-91
Identities = 172/202 (85%), Positives = 188/202 (93%), Frame = +3
Query: 27 MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDV 206
MATKVYIVYYS YGHVEKLA EI KGAASVEGVEAKLWQV ETL ++VL K+GAPPKS+V
Sbjct: 1 MATKVYIVYYSMYGHVEKLAEEILKGAASVEGVEAKLWQVAETLQDDVLGKMGAPPKSEV 60
Query: 207 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQG 386
PII+PN+L+EADG LFGFPTRFG MAAQFKAFFD+TGGLWRTQALAGK AG FYST SQG
Sbjct: 61 PIISPNDLSEADGLLFGFPTRFGMMAAQFKAFFDSTGGLWRTQALAGKPAGIFYSTGSQG 120
Query: 387 GGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQPSEL 566
GGQETT LT+ITQLVHHG++FVPIGY+FG GMFE+E++KGGSPYGAGTYAGDG+RQPSEL
Sbjct: 121 GGQETTALTAITQLVHHGMVFVPIGYSFGAGMFEMEQIKGGSPYGAGTYAGDGTRQPSEL 180
Query: 567 ELAQAFHQGKYFAGIAKKLKGS 632
EL QAFHQGKYFAGIAKKLKGS
Sbjct: 181 ELQQAFHQGKYFAGIAKKLKGS 202
>gi|8885593|dbj|BAA97523.1| (AB026634) 1,4-benzoquinone reductase-like; Trp
repressor binding protein-like [Arabidopsis thaliana]
Length = 204
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 903 (317.9 bits), Expect = 1.5e-89, P = 1.5e-89
Identities = 170/202 (84%), Positives = 181/202 (89%), Frame = +3
Query: 27 MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDV 206
MATKVYIVYYS YGHVEKLA EI KGAASVEGVEAKLWQVPETL EE L+K+ APPKS+
Sbjct: 1 MATKVYIVYYSMYGHVEKLAEEIRKGAASVEGVEAKLWQVPETLHEEALSKMSAPPKSES 60
Query: 207 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQG 386
PIITPNEL EADGF+FGFPTRFG MAAQFKAF DATGGLWR QALAGK AG FYST SQG
Sbjct: 61 PIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRAQALAGKPAGIFYSTGSQG 120
Query: 387 GGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQPSEL 566
GGQETT LT+ITQLVHHG++FVPIGYTFG GMFE+E VKGGSPYGAGT+AGDGSRQP+EL
Sbjct: 121 GGQETTALTAITQLVHHGMLFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSRQPTEL 180
Query: 567 ELAQAFHQGKYFAGIAKKLKGS 632
EL QAFHQG+Y A I KKLKGS
Sbjct: 181 ELQQAFHQGQYIASITKKLKGS 202
>gi|7445353|pir||T05751 hypothetical protein M4I22.80 - Arabidopsis thaliana
>gi|3269288|emb|CAA19721.1| (AL030978) putative protein
[Arabidopsis thaliana] >gi|7269580|emb|CAB79582.1| (AL161566)
putative protein [Arabidopsis thaliana]
Length = 211
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 211
0 50 100 150 200
Plus Strand HSPs:
Score = 848 (298.5 bits), Expect = 1.0e-83, P = 1.0e-83
Identities = 164/207 (79%), Positives = 179/207 (86%), Frame = +3
Query: 27 MATKVYIVY----YSTYGHVE--KLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGA 188
MATKVYIVY + G ++ KLA+EI KGAASV+GVEA LWQVPETL E+VL+K+ A
Sbjct: 1 MATKVYIVYVKIIFCLSGAIDNLKLAQEIRKGAASVDGVEAILWQVPETLQEDVLSKMSA 60
Query: 189 PPKSDVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFY 368
PPKSD PIITPNEL EADGF+FGFPTRFG MAAQFKAF DATGGLWRTQ LAGK AG FY
Sbjct: 61 PPKSDAPIITPNELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFY 120
Query: 369 STSSQGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGS 548
ST SQGGGQETT LT+ITQLVHHG+IFVPIGYTFG GMFE+E VKGGSPYGAGT+AGDGS
Sbjct: 121 STGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGS 180
Query: 549 RQPSELELAQAFHQGKYFAGIAKKLKG 629
RQP+ELEL QAFHQGKY A I+KKLKG
Sbjct: 181 RQPTELELGQAFHQGKYIAAISKKLKG 207
>gi|12484052|gb|AAG53945.1|AF304462_1 (AF304462) quinone-oxidoreductase QR2
[Triphysaria versicolor]
Length = 205
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
Plus Strand HSPs:
Score = 844 (297.1 bits), Expect = 2.7e-83, P = 2.7e-83
Identities = 156/201 (77%), Positives = 177/201 (88%), Frame = +3
Query: 27 MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDV 206
MATKVYIVYYSTYGHVE+LA+EI+KGA SV VE KLWQVPE L +EVL K+ APPKSDV
Sbjct: 1 MATKVYIVYYSTYGHVERLAQEIKKGAESVGNVEVKLWQVPEILSDEVLGKMWAPPKSDV 60
Query: 207 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQG 386
P+ITP+EL EADG +FGFPTRFG MAAQFKAFFD+TGGLW+TQALAGK AG F+ST +QG
Sbjct: 61 PVITPDELVEADGIIFGFPTRFGMMAAQFKAFFDSTGGLWKTQALAGKPAGIFFSTGTQG 120
Query: 387 GGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSE 563
GGQETT LT+ITQL HHG+I+VPIGYTFG MF +EK+KGGSPYGAGT+AG DGSRQPS+
Sbjct: 121 GGQETTALTAITQLTHHGMIYVPIGYTFGADMFNMEKIKGGSPYGAGTFAGADGSRQPSD 180
Query: 564 LELAQAFHQGKYFAGIAKKLK 626
+EL QAFHQG Y AGI KK+K
Sbjct: 181 IELKQAFHQGMYIAGITKKIK 201
>gi|2564066|dbj|BAA22940.1| (D45900) LEDI-3 protein [Lithospermum
erythrorhizon]
Length = 201
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 763 (268.6 bits), Expect = 1.0e-74, P = 1.0e-74
Identities = 145/200 (72%), Positives = 169/200 (84%), Frame = +3
Query: 27 MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDV 206
MA K+YIVYYSTYGHV KLA E++KGA SV+GVE KLWQV ETLPE+VL K+ APPK D
Sbjct: 1 MAVKLYIVYYSTYGHVLKLAEEMKKGAESVDGVEVKLWQVAETLPEDVLGKMYAPPKGDA 60
Query: 207 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQG 386
PIITP+EL EADG+LFGFPTRFG M AQFKAFFD+TGGLW++ L GK AGFF S+ SQG
Sbjct: 61 PIITPDELAEADGYLFGFPTRFGMMPAQFKAFFDSTGGLWQSGGLVGKPAGFFISSGSQG 120
Query: 387 GGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSE 563
GGQETT LT+ITQLVHHG+I+VP G TFG G+ + E ++GG+ YGAGT+AG DG+RQP+E
Sbjct: 121 GGQETTALTAITQLVHHGMIYVPTGGTFGAGLHKNE-IRGGTLYGAGTFAGPDGARQPTE 179
Query: 564 LELAQAFHQGKYFAGIAKKLK 626
LEL AFHQGKY AGI K+LK
Sbjct: 180 LELELAFHQGKYTAGIVKRLK 200
>gi|8843802|dbj|BAA97350.1| (AB020755) 1,4-benzoquinone reductase-like
[Arabidopsis thaliana]
Length = 207
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 710 (249.9 bits), Expect = 4.3e-69, P = 4.3e-69
Identities = 132/199 (66%), Positives = 159/199 (79%), Frame = +3
