Kingdom |
Category |
Genus/Species |
Count |
|
  |
  |
20 |
Archaea |
  |
  |
2 |
  |
|
  |
20 |
  |
Euryarchaeota |
  |
2 |
  |
  |
Methanospirillum hungatei (mhu) |
1 |
  |
  |
Uncultured methanogenic archaeon RC-I (rci) |
1 |
Bacteria |
  |
  |
6557 |
  |
Acidobacteria |
  |
1 |
  |
  |
Solibacter usitatus (sus) |
1 |
  |
Actinobacteria |
  |
16 |
  |
  |
Arthrobacter aurescens (aau) |
1 |
  |
  |
Arthrobacter sp. FB24 (art) |
1 |
  |
  |
Corynebacterium efficiens (cef) |
1 |
  |
  |
Frankia sp. CcI3 (fra) |
1 |
  |
  |
Frankia sp. EAN1pec (fre) |
2 |
  |
  |
Mycobacterium smegmatis (msm) |
1 |
  |
  |
Rubrobacter xylanophilus (rxy) |
1 |
  |
  |
Streptomyces coelicolor (sco) |
1 |
  |
  |
Saccharopolyspora erythraea (sen) |
3 |
  |
  |
Salinispora tropica (stp) |
4 |
  |
Bacteroides |
  |
1 |
  |
  |
Bacteroides fragilis YCH46 (bfr) |
1 |
  |
Cyanobacteria |
  |
5 |
  |
  |
Acaryochloris marina (amr) |
2 |
  |
  |
Microcystis aeruginosa (mar) |
2 |
  |
  |
Prochlorococcus marinus MIT 9303 (pmf) |
1 |
  |
Deinococcus-Thermus |
  |
1 |
  |
  |
Thermus thermophilus HB8 (ttj) |
1 |
  |
Firmicutes |
  |
10 |
  |
  |
Bacillus anthracis Sterne (bat) |
1 |
  |
  |
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
1 |
  |
  |
Bacillus thuringiensis Al Hakam (btl) |
1 |
  |
  |
Clostridium thermocellum (cth) |
1 |
  |
  |
Heliobacterium modesticaldum (hmo) |
1 |
  |
  |
Lactobacillus casei ATCC 334 (lca) |
1 |
  |
  |
Lactococcus lactis subsp. lactis IL1403 (lla) |
1 |
  |
  |
Lactobacillus plantarum (lpl) |
1 |
  |
  |
Lysinibacillus sphaericus (lsp) |
1 |
  |
  |
Streptococcus agalactiae NEM316 (serotype III) (san) |
1 |
  |
Green nonsulfur bacteria |
  |
2 |
  |
  |
Chloroflexus aurantiacus (cau) |
1 |
  |
  |
Roseiflexus sp. RS-1 (rrs) |
1 |
  |
Green sulfur bacteria |
  |
3 |
  |
  |
Chlorobium phaeobacteroides BS1 (cpb) |
1 |
  |
  |
Chlorobaculum parvum NCIB 8327 (cpc) |
1 |
  |
  |
Prosthecochloris aestuarii (paa) |
1 |
  |
Proteobacteria |
  |
6516 |
  |
  |
Acidovorax avenae (aav) |
2 |
  |
  |
Acidiphilium cryptum JF-5 (acr) |
1 |
  |
  |
Anaeromyxobacter dehalogenans (ade) |
6 |
  |
  |
Alkalilimnicola ehrlichei (aeh) |
1 |
  |
  |
Acidithiobacillus ferrooxidans (afe) |
1 |
  |
  |
Anaeromyxobacter sp. Fw109-5 (afw) |
1 |
  |
  |
Acidovorax sp. JS42 (ajs) |
2 |
  |
  |
Agrobacterium tumefaciens C58 (Cereon) (atc) |
3 |
  |
  |
Azorhizobium caulinodans (azc) |
2 |
  |
  |
Azoarcus sp. BH72 (azo) |
2 |
  |
  |
Burkholderia cepacia (bam) |
