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Library:881 (dbEST ID)
NCI_CGAP_Alv1
Library Description
| Organism: | Homo sapiens |
| Tissue: | alveolar rhabdomyosarcoma |
| Vector: | pAMP10 |
| Vector type: | plasmid (ampicillin resistant) |
| Lab host: | DH10B |
mRNA made from alveolar rhabdomyosarcoma, cDNA made by oligo-dT priming. Non-directionally cloned. Size-selected on agarose gel, average insert size 600 bp. Reference: Krizman et al. (1996) Cancer Research 56:5380-5383.
Source: Robert Strausberg, Ph.D.
Gene Content Analysis
3,602 ESTs from this library were grouped into 1,793 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 1 | 278 |  |
Hs.664453 | Transcribed locus. |
| 1 | 278 | |
Hs.664449 | Transcribed locus. |
| 1 | 278 | |
Hs.664448 | Transcribed locus. |
| 1 | 278 | |
Hs.664446 | Transcribed locus. |
| 1 | 278 | |
Hs.664445 | Transcribed locus. |
| 1 | 278 | |
Hs.664444 | Transcribed locus. |
| 1 | 278 | |
Hs.664441 | Transcribed locus. |
| 1 | 278 | |
Hs.664440 | Transcribed locus. |
| 1 | 278 | |
Hs.664437 | Transcribed locus. |
| 1 | 278 | |
Hs.664426 | Transcribed locus. |
| 1 | 278 | |
Hs.664425 | Transcribed locus. |
| 1 | 278 | |
Hs.664369 | Transcribed locus. |
| 1 | 278 | |
Hs.664352 | Transcribed locus. |
| 1 | 278 | |
Hs.664347 | Transcribed locus. |
| 1 | 278 | |
Hs.664231 | Transcribed locus. |
| 1 | 278 | |
Hs.664230 | Transcribed locus. |
| 1 | 278 | |
Hs.664226 | Transcribed locus. |
| 1 | 278 | |
Hs.663606 | Transcribed locus. |
| 1 | 278 | |
Hs.663456 | Transcribed locus. |
| 1 | 278 | |
Hs.663455 | Transcribed locus. |
| 1 | 278 | |
Hs.663454 | Transcribed locus. |
| 1 | 278 | |
Hs.663435 | Transcribed locus, strongly similar to NP_001008310.1 basic transcription factor 3 [Rattus norvegicus]. |
| 1 | 278 | |
Hs.663378 | Transcribed locus. |
| 1 | 278 | |
Hs.663077 | Transcribed locus. |
| 1 | 278 | |
Hs.663040 | Transcribed locus. |
| 1 | 278 | |
Hs.663039 | Clone A9A2BR13 (CAC)n/(GTG)n repeat-containing mRNA. |
| 1 | 278 | |
Hs.662880 | Transcribed locus. |
| 1 | 278 | |
Hs.662876 | Transcribed locus, strongly similar to NP_001002.1 ribosomal protein S7 [Homo sapiens]. |
| 1 | 278 | |
Hs.662875 | Transcribed locus. |
| 1 | 278 | |
Hs.662874 | Transcribed locus. |
| 1 | 278 | |
Hs.662873 | Transcribed locus. |
| 1 | 278 | |
Hs.662872 | Transcribed locus. |
| 1 | 278 | |
Hs.662871 | Transcribed locus. |
| 1 | 278 | |
Hs.662870 | Transcribed locus. |
| 1 | 278 | |
Hs.662868 | Transcribed locus. |
| 1 | 278 | |
Hs.662866 | Transcribed locus. |
| 1 | 278 | |
Hs.662815 | Transcribed locus. |
| 1 | 278 | |
Hs.662688 | Transcribed locus. |
| 1 | 278 | |
Hs.662098 | Transcribed locus. |
| 1 | 278 | |
Hs.662033 | Primary neuroblastoma cDNA, clone:Nbla10485, full insert sequence. |
| 1 | 278 | |
Hs.662005 | Transcribed locus. |
| 1 | 278 | |
Hs.661894 | Similar to S19 ribosomal protein. |
| 1 | 278 | |
Hs.661733 | Transcribed locus. |
| 1 | 278 | |
Hs.661679 | Chromosome 22 open reading frame 39. |
| 1 | 278 | |
Hs.661545 | Transcribed locus. |
| 1 | 278 | |
Hs.660925 | Transcribed locus. |
| 1 | 278 | |
Hs.660922 | Pseudouridylate synthase 3. |
| 1 | 278 | |
Hs.660757 | Protein kinase D3. |
| 1 | 278 | |
Hs.660185 | CDNA FLJ10237 fis, clone HEMBB1000438. |
| 1 | 278 | |
Hs.660109 | Ribosomal RNA processing 15 homolog (S. cerevisiae). |
| 1 | 278 | |
Hs.659959 | Transcribed locus. |
| 1 | 278 | |
Hs.659658 | Transcribed locus, moderately similar to XP_001091208.1 PREDICTED: hypothetical protein [Macaca mulatta]. |
| 1 | 278 | |
Hs.659360 | Hypothetical LOC100129387. |
| 1 | 278 | |