Query: 33 TKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPK-SDVP 209
TK+YIVYYS +GHVE +ARE+ +G SV VEA LWQVPETLPE++L K+ A P+ DVP
Sbjct: 4 TKIYIVYYSLHGHVETMAREVLRGVNSVPDVEATLWQVPETLPEKILEKVKAVPRPDDVP 63
Query: 210 IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGG 389
I P +L EADGF+FGFP+RFG MA+Q FFD T LW TQALAGK AG F+ST GG
Sbjct: 64 DIRPEQLAEADGFMFGFPSRFGVMASQVMTFFDNTNDLWTTQALAGKPAGIFWSTGFHGG 123
Query: 390 GQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQPSELE 569
GQE T LT++T+L HHG+IFVP+GYTFG M+E+ +VKGGSPYG+GTYA DGSR+P+ELE
Sbjct: 124 GQELTALTAVTKLAHHGMIFVPVGYTFGKSMYEMGEVKGGSPYGSGTYAADGSREPTELE 183
Query: 570 LAQAFHQGKYFAGIAKKLK 626
+ QA + GKYFAGIAKKLK
Sbjct: 184 IQQANYHGKYFAGIAKKLK 202
>gi|2464905|emb|CAB16805.1| (Z99708) minor allergen [Arabidopsis thaliana]
>gi|7270624|emb|CAB80341.1| (AL161590) minor allergen [Arabidopsis
thaliana]
Length = 273
Frame 3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 703 (247.5 bits), Expect = 2.4e-68, P = 2.4e-68
Identities = 130/207 (62%), Positives = 165/207 (79%), Frame = +3
Query: 6 SSTALLPMATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLG 185
++ A + K+++V+YS YGHVE LA+ ++KG SVEGVEA L++VPETL +EV+ ++
Sbjct: 64 TTAAKISSPLKIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVEQMK 123
Query: 186 APPKS-DVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGF 362
AP K ++P IT ELT ADGFLFGFPTR+G MAAQ KAFFD+TG LW+ Q+LAGK AGF
Sbjct: 124 APVKDLEIPEITAAELTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLAGKPAGF 183
Query: 363 FYSTSSQGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGD 542
F ST +QGGGQETT T+ITQLVHHG++FVPIGYTFG GMF+++ ++GGSPYGAG +AGD
Sbjct: 184 FVSTGTQGGGQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAGD 243
Query: 543 GSRQPSELELAQAFHQGKYFAGIAKKL 623
GSR+ +E ELA A HQG Y A I K+L
Sbjct: 244 GSREATETELALAEHQGNYMAAIVKRL 270
>gi|4454993|gb|AAD21025.1| (AF106939) 1,4-benzoquinone reductase [Phanerochaete
chrysosporium]
Length = 201
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 576 (202.8 bits), Expect = 6.9e-55, P = 6.9e-55
Identities = 115/197 (58%), Positives = 141/197 (71%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPII 215
KV I+ YS YGH+ KLA E EK G A ++Q+PETLPEEVLAK+ APPK + P+I
Sbjct: 3 KVAIIIYSMYGHIAKLA-EAEKAGIEEAGGSATIYQIPETLPEEVLAKMHAPPKPEYPVI 61
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQ 395
TP +L E D F+FG PTR+G+ Q+KAF+DATGGLW ALAGK A F ST + GGGQ
Sbjct: 62 TPEKLPEFDAFVFGIPTRYGNFPGQWKAFWDATGGLWAQGALAGKYASVFVSTGTPGGGQ 121
Query: 396 ETTPLTSITQLVHHGLIFVPIGY-TFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELE 569
E+T L SI+ L HHG++FVP+GY T + L +V+GGSP+GAGT+AG DGSR PS LE
Sbjct: 122 ESTVLNSISTLTHHGIVFVPLGYSTTFAQLANLSEVRGGSPWGAGTFAGADGSRSPSALE 181
Query: 570 LAQAFHQGKYFAGIAKKL 623
L A QGKYF I KK+
Sbjct: 182 LELATAQGKYFWNIIKKV 199
>gi|1168402|sp|P42058|ALA7_ALTAL MINOR ALLERGEN ALT A 7 (ALT A VII)
>gi|1086045|pir||S43111 minor allergen - Alternaria alternata
>gi|467619|emb|CAA55069.1| (X78225) minor allergen [Alternaria
alternata]
Length = 204
Frame 3 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00894: 1..27
DOMO DM01333: 29..201
PRODOM PD006822: 1..54
PRODOM PD003171: 69..202
__________________
Plus Strand HSPs:
Score = 525 (184.8 bits), Expect = 1.7e-49, P = 1.7e-49
Identities = 113/201 (56%), Positives = 140/201 (69%), Frame = +3
Query: 27 MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPK-SD 203
MA K+ IVYYS YGH++K+A KG G +AKL+QV ETLP+EVL K+ APPK S
Sbjct: 1 MAPKIAIVYYSMYGHIKKMADAELKGIQEAGG-DAKLFQVAETLPQEVLDKMYAPPKDSS 59
Query: 204 VPIIT-PNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSS 380
VP++ P L E DG LFG PTR+G+ AQFK F+D TG W+ A GK AG F ST +
Sbjct: 60 VPVLEDPAVLEEFDGILFGIPTRYGNFPAQFKTFWDKTGKQWQQGAFWGKYAGVFVSTGT 119
Query: 381 QGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMF-ELEKVKGGSPYGAGTY-AGDGSRQ 554
GGGQETT +TS++ LV HG I+VP+GY M L++V GGSP+GAGT+ AGDGSRQ
Sbjct: 120 LGGGQETTAITSMSTLVDHGFIYVPLGYKTAFSMLANLDEVHGGSPWGAGTFSAGDGSRQ 179
Query: 555 PSELELAQAFHQGK-YFAGIAK 617
PSELEL A QGK ++ +AK
Sbjct: 180 PSELELNIAQAQGKAFYEAVAK 201
>gi|6319849 ref|NP_009930.1| FMN-binding protein; Ycp4p [Saccharomyces
cerevisiae] >gi|140449|sp|P25349|YCP4_YEAST HYPOTHETICAL 26.4 KD
PROTEIN IN CDC10-CIT2 INTERGENIC REGION >gi|280444|pir||S26733
hypothetical protein YCR004c - yeast (Saccharomyces cerevisiae)
>gi|3300|emb|CAA77443.1| (Z11113) hypothetical protein C247
[Saccharomyces cerevisiae] >gi|1907147|emb|CAA42341.1| (X59720)
YCR004c, len:247 [Saccharomyces cerevisiae]
Length = 247
Frame 3 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | | 247
0 50 100 150 200
Plus Strand HSPs:
Score = 514 (180.9 bits), Expect = 2.6e-48, P = 2.6e-48
Identities = 106/198 (53%), Positives = 137/198 (69%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPK-SDVPI 212
K+ I+ YSTYGH++ LA+ ++KG + G +A +++V ETLP+EVL K+ AP K D+P+
Sbjct: 3 KIAIITYSTYGHIDVLAQAVKKGVEAAGG-KADIYRVEETLPDEVLTKMNAPQKPEDIPV 61
Query: 213 ITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGG 392
T L E D FLFG PTRFG++ AQ+ AF+D TGGLW +L GKAAG F STSS GGG
Sbjct: 62 ATEKTLLEYDAFLFGVPTRFGNLPAQWSAFWDKTGGLWAKGSLNGKAAGIFVSTSSYGGG 121
Query: 393 QETTPLTSITQLVHHGLIFVPIGYTFG-GGMFELEKVKGGSPYGAGTYAG-DGSRQPSEL 566
QE+T ++ L HHG+IF+P+GY + +E+V GGSP+GAGT AG DGSR S L
Sbjct: 122 QESTVKACLSYLAHHGIIFLPLGYKNSFAELASIEEVHGGSPWGAGTLAGPDGSRTASPL 181
Query: 567 ELAQAFHQGKYFAGIAKKL 623
EL A QGK F AKKL