5098 |
  |
  |
Bordetella avium (bav) |
1 |
  |
  |
Bordetella bronchiseptica (bbr) |
5 |
  |
  |
Bradyrhizobium sp. BTAi1 (bbt) |
3 |
  |
  |
Burkholderia cenocepacia HI2424 (bch) |
91 |
  |
  |
Burkholderia cenocepacia J2315 (bcj) |
147 |
  |
  |
Burkholderia cenocepacia MC0-3 (bcm) |
155 |
  |
  |
Burkholderia cenocepacia AU1054 (bcn) |
12 |
  |
  |
Beijerinckia indica (bid) |
4 |
  |
  |
Burkholderia mallei ATCC 23344 (bma) |
4 |
  |
  |
Burkholderia multivorans ATCC 17616 (Tohoku) (bmj) |
81 |
  |
  |
Burkholderia mallei NCTC 10247 (bmn) |
12 |
  |
  |
Burkholderia multivorans ATCC 17616 (JGI) (bmu) |
10 |
  |
  |
Burkholderia mallei SAVP1 (bmv) |
1 |
  |
  |
Burkholderia pseudomallei 668 (bpd) |
20 |
  |
  |
Bordetella pertussis (bpe) |
1 |
  |
  |
Burkholderia phymatum (bph) |
42 |
  |
  |
Burkholderia pseudomallei 1106a (bpl) |
2 |
  |
  |
Burkholderia pseudomallei 1710b (bpm) |
57 |
  |
  |
Burkholderia pseudomallei K96243 (bps) |
8 |
  |
  |
Bordetella petrii (bpt) |
2 |
  |
  |
Burkholderia phytofirmans (bpy) |
37 |
  |
  |
Bradyrhizobium sp. ORS278 (bra) |
2 |
  |
  |
Burkholderia thailandensis (bte) |
41 |
  |
  |
Burkholderia sp. 383 (bur) |
221 |
  |
  |
Burkholderia vietnamiensis (bvi) |
106 |
  |
  |
Burkholderia xenovorans (bxe) |
57 |
  |
  |
Caulobacter crescentus (ccr) |
1 |
  |
  |
Cellvibrio japonicus (cja) |
2 |
  |
  |
Citrobacter koseri ATCC BAA-895 (cko) |
1 |
  |
  |
Chromohalobacter salexigens (csa) |
1 |
  |
  |
Cupriavidus taiwanensis (cti) |
7 |
  |
  |
Delftia acidovorans (dac) |
11 |
  |
  |
Dechloromonas aromatica (dar) |
4 |
  |
  |
Candidatus Desulfococcus oleovorans (dol) |
2 |
  |
  |
Desulfotalea psychrophila (dps) |
1 |
  |
  |
Azoarcus sp. EbN1 (eba) |
3 |
  |
  |
Erwinia carotovora (eca) |
1 |
  |
  |
Escherichia coli CFT073 (UPEC) (ecc) |
2 |
  |
  |
Escherichia coli UTI89 (UPEC) (eci) |
3 |
  |
  |
Escherichia coli SECEC (ecm) |
1 |
  |
  |
Escherichia coli 536 (UPEC) (ecp) |
2 |
  |
  |
Enterobacter sp. 638 (ent) |
1 |
  |
  |
Erwinia tasmaniensis (eta) |
4 |
  |
  |
Francisella philomiragia (fph) |
1 |
  |
  |
Geobacter bemidjiensis (gbm) |
1 |
  |
  |
Geobacter metallireducens (gme) |
1 |
  |
  |
Geobacter sulfurreducens (gsu) |
1 |
  |
  |
Herminiimonas arsenicoxydans (har) |
7 |
  |
  |
Hahella chejuensis (hch) |
7 |
  |
  |
Hyphomonas neptunium (hne) |
1 |
  |
  |
Jannaschia sp. CCS1 (jan) |
1 |
  |
  |
Klebsiella pneumoniae (kpn) |
1 |
  |
  |
Leptothrix cholodnii (lch) |
1 |
  |
