| Kingdom |
Category |
Genus/Species |
Count |
| Archaea |
|
|
3080 |
| |
Crenarchaeota |
|
20 |
| |
|
Aeropyrum pernix (ape) |
2 |
| |
|
Caldivirga maquilingensis (cma) |
1 |
| |
|
Hyperthermus butylicus (hbu) |
2 |
| |
|
Ignicoccus hospitalis (iho) |
2 |
| |
|
Nitrosopumilus maritimus (nmr) |
3 |
| |
|
Pyrobaculum arsenaticum (pas) |
1 |
| |
|
Sulfolobus acidocaldarius (sai) |
1 |
| |
|
Sulfolobus solfataricus (sso) |
1 |
| |
|
Thermoproteus neutrophilus (tne) |
1 |
| |
|
Thermofilum pendens (tpe) |
6 |
| |
Euryarchaeota |
|
3055 |
| |
|
Archaeoglobus fulgidus (afu) |
2 |
| |
|
Halobacterium sp. NRC-1 (hal) |
11 |
| |
|
Haloarcula marismortui (hma) |
1169 |
| |
|
Halobacterium salinarum R1 (hsl) |
452 |
| |
|
Haloquadratum walsbyi (hwa) |
304 |
| |
|
Methanosarcina acetivorans (mac) |
16 |
| |
|
Methanococcus aeolicus (mae) |
2 |
| |
|
Methanosarcina barkeri (mba) |
10 |
| |
|
Candidatus Methanoregula boonei (mbn) |
3 |
| |
|
Methanococcoides burtonii (mbu) |
4 |
| |
|
Methanoculleus marisnigri (mem) |
17 |
| |
|
Methanococcus jannaschii (mja) |
2 |
| |
|
Methanopyrus kandleri (mka) |
4 |
| |
|
Methanosarcina mazei (mma) |
2 |
| |
|
Methanococcus maripaludis C5 (mmq) |
3 |
| |
|
Methanobrevibacter smithii ATCC 35061 (msi) |
3 |
| |
|
Methanosphaera stadtmanae (mst) |
2 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
3 |
| |
|
Methanosaeta thermophila (mtp) |
5 |
| |
|
Natronomonas pharaonis (nph) |
1008 |
| |
|
Pyrococcus abyssi (pab) |
7 |
| |
|
Pyrococcus furiosus (pfu) |
5 |
| |
|
Pyrococcus horikoshii (pho) |
3 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
13 |
| |
|
Thermococcus kodakaraensis (tko) |
4 |
| |
|
Thermoplasma volcanium (tvo) |
1 |
| |
Korarchaeota |
|
5 |
| |
|
Candidatus Korarchaeum cryptofilum (kcr) |
5 |
| Bacteria |
|
|
499 |
| |
Acidobacteria |
|
9 |
| |
|
Acidobacteria bacterium (aba) |
4 |
| |
|
Solibacter usitatus (sus) |
5 |
| |
Actinobacteria |
|
87 |
| |
|
Arthrobacter aurescens (aau) |
1 |
| |
|
Acidothermus cellulolyticus (ace) |
2 |
| |
|
Arthrobacter sp. FB24 (art) |
3 |
| |
|
Corynebacterium diphtheriae (cdi) |
1 |
| |
|
Corynebacterium glutamicum ATCC 13032 (Bielefeld) (cgb) |
1 |
| |
|
Corynebacterium urealyticum (cur) |
1 |
| |
|
Frankia alni (fal) |
5 |
| |
|
Frankia sp. CcI3 (fra) |
1 |
| |
|
Frankia sp. EAN1pec (fre) |
2 |
| |
|
Kineococcus radiotolerans (kra) |
2 |
| |
|
Mycobacterium abscessus ATCC 19977T (mab) |
1 |
| |
|
Mycobacterium gilvum (mgi) |
4 |
| |
|
Mycobacterium sp. JLS (mjl) |
4 |
| |
|
Mycobacterium marinum M (mmi) |
1 |
| |
|
Mycobacterium smegmatis (msm) |
1 |
| |
|
Mycobacterium ulcerans (mul) |
2 |
| |
|
Mycobacterium vanbaalenii (mva) |