Sbjct: 182 ELRIAEIQGKTFYETAKKL 200
>gi|2507538|sp|P30849|WRBA_ECOLI TRP REPRESSOR BINDING PROTEIN
>gi|7429903|pir||B64842 trp repressor-binding protein - Escherichia
coli >gi|1787239|gb|AAC74089.1| (AE000202) trp repressor binding
protein; affects association of trp repressor and operator
[Escherichia coli K12] >gi|4062558|dbj|BAA35771.1| (D90737) Trp
repressor binding protein [Escherichia coli]
>gi|4062567|dbj|BAA35781.1| (D90738) Trp repressor binding protein
[Escherichia coli]
Length = 198
Frame 3 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
__________________
Annotated Domains:
DOMO DM00894: 1..25
DOMO DM01333: 27..194
PRODOM PD006822: 2..51
PRODOM PD003171: 64..196
__________________
Plus Strand HSPs:
Score = 511 (179.9 bits), Expect = 5.3e-48, P = 5.3e-48
Identities = 99/198 (50%), Positives = 137/198 (69%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPII 215
KV ++YYS YGH+E +AR + +GA+ V+G E + +VPET+P ++ K G ++ P+
Sbjct: 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVA 61
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQ 395
TP EL + D +FG PTRFG+M+ Q + F D TGGLW + AL GK A F ST + GGGQ
Sbjct: 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGGQ 120
Query: 396 ETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELEL 572
E T ++ T L HHG++ VPIGY +F++ +V+GG+PYGA T AG DGSRQPS+ EL
Sbjct: 121 EQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEEL 179
Query: 573 AQAFHQGKYFAGIAKKLKG 629
+ A +QG+Y AG+A KL G
Sbjct: 180 SIARYQGEYVAGLAVKLNG 198
>gi|2126096|pir||I59246 trp repressor binding protein - Escherichia coli
>gi|148264|gb|AAA24759.1| (M99166) trp repressor binding protein
[Escherichia coli]
Length = 198
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 505 (177.8 bits), Expect = 2.3e-47, P = 2.3e-47
Identities = 98/198 (49%), Positives = 136/198 (68%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPII 215
KV ++YYS YGH+E +AR + +GA+ V+G E + +VPET+P ++ K G ++ P+
Sbjct: 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-APVA 61
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQ 395
TP EL + D +FG PTRFG+M+ Q + F D TGGLW + AL GK A F ST + GGGQ
Sbjct: 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGGQ 120
Query: 396 ETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELEL 572
E T ++ T L HHG++ VPI Y +F++ +V+GG+PYGA T AG DGSRQPS+ EL
Sbjct: 121 EQTITSTWTTLAHHGMVIVPIAYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEEL 179
Query: 573 AQAFHQGKYFAGIAKKLKG 629
+ A +QG+Y AG+A KL G
Sbjct: 180 SIARYQGEYVAGLAVKLNG 198
>gi|7649820|dbj|BAA94098.1| (AP000422) trp repressor binding protein
[Escherichia coli O157:H7]
Length = 198
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 501 (176.4 bits), Expect = 6.1e-47, P = 6.1e-47
Identities = 98/198 (49%), Positives = 135/198 (68%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPII 215
KV ++YYS YGH+E +AR + +GA+ V+G E + +VPET+ ++ K G ++ P+
Sbjct: 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFEKAGGKTQT-APVA 61
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQ 395
TP EL D +FG PTRFG+M+ Q + F D TGGLW + AL GK A F ST + GGGQ
Sbjct: 62 TPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGGQ 120
Query: 396 ETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELEL 572
E T ++ T L HHG++ VPIGY +F++ +V+GG+PYGA T AG DGSRQPS+ EL
Sbjct: 121 EQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEEL 179
Query: 573 AQAFHQGKYFAGIAKKLKG 629
+ A +QG+Y AG+A KL G
Sbjct: 180 SIARYQGEYVAGLAVKLNG 198
>gi|400705|sp|P30821|P25_SCHPO P25 PROTEIN (BREFELDIN A RESISTANCE PROTEIN)
>gi|322896|pir||A45029 brefeldin A resistance protein obr1 -
fission yeast (Schizosaccharomyces pombe)
>gi|287631|dbj|BAA02370.1| (D13038) ORF [Schizosaccharomyces pombe]
>gi|311846|emb|CAA51956.1| (X73558) overexpressed in brefeldin A
resistance [Schizosaccharomyces pombe] >gi|2462689|emb|CAB16744.1|
(Z99568) brefeldin a resistance protein [Schizosaccharomyces pombe]
Length = 202
Frame 3 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00894: 1..29
DOMO DM01333: 31..201
PRODOM PD006822: 4..56
PRODOM PD003171: 67..194
__________________
Plus Strand HSPs:
Score = 490 (172.5 bits), Expect = 8.9e-46, P = 8.9e-46
Identities = 105/199 (52%), Positives = 137/199 (68%), Frame = +3
Query: 30 ATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVP 209
A V IV YSTYGHV KLA E EK G +A ++Q PETL E+L K+ A PK + P
Sbjct: 4 ANTVAIVIYSTYGHVVKLA-EAEKAGIEKAGGKAVIYQFPETLSPEILEKMHAAPKPNYP 62
Query: 210 IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGG 389
++T + LT+ D FLFG+PTR+G+ AQF+ F+D+TGGLW AL GK G F+ST + GG
Sbjct: 63 VVTLDVLTQYDAFLFGYPTRYGTPPAQFRTFWDSTGGLWVQGALHGKYFGQFFSTGTLGG 122
Query: 390 GQETTPLTSITQLVHHGLIFVPIGY--TFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPS 560
GQE+T LT++T VHHG+IFVP+GY TF M +E + GGS +GAG+YAG DGSR S
Sbjct: 123 GQESTALTAMTSFVHHGMIFVPLGYKNTFSL-MANVESIHGGSSWGAGSYAGADGSRNVS 181
Query: 561 ELELAQAFHQGK-YFAGIAKK 620
+ EL A QG+ +F + +K
Sbjct: 182 DDELEIARIQGETFFKTVFRK 202
>gi|6320235 ref|NP_010315.1| Pst2p [Saccharomyces cerevisiae]
>gi|2131379|pir||S61585 hypothetical protein YDR032c - yeast
(Saccharomyces cerevisiae) >gi|1122352|emb|CAA92369.1| (Z68196)
unknown [Saccharomyces cerevisiae] >gi|1431472|emb|CAA98854.1|
(Z74328) ORF YDR032c [Saccharomyces cerevisiae]
Length = 198
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 471 (165.8 bits), Expect = 9.2e-44, P = 9.2e-44