  |
Legionella pneumophila Paris (lpp) |
2 |
  |
  |
Marinobacter aquaeolei (maq) |
2 |
  |
  |
Methylococcus capsulatus (mca) |
1 |
  |
  |
Methylobacterium sp. 4-46 (met) |
4 |
  |
  |
Methylobacillus flagellatus (mfa) |
4 |
  |
  |
Mesorhizobium loti (mlo) |
1 |
  |
  |
Minibacterium massiliensis (mms) |
1 |
  |
  |
Marinomonas sp. MWYL1 (mmw) |
1 |
  |
  |
Methylibium petroleiphilum (mpt) |
1 |
  |
  |
Methylobacterium radiotolerans (mrd) |
2 |
  |
  |
Myxococcus xanthus (mxa) |
7 |
  |
  |
Nitrosomonas europaea (neu) |
1 |
  |
  |
Nitratiruptor sp. SB155-2 (nis) |
1 |
  |
  |
Neisseria meningitidis FAM18 (serogroup C) (nmc) |
1 |
  |
  |
Neisseria meningitidis MC58 (serogroup B) (nme) |
1 |
  |
  |
Nitrosospira multiformis (nmu) |
1 |
  |
  |
Ochrobactrum anthropi (oan) |
1 |
  |
  |
Pseudomonas aeruginosa PAO1 (pae) |
1 |
  |
  |
Pseudomonas aeruginosa PA7 (pap) |
3 |
  |
  |
Pseudomonas aeruginosa UCBPP-PA14 (pau) |
1 |
  |
  |
Pelobacter carbinolicus (pca) |
1 |
  |
  |
Pseudomonas entomophila (pen) |
8 |
  |
  |
Pseudomonas fluorescens Pf-5 (pfl) |
7 |
  |
  |
Pseudomonas fluorescens Pf0-1 (pfo) |
2 |
  |
  |
Parvibaculum lavamentivorans (pla) |
1 |
  |
  |
Photorhabdus luminescens (plu) |
1 |
  |
  |
Pseudomonas mendocina (pmy) |
2 |
  |
  |
Polaromonas naphthalenivorans (pna) |
3 |
  |
  |
Polaromonas sp. JS666 (pol) |
2 |
  |
  |
Pelobacter propionicus (ppd) |
1 |
  |
  |
Pseudomonas putida F1 (ppf) |
4 |
  |
  |
Pseudomonas putida GB-1 (ppg) |
6 |
  |
  |
Pseudomonas putida KT2440 (ppu) |
1 |
  |
  |
Pseudomonas putida W619 (ppw) |
2 |
  |
  |
Pseudomonas stutzeri (psa) |
1 |
  |
  |
Pseudomonas syringae pv. syringae B728a (psb) |
1 |
  |
  |
Pseudomonas syringae pv. tomato DC3000 (pst) |
2 |
  |
  |
Rhizobium etli CIAT 652 (rec) |
1 |
  |
  |
Ralstonia eutropha H16 (reh) |
8 |
  |
  |
Rhizobium etli CFN 42 (ret) |
2 |
  |
  |
Ralstonia eutropha JMP134 (reu) |
23 |
  |
  |
Rhodoferax ferrireducens (rfr) |
2 |
  |
  |
Ralstonia metallidurans (rme) |
14 |
  |
  |
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
  |
  |
Rhodopseudomonas palustris HaA2 (rpb) |
1 |
  |
  |
Rhodopseudomonas palustris BisB18 (rpc) |
1 |
  |
  |
Ralstonia pickettii (rpi) |
9 |
  |
  |
Rhodospirillum rubrum (rru) |
2 |
  |
  |
Rhodobacter sphaeroides ATCC 17029 (rsh) |
1 |
  |
  |
Ralstonia solanacearum (rso) |
13 |
  |
  |
Rhodobacter sphaeroides 2.4.1 (rsp) |
1 |
  |
  |
Sphingopyxis alaskensis (sal) |
2 |
  |
  |
Shewanella amazonensis (saz) |