2 |
| |
|
Nocardioides sp. JS614 (nca) |
2 |
| |
|
Nocardia farcinica (nfa) |
2 |
| |
|
Rhodococcus sp. RHA1 (rha) |
4 |
| |
|
Renibacterium salmoninarum (rsa) |
1 |
| |
|
Rubrobacter xylanophilus (rxy) |
19 |
| |
|
Salinispora arenicola (saq) |
2 |
| |
|
Streptomyces coelicolor (sco) |
3 |
| |
|
Saccharopolyspora erythraea (sen) |
9 |
| |
|
Streptomyces griseus (sgr) |
7 |
| |
|
Salinispora tropica (stp) |
1 |
| |
|
Thermobifida fusca (tfu) |
3 |
| |
Bacteroides |
|
17 |
| |
|
Flavobacterium johnsoniae (fjo) |
1 |
| |
|
Gramella forsetii (gfo) |
2 |
| |
|
Parabacteroides distasonis (pdi) |
1 |
| |
|
Salinibacter ruber (sru) |
13 |
| |
Cyanobacteria |
|
20 |
| |
|
Acaryochloris marina (amr) |
1 |
| |
|
Anabaena sp. PCC7120 (ana) |
2 |
| |
|
Anabaena variabilis (ava) |
2 |
| |
|
Cyanobacteria Yellowstone B-Prime (cyb) |
1 |
| |
|
Cyanothece sp. ATCC 51142 (cyt) |
3 |
| |
|
Gloeobacter violaceus (gvi) |
1 |
| |
|
Microcystis aeruginosa (mar) |
1 |
| |
|
Nostoc punctiforme (npu) |
1 |
| |
|
Synechococcus elongatus PCC7942 (syf) |
1 |
| |
|
Synechococcus sp. CC9311 (syg) |
2 |
| |
|
Synechocystis sp. PCC6803 (syn) |
2 |
| |
|
Synechococcus sp. WH7803 (syx) |
2 |
| |
|
Trichodesmium erythraeum (ter) |
1 |
| |
Deinococcus-Thermus |
|
4 |
| |
|
Deinococcus geothermalis (dge) |
1 |
| |
|
Deinococcus radiodurans (dra) |
1 |
| |
|
Thermus thermophilus HB27 (tth) |
1 |
| |
|
Thermus thermophilus HB8 (ttj) |
1 |
| |
Firmicutes |
|
120 |
| |
|
Alkaliphilus metalliredigens (amt) |
13 |
| |
|
Alkaliphilus oremlandii (aoe) |
2 |
| |
|
Bacillus amyloliquefaciens (bay) |
1 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
3 |
| |
|
Bacillus clausii (bcl) |
5 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
1 |
| |
|
Bacillus cereus ZK (bcz) |
2 |
| |
|
Bacillus halodurans (bha) |
11 |
| |
|
Bacillus pumilus (bpu) |
3 |
| |
|
Bacillus subtilis (bsu) |
4 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
2 |
| |
|
Bacillus weihenstephanensis (bwe) |
5 |
| |
|
Clostridium acetobutylicum (cac) |
1 |
| |
|
Clostridium beijerinckii (cbe) |
4 |
| |
|
Clostridium difficile (cdf) |
1 |
| |
|
Clostridium novyi (cno) |
2 |
| |
|
Clostridium thermocellum (cth) |
3 |
| |
|
Candidatus Desulforudis audaxviator (dau) |
3 |
| |
|
Desulfotomaculum reducens (drm) |
1 |
| |
|
Desulfitobacterium hafniense (dsy) |
2 |
| |
|
Geobacillus kaustophilus (gka) |
4 |
| |
|
Geobacillus thermodenitrificans (gtn) |
5 |
| |
|
Heliobacterium modesticaldum (hmo) |
3 |
| |
|
Listeria innocua (lin) |
4 |
| |
|
Lactobacillus johnsonii (ljo) |
1 |
| |
|
Lysinibacillus sphaericus (lsp) |
1 |
| |
|
Mycoplasma penetrans (mpe) |