Identities = 102/195 (52%), Positives = 126/195 (64%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPII 215
+V I+ Y+ YGHV A E EK G A ++QV ETL EV+ LG PK D PI
Sbjct: 3 RVAIIIYTLYGHVAATA-EAEKKGIEAAGGSADIYQVEETLSPEVVKALGGAPKPDYPIA 61
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQ 395
T + LTE D FLFG PTRFG+ AQ+KAF+D TGGLW AL GK AG F ST + GGG
Sbjct: 62 TQDTLTEYDAFLFGIPTRFGNFPAQWKAFWDRTGGLWAKGALHGKVAGCFVSTGT-GGGN 120
Query: 396 ETTPLTSITQLVHHGLIFVPIGY-TFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELE 569
E T + S++ L HHG+IFVP+GY + +++V GGSP+GAGT AG DGSR PS LE
Sbjct: 121 EATIMNSLSTLAHHGIIFVPLGYKNVFAELTNMDEVHGGSPWGAGTIAGSDGSRSPSALE 180
Query: 570 LAQAFHQGK-YFAGIAK 617
L QGK ++ +AK
Sbjct: 181 LQVHEIQGKTFYETVAK 197
>gi|1168970|sp|P42059|CLH5_CLAHE MINOR ALLERGEN CLA H 5 (CLA H V)
>gi|1086046|pir||S43116 minor allergen - fungus (Cladosporium
herbarum) >gi|467629|emb|CAA55068.1| (X78224) minor allergen
[Cladosporium herbarum]
Length = 204
Frame 3 hits (HSPs): _________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00894: 1..27
DOMO DM01333: 29..200
PRODOM PD006822: 1..54
PRODOM PD003171: 56..201
__________________
Plus Strand HSPs:
Score = 455 (160.2 bits), Expect = 4.6e-42, P = 4.6e-42
Identities = 98/200 (49%), Positives = 136/200 (68%), Frame = +3
Query: 27 MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSD- 203
MA K+ I++YST+GHV+ LA KG G L++VPETL +EVL K+ APPK D
Sbjct: 1 MAPKIAIIFYSTWGHVQTLAEAEAKGIREAGG-SVDLYRVPETLTQEVLTKMHAPPKDDS 59
Query: 204 VPIIT-PNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSS 380
+P IT P L + D F G PTR+G+ AQ++ F+D TGG W+T A GK AG F ST +
Sbjct: 60 IPEITDPFILEQYDRFPHGHPTRYGNFPAQWRTFWDRTGGQWQTGAFWGKYAGLFISTGT 119
Query: 381 QGGGQETTPLTSITQLVHHGLIFVPIGY-TFGGGMFELEKVKGGSPYGAGTYAG-DGSRQ 554
QGGGQE+T L +++ L HHG+I+VP+GY T + + +V+G + +GAGT++G DGSRQ
Sbjct: 120 QGGGQESTALAAMSTLSHHGIIYVPLGYKTTFHLLGDNSEVRGAAVWGAGTFSGGDGSRQ 179
Query: 555 PSELELAQAFHQGK-YFAGIAK 617
PS+ EL + QGK ++ +AK
Sbjct: 180 PSQKEL-ELTAQGKAFYEAVAK 200
>gi|12514275|gb|AAG55552.1|AE005294_7 (AE005294) trp repressor binding protein;
affects association of trp repressor and operator [Escherichia coli
O157:H7]
Length = 181
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 444 (156.3 bits), Expect = 6.7e-41, P = 6.7e-41
Identities = 89/183 (48%), Positives = 123/183 (67%), Frame = +3
Query: 81 LAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPIITPNELTEADGFLFGF 260
+AR + +GA+ V+G E + +VPET+ ++ K G ++ P+ TP EL D +FG
Sbjct: 1 MARAVAEGASKVDGAEVVVKRVPETMSPQLFEKAGGKTQT-APVATPQELANYDAIIFGT 59
Query: 261 PTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQETTPLTSITQLVHHG 440
PTRFG+M+ Q + F D TGGLW + AL GK A F ST + GGGQE T ++ T L HHG
Sbjct: 60 PTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGGQEQTITSTWTTLAHHG 118
Query: 441 LIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELELAQAFHQGKYFAGIAK 617
++ VPIGY +F++ +V+GG+PYGA T AG DGSRQPS+ EL+ A +QG+Y AG+A
Sbjct: 119 MVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAV 177
Query: 618 KLKG 629
KL G
Sbjct: 178 KLNG 181
>gi|5354201|gb|AAD42410.1|AF157493_18 (AF157493) trp repressor binding protein
[Zymomonas mobilis]
Length = 199
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 424 (149.3 bits), Expect = 8.8e-39, P = 8.8e-39
Identities = 90/196 (45%), Positives = 122/196 (62%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPII 215
K+ ++YYSTYGHVE +A + +GA + G EA + +VPE +PEE K PI
Sbjct: 3 KILVLYYSTYGHVESMAYAVAEGARA--GAEADVKRVPELVPEEAAKKNHFKIDQKAPIA 60
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQ 395
P + + DG + G PTRFG + +Q F+D TGG+W AL GK F ST++Q GGQ
Sbjct: 61 EPKDFLDYDGIIVGAPTRFGRLPSQMANFWDRTGGIWAQGALNGKVGAVFTSTATQHGGQ 120
Query: 396 ETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELEL 572
ETT + ++ L+HHGL+ + Y+F G L++V GG+PYGA T A DGSRQPS+ EL
Sbjct: 121 ETTLYSLMSSLLHHGLVISGLPYSFQG-QGRLDEVTGGAPYGATTIAASDGSRQPSKNEL 179
Query: 573 AQAFHQGKYFAGIAKKL 623
A GK+ A +AKKL
Sbjct: 180 DGAKFLGKHVAELAKKL 196
>gi|12313621|emb|CAC24129.1| (AL512982) ORF-c38_002 [Sulfolobus solfataricus]
Length = 197
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 327 (115.1 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 77/197 (39%), Positives = 113/197 (57%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKS--DVP 209
K+ +++Y YG + LA+ + +GA + E KL +V E P+E++ K P + D+P
Sbjct: 5 KILVLFYG-YGSIVDLAKNVAEGAKEITK-EVKLARVKEYFPQEIVNKFRIPIDTVKDIP 62
Query: 210 IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGG 389
T ++L ADG + G PTR+G+M Q K F D T LW +L GK GFF S+ G
Sbjct: 63 EATLSDLEWADGIVMGSPTRYGNMTGQLKLFLDQTAELWIKGSLYGKPVGFFTEASTMHG 122
Query: 390 GQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEK-VKGGSPYGAGTYAGDGSRQPSEL 566
G E+T L HHG+I VP+GY G+ E+ + GGSPYGA ++ G+ ++ E
Sbjct: 123 GHESTILAMANYAYHHGMIIVPVGY----GIKEVSSTMTGGSPYGA-SHLGN-KKELDEN 176
Query: 567 ELAQAFHQGKYFAGIAKKLK 626
E+ A GK A +AKKL+
Sbjct: 177 EINIAKFLGKRVAEVAKKLR 196
>gi|11278794|pir||A82725 tryptophan repressor binding protein XF1094 [imported]
- Xylella fastidiosa (strain 9a5c)
>gi|9106047|gb|AAF83904.1|AE003945_11 (AE003945) tryptophan
repressor binding protein [Xylella fastidiosa]
Length = 199
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 79/197 (40%), Positives = 107/197 (54%), Frame = +3
Query: 33 TKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAP--PKSDV 206
T + ++YYS G V +LAR+I +G A V G+ A+L VP P + + AP P+
Sbjct: 2 TDILVLYYSHSGSVARLARQIARGIAEVPGMAARLRTVP---PVTAVTQALAPVIPEDGA 58