Hs.659342 | CDNA FLJ44365 fis, clone TRACH3008535. |
| 1 | 278 | |
Hs.659194 | Transcribed locus. |
| 1 | 278 | |
Hs.658931 | Transcribed locus. |
| 1 | 278 | |
Hs.658911 | Transcribed locus, strongly similar to NP_659434.2 folliculin isoform 1 [Homo sapiens]. |
| 1 | 278 | |
Hs.658216 | Transcribed locus. |
| 1 | 278 | |
Hs.658215 | Aquaporin 7 pseudogene 1. |
| 1 | 278 | |
Hs.658160 | Transcribed locus. |
| 1 | 278 | |
Hs.658155 | Transcribed locus, strongly similar to NP_002887.2 RNA binding motif protein 4 [Homo sapiens]. |
| 1 | 278 | |
Hs.657767 | CDNA FLJ11750 fis, clone HEMBA1005568. |
| 1 | 278 | |
Hs.657660 | Transcribed locus. |
| 1 | 278 | |
Hs.657367 | Junctophilin 1. |
| 1 | 278 | |
Hs.657172 | NEL-like 1 (chicken). |
| 1 | 278 | |
Hs.657055 | Transcribed locus. |
| 1 | 278 | |
Hs.656687 | Calcium channel, voltage-dependent, alpha 2/delta subunit 3. |
| 1 | 278 | |
Hs.656660 | Hypothetical LOC654433. |
| 1 | 278 | |
Hs.656646 | General transcription factor IIIC, polypeptide 4, 90kDa. |
| 1 | 278 | |
Hs.656607 | Transcribed locus, strongly similar to NP_060542.4 protein BAP28 [Homo sapiens]. |
| 1 | 278 | |
Hs.656581 | Basonuclin 2. |
| 1 | 278 | |
Hs.656565 | Phosphatidylinositol glycan anchor biosynthesis, class P. |
| 1 | 278 | |
Hs.656521 | Transcribed locus. |
| 1 | 278 | |
Hs.656492 | Ankyrin repeat and sterile alpha motif domain containing 1A. |
| 1 | 278 | |
Hs.656343 | CDNA FLJ14832 fis, clone OVARC1001169. |
| 1 | 278 | |
Hs.656073 | Acetoacetyl-CoA synthetase. |
| 1 | 278 | |
Hs.655895 | RCC1 domain containing 1. |
| 1 | 278 | |
Hs.655782 | Eukaryotic translation initiation factor 2A, 65kDa. |
| 1 | 278 | |
Hs.655763 | CDNA: FLJ21635 fis, clone COL08233, highly similar to AF131819 Homo sapiens clone 24838 mRNA sequence. |
| 1 | 278 | |
Hs.655757 | Primary neuroblastoma cDNA, clone:Nbla04246, full insert sequence. |
| 1 | 278 | |
Hs.655750 | Mitogen-activated protein kinase kinase kinase kinase 3. |
| 1 | 278 | |
Hs.655661 | Protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform. |
| 1 | 278 | |
Hs.655552 | ArfGAP with SH3 domain, ankyrin repeat and PH domain 1. |
| 1 | 278 | |
Hs.655522 | Transcribed locus. |
| 1 | 278 | |
Hs.655463 | Hypothetical protein FLJ23556. |
| 1 | 278 | |
Hs.655455 | Poliovirus receptor-related 2 (herpesvirus entry mediator B). |
| 1 | 278 | |
Hs.655449 | Oxidoreductase NAD-binding domain containing 1. |
| 1 | 278 | |
Hs.655331 | TEA domain family member 1 (SV40 transcriptional enhancer factor). |
| 1 | 278 | |
Hs.655327 | Prefoldin subunit 5. |
| 1 | 278 | |
Hs.655297 | Neuroblastoma cDNA, clone:Nbla00136, full insert sequence. |
| 1 | 278 | |
Hs.655286 | Zinc finger and BTB domain containing 11. |
| 1 | 278 | |
Hs.655104 | Transcribed locus. |
| 1 | 278 | |
Hs.655088 | SAP30 binding protein. |
| 1 | 278 | |
Hs.655057 | Trinucleotide repeat containing 6A. |
| 1 | 278 | |
Hs.654957 | Pyrophosphatase (inorganic) 2. |
| 1 | 278 | |
Hs.654907 | Arginyl-tRNA synthetase. |
| 1 | 278 | |
Hs.654849 | RAB3 GTPase activating protein subunit 2 (non-catalytic). |
| 1 | 278 | |
Hs.654802 | Erythrocyte membrane protein band 4.1 like 5. |
| 1 | 278 | |
Hs.654790 | Solute carrier family 24 (sodium/potassium/calcium exchanger), member 3. |
| 1 | 278 | |
Hs.654773 | Golgi autoantigen, golgin subfamily a, 7. |
Source: NCBI UniGene
EST Sequences
4,907 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2009.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- muscle
- soft tissue/muscle tissue tumor
- unknown developmental stage
- non-normalized
Source: NCBI Clone Registry