4 |
| |
|
Moorella thermoacetica (mta) |
2 |
| |
|
Oceanobacillus iheyensis (oih) |
2 |
| |
|
Pelotomaculum thermopropionicum (pth) |
2 |
| |
|
Staphylococcus aureus RF122 (sab) |
1 |
| |
|
Staphylococcus aureus MW2 (sam) |
1 |
| |
|
Staphylococcus aureus NCTC8325 (sao) |
1 |
| |
|
Staphylococcus aureus MRSA252 (sar) |
2 |
| |
|
Staphylococcus aureus Mu3 (saw) |
1 |
| |
|
Staphylococcus epidermidis ATCC 12228 (sep) |
1 |
| |
|
Staphylococcus haemolyticus (sha) |
4 |
| |
|
Streptococcus sanguinis (ssa) |
1 |
| |
|
Streptococcus thermophilus LMD-9 (ste) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
8 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
2 |
| |
Green nonsulfur bacteria |
|
23 |
| |
|
Chloroflexus aurantiacus (cau) |
9 |
| |
|
Herpetosiphon aurantiacus (hau) |
4 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
4 |
| |
|
Roseiflexus sp. RS-1 (rrs) |
6 |
| |
Green sulfur bacteria |
|
4 |
| |
|
Chlorobium phaeobacteroides BS1 (cpb) |
2 |
| |
|
Chlorobium phaeobacteroides (cph) |
1 |
| |
|
Chlorobaculum tepidum (cte) |
1 |
| |
Hyperthermophilic bacteria |
|
6 |
| |
|
Aquifex aeolicus (aae) |
2 |
| |
|
Thermotoga petrophila (tpt) |
2 |
| |
|
Thermotoga sp. RQ2 (trq) |
2 |
| |
Planctomyces |
|
1 |
| |
|
Rhodopirellula baltica (rba) |
1 |
| |
Proteobacteria |
|
200 |
| |
|
Acinetobacter baumannii SDF (abm) |
2 |
| |
|
Acidiphilium cryptum JF-5 (acr) |
2 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
2 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
1 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
1 |
| |
|
Azorhizobium caulinodans (azc) |
3 |
| |
|
Burkholderia ambifaria MC40-6 (bac) |
1 |
| |
|
Bordetella avium (bav) |
1 |
| |
|
Bartonella bacilliformis (bbk) |
1 |
| |
|
Bordetella bronchiseptica (bbr) |
2 |
| |
|
Bradyrhizobium japonicum (bja) |
2 |
| |
|
Burkholderia multivorans (bmu) |
1 |
| |
|
Burkholderia pseudomallei 668 (bpd) |
2 |
| |
|
Bordetella pertussis (bpe) |
2 |
| |
|
Burkholderia pseudomallei 1710b (bpm) |
1 |
| |
|
Bordetella petrii (bpt) |
1 |
| |
|
Bradyrhizobium sp. ORS278 (bra) |
3 |
| |
|
Burkholderia thailandensis (bte) |
1 |
| |
|
Burkholderia sp. 383 (bur) |
2 |
| |
|
Burkholderia xenovorans (bxe) |
4 |
| |
|
Caulobacter crescentus (ccr) |
1 |
| |
|
Campylobacter fetus (cff) |
1 |
| |
|
Citrobacter koseri ATCC BAA-895 (cko) |
1 |
| |
|
Chromohalobacter salexigens (csa) |
1 |
| |
|
Chromobacterium violaceum (cvi) |
1 |
| |
|
Delftia acidovorans (dac) |
1 |
| |
|
Desulfovibrio desulfuricans (dde) |
2 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
5 |
| |
|
Dinoroseobacter shibae (dsh) |
2 |
| |
|
Azoarcus sp. EbN1 (eba) |
3 |
| |