Query: 207 PIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQG 386
P + P +L E G L G PT FG+MAA K F D+ G W L GK AG F ST S
Sbjct: 59 PYVIPTDLDECAGLLLGSPTHFGNMAAPVKYFLDSLGIDWANGTLVGKPAGVFTSTGSMH 118
Query: 387 GGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVK-GGSPYGAGTYAG-DGSRQPS 560
GGQE T L+ L+HHG + V I +T L + GG+PYGA A + QP+
Sbjct: 119 GGQEATLLSMHLPLLHHGCLIVGIPFTERA----LSHTRSGGTPYGASHVANATNNTQPT 174
Query: 561 ELELAQAFHQGKYFAGIAKKL 623
+ E A G+ A +A++L
Sbjct: 175 DEETLLARALGRRVADLAQRL 195
>gi|11352727|pir||D83526 Trp repressor binding protein WrbA PA0949 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946855|gb|AAG04338.1|AE004529_4 (AE004529) Trp repressor
binding protein WrbA [Pseudomonas aeruginosa]
Length = 198
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 4.6e-26, P = 4.6e-26
Identities = 80/198 (40%), Positives = 105/198 (53%), Frame = +3
Query: 39 VYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAP--PKSDVPI 212
+ ++YYS +G ++AR+I +G G EA++ VP E + AP P
Sbjct: 6 ILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAVSTE---CEAVAPDIPAEGALY 61
Query: 213 ITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGG 392
T +L G G PTRFG+MA+ K F D T LW T +L GK A F ST+S GG
Sbjct: 62 ATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGG 121
Query: 393 QETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAG-DGSRQPSELE 569
QETT L+ + L+HHG++ + I Y+ LE GG+PYGA +AG DG R E E
Sbjct: 122 QETTQLSMLLPLLHHGMLVLGIPYSEPA---LLETRGGGTPYGASHFAGADGKRSLDEHE 178
Query: 570 LAQAFHQGKYFAGIAKKLKGS 632
L GK A A KL GS
Sbjct: 179 LTLCRALGKRLAETAGKL-GS 198
>gi|6319526 ref|NP_009608.1| Homolog to YCR004, obr1 (S. pombe), trp repressor
binding protein (E. coli); Ybr052cp [Saccharomyces cerevisiae]
>gi|586495|sp|P38234|YBQ2_YEAST HYPOTHETICAL 22.9 KD PROTEIN IN
REG2-YRO2 INTERGENIC REGION >gi|626561|pir||S45910 hypothetical
protein YCR004c homolog YBR052c - yeast (Saccharomyces cerevisiae)
>gi|536285|emb|CAA84995.1| (Z35921) ORF YBR052c [Saccharomyces
cerevisiae] >gi|559948|emb|CAA86395.1| (Z46260) putative protein
[Saccharomyces cerevisiae]
Length = 210
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 293 (103.1 bits), Expect = 6.7e-25, P = 6.7e-25
Identities = 81/208 (38%), Positives = 114/208 (54%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPE-TLPEEVLAKLG------APP 194
KV I+ YS + LA E EK + G EA+++QVP+ + E + G A
Sbjct: 3 KVAILIYSVDDIIATLA-ENEKKGIEIAGGEAEIFQVPDVSYKTEYATEEGKEAAKVAKT 61
Query: 195 KSDVP--IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDA-TGGLWRTQALAGKAAGFF 365
+D I+T L E D +LFG PT+FG+ A++K+F+D+ TGGLW +L GK AG F
Sbjct: 62 NADFSYKILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGKIAGLF 121
Query: 366 YSTSSQGGGQ-ETTPLTSITQLVHHGLIFVPIGYTFG-GGMFELEKVKGGSPYGAGTYAG 539
S + G G E + +++ LVHHG+I+VP+GY + ++E V G +GAG +G
Sbjct: 122 VSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLGYKNAYKELTDVEDVNGSCAWGAGCVSG 181
Query: 540 -DGSRQPSELELAQAFHQGKYFAGIAKKL 623
DG R PS EL QGK F K L
Sbjct: 182 IDGGRPPSLSELRVHQLQGKAFYDRIKDL 210
>gi|11278795|pir||G82110 Trp repressor-binding protein VC2166 [imported] -
Vibrio cholerae (group O1 strain N16961) >gi|9656719|gb|AAF95311.1|
(AE004288) Trp repressor-binding protein [Vibrio cholerae]
Length = 186
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 186
0 50 100 150
Plus Strand HSPs:
Score = 289 (101.7 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 76/197 (38%), Positives = 107/197 (54%), Frame = +3
Query: 39 VYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPIIT 218
+ ++YYS +G + LAR+I +G SVEG +A L V E L G SD P ++
Sbjct: 4 IVVLYYSRHGSTQALARQIARGVESVEGCQALLRTVAE-LD-------GTASNSD-PYLS 54
Query: 219 PNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQE 398
+EL + DG G P FG+MAA K F+D T LW + AL K A F S+S+ GGQE
Sbjct: 55 LDELKQCDGLALGSPVWFGNMAAPLKHFWDQTTPLWLSGALIDKPACVFTSSSTLHGGQE 114
Query: 399 TTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQPSELELAQ 578
TT + + L+HHG++ + I Y+ + + GG+PYGA + E ELA+
Sbjct: 115 TTQQSMMLPLLHHGMLILGIPYS-EPALHTTQS--GGTPYGASHVHQQKTLSSEEAELAR 171
Query: 579 AFHQGKYFAGIAKKLKG 629
GK A +AK+LKG
Sbjct: 172 QL--GKRLAHVAKQLKG 186
>gi|10173625|dbj|BAB04729.1| (AP001510) BH1010~unknown conserved protein in
others [Bacillus halodurans]
Length = 202
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 279 (98.2 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 74/198 (37%), Positives = 101/198 (51%), Frame = +3
Query: 33 TKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGA-----PPK 197
TK+ I+YYS+ G +LA+ E+ AA G E K+ +V ET P+ + A
Sbjct: 2 TKLAIIYYSSTGTNYQLAQWAEE-AAKEAGAEVKVLKVAETAPDAAIDSNPAWRAHVDAT 60
Query: 198 SDVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTS 377
DVP +T ++L AD +F PTRFG++ +Q KAF D TGGLW LA K S S
Sbjct: 61 KDVPAVTLDDLVWADAIMFSIPTRFGNVPSQVKAFLDTTGGLWFEGKLANKVVSAMASAS 120
Query: 378 SQGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQP 557
+ GGQE T L+ T + H G I GYT F GG+PYG
Sbjct: 121 NAHGGQEATVLSLYTTMYHWGAIVAAPGYT-APETF----AAGGNPYGTSVTVDQEGNMK 175
Query: 558 SELELAQAFHQGKYFAGIAKKLK 626
+++ A A HQ K +A+ +K
Sbjct: 176 EDVKAAVA-HQAKRTIQVAEWVK 197
>gi|7473722|pir||G75573 probable trp repressor binding protein WrbA -
Deinococcus radiodurans (strain R1)
>gi|6460712|gb|AAF12417.1|AE001863_42 (AE001863) trp repressor
binding protein WrbA, putative [Deinococcus radiodurans]
Length = 200