2 |
  |
  |
Sorangium cellulosum (scl) |
3 |
  |
  |
Salmonella enterica subsp. enterica serovar Schwarzengrund (sew) |
1 |
  |
  |
Sodalis glossinidius (sgl) |
3 |
  |
  |
Silicibacter sp. TM1040 (sit) |
1 |
  |
  |
Sinorhizobium medicae (smd) |
1 |
  |
  |
Stenotrophomonas maltophilia (sml) |
1 |
  |
  |
Serratia proteamaculans (spe) |
2 |
  |
  |
Shewanella sediminis (sse) |
1 |
  |
  |
Sphingomonas wittichii (swi) |
1 |
  |
  |
Thiobacillus denitrificans (tbd) |
5 |
  |
  |
Verminephrobacter eiseniae (vei) |
5 |
  |
  |
Vibrio harveyi (vha) |
2 |
  |
  |
Wolinella succinogenes (wsu) |
1 |
  |
  |
Xanthomonas axonopodis (xac) |
3 |
  |
  |
Xanthobacter autotrophicus (xau) |
2 |
  |
  |
Xanthomonas campestris pv. vesicatoria (xcv) |
2 |
  |
  |
Xylella fastidiosa 9a5c (xfa) |
1 |
  |
  |
Xylella fastidiosa M12 (xfm) |
1 |
  |
  |
Yersinia enterocolitica (yen) |
1 |
  |
  |
Yersinia pseudotuberculosis PB1/+ (ypb) |
2 |
  |
  |
Yersinia pseudotuberculosis YPIII (ypy) |
1 |
  |
  |
Zymomonas mobilis (zmo) |
1 |
  |
Verrucomicrobia |
  |
2 |
  |
  |
Opitutus terrae (ote) |
2 |
Eukaryotes |
  |
  |
53 |
  |
Animals |
  |
30 |
  |
  |
Aedes aegypti (yellow fever mosquito) (aag) |
1 |
  |
  |
Caenorhabditis briggsae (cbr) |
2 |
  |
  |
Canis familiaris (dog) (cfa) |
1 |
  |
  |
Drosophila ananassae (dan) |
3 |
  |
  |
Drosophila erecta (der) |
3 |
  |
  |
Drosophila grimshawi (dgr) |
1 |
  |
  |
Drosophila melanogaster (fruit fly) (dme) |
1 |
  |
  |
Drosophila pseudoobscura (dpo) |
2 |
  |
  |
Danio rerio (zebrafish) (dre) |
2 |
  |
  |
Drosophila simulans (dsi) |
2 |
  |
  |
Drosophila willistoni (dwi) |
2 |
  |
  |
Homo sapiens (human) (hsa) |
1 |
  |
  |
Mus musculus (mouse) (mmu) |
4 |
  |
  |
Nematostella vectensis (sea anemone) (nve) |
2 |
  |
  |
Ornithorhynchus anatinus (platypus) (oaa) |
1 |
  |
  |
Rattus norvegicus (rat) (rno) |
2 |
  |
Fungi |
  |
6 |
  |
  |
Aspergillus niger (ang) |
1 |
  |
  |
Aspergillus oryzae (aor) |
3 |
  |
  |
Candida glabrata (cgr) |
1 |
  |
  |
Saccharomyces cerevisiae (sce) |
1 |
  |
Plants |
  |
3 |
  |
  |
Cyanidioschyzon merolae (cme) |
1 |
  |
  |
Chlamydomonas reinhardtii (cre) |
1 |
  |
  |
Oryza sativa japonica (Japanese rice) (osa) |
1 |
  |
Protists |
  |
14 |
  |
  |
Leishmania major (lma) |
7 |
  |
  |
Monosiga brevicollis (mbr) |
1 |
  |
  |
Trypanosoma brucei (tbr) |
1 |
  |
  |
Trypanosoma cruzi (tcr) |
3 |
  |
  |
Trichomonas vaginalis (tva) |
2 |
NULL |
  |
  |
260 |
TOTAL |
  |
  |
6892 |