|
Erwinia carotovora (eca) |
1 |
| |
|
Geobacter lovleyi (glo) |
2 |
| |
|
Geobacter metallireducens (gme) |
3 |
| |
|
Geobacter sulfurreducens (gsu) |
12 |
| |
|
Geobacter uraniumreducens (gur) |
1 |
| |
|
Hahella chejuensis (hch) |
2 |
| |
|
Helicobacter pylori J99 (hpj) |
1 |
| |
|
Haemophilus somnus (hso) |
3 |
| |
|
Idiomarina loihiensis (ilo) |
1 |
| |
|
Jannaschia sp. CCS1 (jan) |
1 |
| |
|
Magnetospirillum magneticum (mag) |
2 |
| |
|
Methylococcus capsulatus (mca) |
2 |
| |
|
Mesorhizobium sp. BNC1 (mes) |
2 |
| |
|
Methylobacterium sp. 4-46 (met) |
4 |
| |
|
Methylobacterium extorquens (mex) |
1 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
2 |
| |
|
Mesorhizobium loti (mlo) |
14 |
| |
|
Methylibium petroleiphilum (mpt) |
1 |
| |
|
Methylobacterium radiotolerans (mrd) |
2 |
| |
|
Myxococcus xanthus (mxa) |
5 |
| |
|
Novosphingobium aromaticivorans (nar) |
2 |
| |
|
Nitrobacter hamburgensis (nha) |
1 |
| |
|
Nitrosospira multiformis (nmu) |
2 |
| |
|
Nitrosococcus oceani (noc) |
4 |
| |
|
Ochrobactrum anthropi (oan) |
3 |
| |
|
Psychrobacter arcticum (par) |
1 |
| |
|
Pelobacter carbinolicus (pca) |
1 |
| |
|
Psychrobacter cryohalolentis (pcr) |
1 |
| |
|
Paracoccus denitrificans (pde) |
1 |
| |
|
Pseudomonas entomophila (pen) |
1 |
| |
|
Pseudomonas fluorescens Pf-5 (pfl) |
1 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Parvibaculum lavamentivorans (pla) |
1 |
| |
|
Pseudomonas mendocina (pmy) |
1 |
| |
|
Polaromonas sp. JS666 (pol) |
2 |
| |
|
Pelobacter propionicus (ppd) |
1 |
| |
|
Photobacterium profundum (ppr) |
1 |
| |
|
Pseudomonas putida KT2440 (ppu) |
2 |
| |
|
Pseudomonas stutzeri (psa) |
1 |
| |
|
Pseudomonas syringae pv. tomato DC3000 (pst) |
1 |
| |
|
Roseobacter denitrificans (rde) |
3 |
| |
|
Rhizobium etli CIAT 652 (rec) |
2 |
| |
|
Ralstonia eutropha H16 (reh) |
2 |
| |
|
Rhizobium etli (ret) |
1 |
| |
|
Ralstonia eutropha JMP134 (reu) |
1 |
| |
|
Rhodoferax ferrireducens (rfr) |
1 |
| |
|
Rhizobium leguminosarum (rle) |
2 |
| |
|
Ralstonia metallidurans (rme) |
3 |
| |
|
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
| |
|
Rhodopseudomonas palustris BisB5 (rpd) |
1 |
| |
|
Rhodopseudomonas palustris TIE-1 (rpt) |
1 |
| |
|
Rhodobacter sphaeroides ATCC 17029 (rsh) |
1 |
| |
|
Ralstonia solanacearum (rso) |
1 |
| |
|
Rhodobacter sphaeroides ATCC 17025 (rsq) |
1 |
| |
|
Sphingopyxis alaskensis (sal) |
1 |
| |
|
Shewanella amazonensis (saz) |
1 |
| |
|
Shigella boydii CDC 3083-94 (sbc) |
1 |
| |
|
Sorangium cellulosum (scl) |
9 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
3 |
| |
|
Shewanella halifaxensis (shl) |
1 |
| |
|
Silicibacter pomeroyi (sil) |