Frame 3 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 263 (92.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 76/198 (38%), Positives = 102/198 (51%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREI-EKGAASVEGVEAKLWQVPETLPEEVLA-----KLGAPPK 197
K+ IV+YS+ G +A+E E G A+ G E +L +V ET P++V+ K
Sbjct: 6 KLAIVFYSSTGTGYAMAQEAAEAGRAA--GAEVRLLKVRETAPQDVIDGQDAWKANIEAM 63
Query: 198 SDVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTS 377
DVP TP +L A+ +F PTRFG +Q +AF D GGLW + LA K S
Sbjct: 64 KDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 123
Query: 378 SQGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQP 557
+ GGQETT T +H G + P GYT E+ GG+PYGA A +G QP
Sbjct: 124 NVNGGQETTLQTLYMTAMHWGAVLTPPGYTD-----EVIFKSGGNPYGASVTA-NG--QP 175
Query: 558 S-ELELAQAFHQGKYFAGIAKKLKG 629
E + A HQ + + KL G
Sbjct: 176 LLENDRASIRHQVRRQVELTAKLLG 200
>gi|11497955 ref|NP_069179.1| tryptophan repressor binding protein (wrbA)
[Archaeoglobus fulgidus] >gi|7429904|pir||G69292 tryptophan
repressor binding protein (wrbA) homolog - Archaeoglobus fulgidus
>gi|2650293|gb|AAB90893.1| (AE001081) tryptophan repressor binding
protein (wrbA) [Archaeoglobus fulgidus]
Length = 191
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 261 (91.9 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 69/196 (35%), Positives = 101/196 (51%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPK-----S 200
++ ++++S G+ KLA+ + GA G E + +VPET+P E+L K K
Sbjct: 3 RILVIFHSITGNTMKLAKAVADGARE-GGAEVAVKRVPETIPAEILEKNPGYVKVREELE 61
Query: 201 DVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSS 380
+ P EL + D +FG PTRFG M++Q K F D TG LW + L GK F S
Sbjct: 62 SFEVARPEELQDYDAIIFGSPTRFGVMSSQMKQFIDMTGRLWMERRLEGKVGAVFTSNEM 121
Query: 381 QGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQPS 560
GG+E T L+ + L HG+I V + E + GS YGA A G +
Sbjct: 122 PHGGKEATLLSMLLPLFAHGMIIVGLPPA-------KELYRAGSYYGA---ASTGVPKED 171
Query: 561 ELELAQAFHQGKYFAGIAKKL 623
+L++A+ GK A +A+KL
Sbjct: 172 DLQVAKML--GKRVAEVAEKL 190
>gi|3493605|gb|AAC33457.1| (AF067083) Trp repressor binding protein
[Vitreoscilla sp.]
Length = 124
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 124
0 50 100
Plus Strand HSPs:
Score = 244 (85.9 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 58/123 (47%), Positives = 73/123 (59%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPE--TLPEEVLAKLGAPPKSDVP 209
K+ ++YYS G V LARE+ KG SVEG EA L VP+ T+ E V A + P S P
Sbjct: 3 KILVLYYSQNGSVLNLAREMAKGIESVEGCEAVLRTVPKISTVCETVQADI---PSSGAP 59
Query: 210 IITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGG 389
T ++L E G PTRFG+MAA K F D + G+W + L GK A F STS+ G
Sbjct: 60 YATMDDLRECAALALGSPTRFGNMAAAMKYFLDGSSGVWLSGDLIGKPAVVFTSTSTMHG 119
Query: 390 GQETT 404
GQE+T
Sbjct: 120 GQEST 124
>gi|1723996|sp|P54586|YHCB_BACSU HYPOTHETICAL 19.0 KD PROTEIN IN GLPD-CSPB
INTERGENIC REGION >gi|7429905|pir||F69821 flavodoxin homolog yhcB -
Bacillus subtilis >gi|1239977|emb|CAA65685.1| (X96983) hypothetical
protein [Bacillus subtilis] >gi|2633225|emb|CAB12730.1| (Z99108)
similar to flavodoxin [Bacillus subtilis]
Length = 176
Frame 3 hits (HSPs): _________ ______________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
__________________
Annotated Domains:
DOMO DM01333: 1..171
PRODOM PD099350: YHCB_BACSU 1..41
PRODOM PD003171: 43..167
__________________
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 42/137 (30%), Positives = 64/137 (46%), Frame = +3
Query: 225 ELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQETT 404
+L + D ++G P FG++++ K + D G LW L K F +T++ GG E T
Sbjct: 45 KLKDMDAIIWGCPGHFGTISSGLKTWIDRLGYLWAEGELINKVGAVFCTTATTHGGLEMT 104
Query: 405 PLTSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAG-TYAGDGSRQPSE--LELA 575
IT + H G+I V + G + E GS YGAG T D SE ++L
Sbjct: 105 MHNLITPMFHQGMIVVGLP----GNV--PENALYGSYYGAGVTCPVDSDELMSEEGIQLG 158
Query: 576 QAFHQGKYFAGIAKKLKGSQ 635
+A G+ + + L Q
Sbjct: 159 RAL--GRRVSQVTGNLTAGQ 176
Score = 55 (19.4 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 12/31 (38%), Positives = 17/31 (54%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVE 128
K+Y+VY S H + LA I +GA + E
Sbjct: 2 KIYVVYDSEGEHTKVLAEAIAEGARENDAAE 32
>gi|6225339|sp|O67866|FLAV_AQUAE FLAVODOXIN >gi|7445354|pir||F70479 flavodoxin
- Aquifex aeolicus >gi|2984302|gb|AAC07825.1| (AE000772) flavodoxin
[Aquifex aeolicus]
Length = 185
Frame 3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | 185
0 50 100 150
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 36/100 (36%), Positives = 50/100 (50%), Frame = +3
Query: 216 TPNELTEADGFLFGFPTRFGSMAAQFKAFFD-ATGGLWRTQALAGKAAGFFYSTSSQGGG 392
T ++ ADG G PT G ++ + K FFD G LW + GK A F S+ GGG
Sbjct: 43 TKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGE--IDGKIACAFSSSGGWGGG 100
Query: 393 QETTPLTSITQLVHHGLIFVPIGYT-FGGGMFELE--KVKGGSP 515
E ++ +T L++ G F+ G T + G F L V G P
Sbjct: 101 NEVACMSILTMLMNFG--FLVFGVTDYVGKKFTLHYGAVVAGEP 142
Score = 89 (31.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 18/46 (39%), Positives = 29/46 (63%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVL 173
KV ++Y + G+ +K+A + +GA S+EG E +L V E E+VL
Sbjct: 3 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL 48
>gi|11362783|pir||F82645 tryptophan repressor binding protein XF1733 [imported]
- Xylella fastidiosa (strain 9a5c)
>gi|9106801|gb|AAF84542.1|AE003996_11 (AE003996) tryptophan
repressor binding protein [Xylella fastidiosa]
Length = 192
Frame 3 hits (HSPs): _________ ____________________
__________________________________________________
Database sequence: | | | | | 192
0 50 100 150
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 26/76 (34%), Positives = 39/76 (51%), Frame = +3
Query: 228 LTEADGFLFGFPTRFGSMAAQFKAFF-DATGGLWRTQALAGKAAGFFYSTSSQGGGQETT 404
L +D +FG PT GS++A+ K FF D+T W Q K A F ++ +Q G + T
Sbjct: 48 LEASDAIVFGSPTYNGSLSAKLKQFFEDSTKAAWSEQKWRNKIAAGFTNSGAQHGDKLNT 107
Query: 405 PLTSITQLVHHGLIFV 452
+ HG+I+V
Sbjct: 108 LIGMALFAAQHGMIWV 123
Score = 86 (30.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 17/33 (51%), Positives = 22/33 (66%), Frame = +3
Query: 39 VYIVYYSTYGHVEKLAREIEKGAASVEGVEAKL 137
+ IVY S YGH E+ AR + +G A V G +AKL
Sbjct: 3 ISIVYDSGYGHTERQARAVAEGVAKVPGAQAKL 35
>gi|11362782|pir||D82719 tryptophan repressor binding protein XF1133 [imported]
- Xylella fastidiosa (strain 9a5c)
>gi|9106095|gb|AAF83943.1|AE003949_7 (AE003949) tryptophan
repressor binding protein [Xylella fastidiosa]
Length = 189
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 189
0 50 100 150
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 37/140 (26%), Positives = 66/140 (47%), Frame = +3
Query: 228 LTEADGFLFGFPTRFGSMAAQFKAFF-DATGGLWRTQALAGKAAGFFYSTSSQGGGQETT 404
L ++D +FG PT G ++A+ K FF D+T +W Q K A F ++ +Q G + +
Sbjct: 48 LEKSDAIIFGSPTYNGLISAKLKQFFEDSTKQVWVPQKWRNKIAAGFTNSGAQHGDKLNS 107
Query: 405 PLTSITQLVHHGLIFVPIGYTFG-----GGMFELEKVKGGSPYGAGTYAGDGSRQ---PS 560
++ + HG+I+V + G G +L ++ GS G T A + P
Sbjct: 108 LMSMVLFAAQHGMIWVGLDLMPGNNSSTGSPNDLNRL--GSWLGVMTQANNDEAPEIAPP 165
Query: 561 ELELAQAFHQGKYFAGIAKKLK 626
+L A + G+ A ++ +
Sbjct: 166 ASDLKTAQYLGRRVAETVRRFQ 187
Score = 76 (26.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 17/51 (33%), Positives = 28/51 (54%), Frame = +3
Query: 39 VYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPE-EVLAKLGA 188
+ IVY S YGH ++A+ + G ++G + +L V + E E+L K A
Sbjct: 3 ISIVYDSGYGHTAQVAKAVAAGVQEIKGADVRLMAVADGSVEWEILEKSDA 53
>gi|120273|sp|P18855|FLAV_CLOAB FLAVODOXIN >gi|80484|pir||A38177 flavodoxin -
Clostridium acetobutylicum >gi|144814|gb|AAA23238.1| (M36770)
flavodoxin (flox) [Clostridium acetobutylicum]
Length = 160
Frame 3 hits (HSPs): ___________ _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 160
0 50 100 150
__________________
Annotated Domains:
PFAM flavodoxin: Flavodoxins 2..148
PRODOM PD000452: FLAV(24) NCPR(13) FLAW(6) 5..86
PRODOM PD083908: FLAV_CLOAB 88..159
PROSITE FLAVODOXIN: Flavodoxin signature. 5..21
__________________
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 23/82 (28%), Positives = 40/82 (48%), Frame = +3
Query: 228 LTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQETTP 407
L E++G +FG PT + +++ + K + D + L GK F + +S GG +
Sbjct: 46 LQESEGIIFGTPTYYANISWEMKKWIDESSEF----NLEGKLGAAFSTANSIAGGSDIAL 101
Query: 408 LTSITQLVHHGLIFVPIGYTFG 473
LT + L+ G++ G FG
Sbjct: 102 LTILNHLMVKGMLVYSGGVAFG 123
Score = 56 (19.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 12/33 (36%), Positives = 19/33 (57%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAK 134
K+ I+Y S G E++A+ IE+G +E K
Sbjct: 2 KISILYSSKTGKTERVAKLIEEGVKRSGNIEVK 34
>gi|11036548|gb|AAG27178.1|AF270497_3 (AF270497) unknown [Escherichia coli]
Length = 183
Frame 3 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 0.00013, P = 0.00013
Identities = 41/138 (29%), Positives = 60/138 (43%), Frame = +3
Query: 225 ELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQETT 404
+L AD +FG PT G QFK F DA+ W T+ K G F +++S G ++ T
Sbjct: 46 KLDAADAIIFGAPTYMGGAPWQFKKFADASSKAWFTRKWQDKVFGGFTNSASLNGDKQVT 105
Query: 405 PLTSITQLVHHGLIFVPIGYTFGGGMFEL-EKVKG-GSPYG--AGTYAGDGSRQPSELEL 572
+ T HG ++V +G + E V G G + A G+ Q +L
Sbjct: 106 LIYLQTLASQHGGLWVSLGQAPANVLASTREDVNNLGGSVGLLVQSPADAGADQIPTGDL 165
Query: 573 AQAFHQGKYFAGIAKKLK 626
A G+ A I +LK
Sbjct: 166 DTAVKYGERVATITVRLK 183
>gi|2128660|pir||B64435 conserved hypothetical protein MJ1083 - Methanococcus
jannaschii >gi|1499931|gb|AAB99085.1| (U67551) iron-sulfur
flavoprotein (isf) [Methanococcus jannaschii]
Length = 193
Frame 3 hits (HSPs): _______________________________________________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
__________________
Annotated Domains:
PROSITE THIOL_PROTEASE_HIS: Eukaryotic thiol (cy 139..149
__________________
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.00082, P = 0.00082
Identities = 52/187 (27%), Positives = 75/187 (40%), Frame = +3
Query: 66 GHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDVPIITP-----NEL 230
G+ L RE A EG+E + + + + + PII ++
Sbjct: 14 GNTTLLVREALNAIAE-EGIETEFISLADKELNPCIGCNMCKEEGKCPIIDDVDEILKKM 72
Query: 231 TEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQETTPL 410
EADG + G P FG ++AQ K D + L L K G +S+ GGQETT
Sbjct: 73 KEADGIILGSPVYFGGVSAQLKMLMDRSRPLRIGFQLRNKVGGAVAVGASRNGGQETT-- 130
Query: 411 TSITQLVHHGLIFVPIGYTFGGGMFELEKVKGGSPYGAGTYAGDGSRQPSELELAQAFHQ 590
I Q+ H + G + GG+ G G GD LE A+ +
Sbjct: 131 --IQQI--HNFFLIHSMIVVGDN--DPTAHYGGT--GVGKAPGDCKNDDIGLETAR--NL 180
Query: 591 GKYFAGIAKKLK 626
GK A + K +K
Sbjct: 181 GKKVAEVVKLIK 192
>gi|2246438|gb|AAC45465.1| (U50189) Isf [Methanosarcina thermophila]
Length = 191
Frame 3 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.0025, P = 0.0025
Identities = 32/85 (37%), Positives = 41/85 (48%), Frame = +3
Query: 225 ELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQ-ALAGKAAGFFYSTSSQGGGQET 401
++ ADG + P G+ AQ KA FD + L R AL K S+ GGQE