2 |
| |
|
Silicibacter sp. TM1040 (sit) |
1 |
| |
|
Shewanella loihica (slo) |
1 |
| |
|
Sinorhizobium meliloti (sme) |
3 |
| |
|
Shewanella oneidensis (son) |
1 |
| |
|
Salmonella typhimurium LT2 (stm) |
1 |
| |
|
Sphingomonas wittichii (swi) |
2 |
| |
|
Verminephrobacter eiseniae (vei) |
1 |
| |
|
Wolbachia pipientis (wpi) |
1 |
| |
|
Xanthobacter autotrophicus (xau) |
2 |
| |
|
Xanthomonas campestris pv. vesicatoria (xcv) |
1 |
| |
|
Xylella fastidiosa 9a5c (xfa) |
1 |
| |
|
Yersinia pseudotuberculosis YPIII (ypy) |
1 |
| |
|
Zymomonas mobilis (zmo) |
1 |
| |
Spirochete |
|
1 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
Synergistetes |
|
7 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
3 |
| |
|
Syntrophomonas wolfei (swo) |
4 |
| Eukaryotes |
|
|
113 |
| |
Animals |
|
40 |
| |
|
Bos taurus (cow) (bta) |
1 |
| |
|
Canis familiaris (dog) (cfa) |
1 |
| |
|
Drosophila melanogaster (fruit fly) (dme) |
2 |
| |
|
Drosophila pseudoobscura (dpo) |
2 |
| |
|
Danio rerio (zebrafish) (dre) |
8 |
| |
|
Homo sapiens (human) (hsa) |
2 |
| |
|
Macaca mulatta (rhesus monkey) (mcc) |
3 |
| |
|
Monodelphis domestica (opossum) (mdo) |
3 |
| |
|
Mus musculus (mouse) (mmu) |
5 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
3 |
| |
|
Ornithorhynchus anatinus (platypus) (oaa) |
1 |
| |
|
Pan troglodytes (chimpanzee) (ptr) |
1 |
| |
|
Rattus norvegicus (rat) (rno) |
8 |
| |
Fungi |
|
26 |
| |
|
Aspergillus fumigatus (afm) |
3 |
| |
|
Aspergillus niger (ang) |
1 |
| |
|
Candida albicans (cal) |
2 |
| |
|
Cryptococcus neoformans JEC21 (cne) |
1 |
| |
|
Fusarium graminearum (fgr) |
2 |
| |
|
Kluyveromyces lactis (kla) |
1 |
| |
|
Magnaporthe grisea (mgr) |
3 |
| |
|
Neurospora crassa (ncr) |
2 |
| |
|
Podospora anserina (pan) |
2 |
| |
|
Pichia stipitis (pic) |
3 |
| |
|
Ustilago maydis (uma) |
1 |
| |
|
Vanderwaltozyma polyspora (vpo) |
3 |
| |
|
Yarrowia lipolytica (yli) |
2 |
| |
Plants |
|
3 |
| |
|
Arabidopsis thaliana (thale cress) (ath) |
1 |
| |
|
Chlamydomonas reinhardtii (cre) |
1 |
| |
|
Physcomitrella patens subsp. patens (ppp) |
1 |
| |
Protists |
|
44 |
| |
|
Cryptosporidium parvum (cpv) |
3 |
| |
|
Dictyostelium discoideum (ddi) |
3 |
| |
|
Entamoeba histolytica (ehi) |
6 |
| |
|
Leishmania major (lma) |
4 |
| |
|
Monosiga brevicollis (mbr) |
9 |
| |
|
Plasmodium falciparum (pfa) |
3 |
| |
|
Plasmodium falciparum Dd2 (pfd) |
5 |
| |
|
Plasmodium falciparum HB3 (pfh) |
4 |
| |
|
Plasmodium yoelii (pyo) |
1 |
| |
|
Trichomonas vaginalis (tva) |
6 |
| NULL |
|
|
583 |
| TOTAL |
|
|
4275 |
![[space]](http://compbio.ornl.gov/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}