Sbjct: 71 KMRAADGIIVAAPVYMGNYPAQLKALFDRSVLLRRKNFALKNKVGAALSVGGSRNGGQEK 130
Query: 402 TPLTSITQLVH-HGLIFVPIGYTFGG 476
T + SI +H HG+I V FGG
Sbjct: 131 T-IQSIHDWMHIHGMIVVGDNSHFGG 155
>gi|12313622|emb|CAC24130.1| (AL512982) ORF-c51_033 [Sulfolobus solfataricus]
Length = 104
Frame -3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 104
0 20 40 60 80 100
Minus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.011, P = 0.010
Identities = 36/102 (35%), Positives = 43/102 (42%), Frame = -3
Query: 364 KNPAAFPASACVRQRPPVASKNALN*AAIDPNLVGKPNKKPSASVSSLGVIIGTSLFG-- 191
KNP FP + V S+ + N I P LVG P PSA S V G SL
Sbjct: 2 KNPTGFPYNDPFIHNSAVWSRKSFNWPVIFPYLVGDPITIPSAHSRSDNVASGISLTVSI 61
Query: 190 GAPNLARTSSGNVSGTCHSFASTPSTEAAPFSISLASFSTCPY 62
G NL S G S T + S + AP + LA + PY
Sbjct: 62 GILNLLTISCGKYSFTLANLTSFVIS-FAPSATFLAKSTIEPY 103
>gi|7450894|pir||D69046 conserved hypothetical protein MTH135 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621175|gb|AAB84641.1| (AE000802) conserved protein
[Methanothermobacter thermautotrophicus]
Length = 202
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.16, P = 0.15
Identities = 23/55 (41%), Positives = 27/55 (49%), Frame = +3
Query: 237 ADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSSQGGGQET 401
A G + G P FGS+ AQ K F D T L LA + G S+ GGQET
Sbjct: 84 AHGIIIGSPVYFGSVTAQTKMFMDRTRPLRSEFRLANRVGGAVTVGGSRNGGQET 138
>gi|625362|pir||A61338 flavodoxin - Clostridium pasteurianum (fragment)
Length = 51
Frame 3 hits (HSPs): ____________________________________________
Annotated Domains: _________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
__________________
Annotated Domains:
PROSITE FLAVODOXIN: Flavodoxin signature. 5..21
__________________
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.63, P = 0.47
Identities = 17/45 (37%), Positives = 27/45 (60%), Frame = +3
Query: 36 KVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEV 170
KV I+Y+S G+ E +A+ I +GA +G E KL V + ++V
Sbjct: 2 KVNIIYWSGTGNTEAMAKLIAEGAQE-KGAEVKLLNVSDAKEDDV 45
>gi|7594770|dbj|BAA94664.1| (D86934) ORF N057 [Staphylococcus aureus]
Length = 77
Frame -2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.3, P = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Frame = -2
Query: 188 CSQLSKDFFRQCFRYLPQFCFYSLHRS-SPFFYL 90
CS++ + FR Y P CF+ +H S S F Y+
Sbjct: 2 CSKIIRIIFRFNITYEPSICFFVIHDSCSSFTYI 35
>gi|7470445|pir||S74453 hypothetical protein slr1484 - Synechocystis sp.
(strain PCC 6803) >gi|1651677|dbj|BAA16605.1| (D90899) hypothetical
protein [Synechocystis sp.]
Length = 532
Frame -3 hits (HSPs): ____ _________
__________________________________________________
Database sequence: | | | | | 532
0 150 300 450
Minus Strand HSPs:
Score = 72 (25.3 bits), Expect = 6.9, Sum P(2) = 1.0
Identities = 24/85 (28%), Positives = 37/85 (43%), Frame = -3
Query: 343 ASACVRQRPPVASKNALN*AAIDPNLV--GKPNKKPSAS---VSSLGVIIGTSLFGGAPN 179
+S+ Q P+ ++++ A + N V G P KP + ++S G G SL G P
Sbjct: 229 SSSAPSQGNPLTNQDSFT-AIANGNAVSQGAPPMKPGTATKPIASGGGSSGPSLGSGQPR 287
Query: 178 LARTSSGNVSGTCHSFASTPSTEAAP 101
R GN A+ P +AP
Sbjct: 288 AERPGGGNAGANVGPIAANPVASSAP 313
Score = 54 (19.0 bits), Expect = 6.9, Sum P(2) = 1.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Frame = -3
Query: 544 PSPA*VPAPYGEPPFTFSNSNMPPPNVYPMGTKIN 440
PS +P+P E P + NS +PPP P+ ++
Sbjct: 112 PSVNSLPSPVVENPISLPNS-LPPPPAAPVPNAVS 145
>gi|2731768|gb|AAC53543.1| (AF016099) glycine receptor beta-subunit [Mus
musculus]
Length = 81
Frame 1 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 8.1, P = 1.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Frame = +1
Query: 211 LLLPMSLLRLMAFCLVFPQDLDLWPLNLKHFLMQLEAFG 327
+L+ MS RL + L P DL L+P++ + MQLE+FG
Sbjct: 2 VLVSMSF-RL-SITLSCPLDLTLFPMDTQRCKMQLESFG 38
>gi|1150481|emb|CAA91111.1| (Z54312) product similar to WrbA [Lactobacillus
sakei]
Length = 239
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 8.2, P = 1.0
Identities = 22/75 (29%), Positives = 34/75 (45%), Frame = +3
Query: 201 DVPIITPNELTEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQALAGKAAGFFYSTSS 380
D+ +I +E+ +D + G P ++ K F D G T LAGK A F +SS
Sbjct: 63 DIQMIR-DEIASSDVIILGTPVYIRHISGSMKTFLDRLGAWTHTYGLAGKRAIVFAVSSS 121
Query: 381 QGGGQETTPLTSITQ 425
G L+ ++Q
Sbjct: 122 TGEDTACEYLSYVSQ 136
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.319 0.138 0.407
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.362 0.162 0.720
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.349 0.152 0.518
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.359 0.160 0.604
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.342 0.144 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.150 0.522
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 219 218 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 219 218 10. 77 3 12 22 0.10 35
32 0.12 38
+1 0 220 219 10. 77 3 12 22 0.10 35
32 0.12 38
-1 0 220 219 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 219 218 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 219 219 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 42
No. of states in DFA: 599 (59 KB)
Total size of DFA: 254 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 234.39u 1.16s 235.55t Elapsed: 00:00:40
Total cpu time: 234.43u 1.21s 235.64t Elapsed: 00:00:40
Start: Thu Jan 17 02:34:42 2002 End: Thu Jan 17 02:35:22 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000