BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_0909 DNA topoisomerase IV subunit B
(650 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_269104.1| DNA topoisomerase IV subunit B [Streptococ... 1329 0.0
ref|YP_602297.1| DNA topoisomerase IV subunit B [Streptococ... 1328 0.0
ref|YP_282074.1| DNA topoisomerase IV subunit B [Streptococ... 1327 0.0
ref|YP_280159.1| DNA topoisomerase IV subunit B [Streptococ... 1327 0.0
ref|NP_607109.1| DNA topoisomerase IV subunit B [Streptococ... 1327 0.0
ref|YP_060046.1| DNA topoisomerase IV subunit B [Streptococ... 1326 0.0
ref|NP_664428.1| DNA topoisomerase IV subunit B [Streptococ... 1326 0.0
ref|YP_596499.1| DNA topoisomerase IV subunit B [Streptococ... 1325 0.0
ref|YP_001128647.1| DNA topoisomerase IV subunit B [Strepto... 1324 0.0
ref|NP_802491.1| DNA topoisomerase IV subunit B [Streptococ... 1323 0.0
ref|YP_598378.1| DNA topoisomerase IV subunit B [Streptococ... 1320 0.0
ref|NP_688163.1| DNA topoisomerase IV subunit B [Streptococ... 1177 0.0
ref|ZP_02920270.1| hypothetical protein STRINF_01147 [Strep... 1174 0.0
ref|NP_735673.1| DNA topoisomerase IV subunit B [Streptococ... 1174 0.0
ref|YP_139109.1| DNA topoisomerase IV subunit B [Streptococ... 1172 0.0
ref|YP_820096.1| DNA topoisomerase IV subunit B [Streptococ... 1170 0.0
ref|ZP_00783003.1| DNA topoisomerase IV, B subunit [Strepto... 1169 0.0
ref|YP_140999.1| DNA topoisomerase IV subunit B [Streptococ... 1167 0.0
ref|ZP_00785709.1| DNA topoisomerase IV, B subunit [Strepto... 1167 0.0
ref|YP_329857.1| DNA topoisomerase IV subunit B [Streptococ... 1166 0.0
gb|AAZ93048.1| topoisomerase IV subunit B [Streptococcus pn... 1158 0.0
gb|AAZ93093.1| topoisomerase IV subunit B [Streptococcus pn... 1158 0.0
ref|ZP_01831889.1| DNA topoisomerase IV subunit B [Streptoc... 1158 0.0
gb|AAZ93050.1| topoisomerase IV subunit B [Streptococcus pn... 1157 0.0
ref|ZP_02709661.1| DNA topoisomerase IV, B subunit [Strepto... 1157 0.0
ref|ZP_01817850.1| DNA topoisomerase IV subunit B [Streptoc... 1157 0.0
gb|AAZ93057.1| topoisomerase IV subunit B [Streptococcus pn... 1157 0.0
gb|AAZ93047.1| topoisomerase IV subunit B [Streptococcus pn... 1157 0.0
gb|AAZ93102.1| topoisomerase IV subunit B [Streptococcus pn... 1157 0.0
ref|NP_345341.1| DNA topoisomerase IV subunit B [Streptococ... 1156 0.0
ref|ZP_02710308.1| DNA topoisomerase IV, B subunit [Strepto... 1156 0.0
gb|AAZ93054.1| topoisomerase IV subunit B [Streptococcus pn... 1156 0.0
gb|AAZ93052.1| topoisomerase IV subunit B [Streptococcus pn... 1155 0.0
ref|NP_358350.1| DNA topoisomerase IV subunit B [Streptococ... 1155 0.0
ref|ZP_01819718.1| DNA topoisomerase IV, B subunit [Strepto... 1154 0.0
gb|AAZ93076.1| topoisomerase IV subunit B [Streptococcus pn... 1152 0.0
gb|AAO16800.1| ParE [Streptococcus mitis] 1152 0.0
gb|AAZ93081.1| topoisomerase IV subunit B [Streptococcus pn... 1152 0.0
gb|AAO16799.1| ParE [Streptococcus oralis] 1151 0.0
ref|YP_001450529.1| DNA topoisomerase IV, B subunit [Strept... 1151 0.0
gb|AAZ93075.1| topoisomerase IV subunit B [Streptococcus pn... 1150 0.0
ref|ZP_00874947.1| Gram positive topoisomerase IV, subunit ... 1150 0.0
gb|AAZ93077.1| topoisomerase IV subunit B [Streptococcus pn... 1148 0.0
ref|YP_001035185.1| DNA topoisomerase IV subunit B [Strepto... 1144 0.0
gb|AAO16798.1| ParE [Streptococcus pneumoniae] 1140 0.0
gb|AAO16803.1| ParE [Streptococcus pneumoniae] 1138 0.0
ref|NP_721590.1| DNA topoisomerase IV subunit B [Streptococ... 1128 0.0
dbj|BAB62879.1| DNA topoisomerase IV subunit B [Streptococc... 1125 0.0
ref|YP_001032825.1| DNA topoisomerase IV subunit B [Lactoco... 1125 0.0
ref|NP_267135.1| DNA topoisomerase IV subunit B [Lactococcu... 1124 0.0
ref|YP_809024.1| DNA topoisomerase IV subunit B [Lactococcu... 1124 0.0
ref|ZP_00365753.1| COG0187: Type IIA topoisomerase (DNA gyr... 1068 0.0
ref|NP_815328.1| DNA topoisomerase IV subunit B [Enterococc... 1004 0.0
emb|CAA65022.1| DNA topoisomerase IV E subunit [Streptococc... 987 0.0
ref|ZP_00605191.1| Gram positive topoisomerase IV, subunit ... 979 0.0
ref|YP_535764.1| DNA topoisomerase IV subunit B [Lactobacil... 959 0.0
ref|YP_395587.1| DNA topoisomerase IV subunit B [Lactobacil... 956 0.0
gb|AAZ93094.1| topoisomerase IV subunit B [Streptococcus pn... 951 0.0
ref|NP_979914.1| DNA topoisomerase IV subunit B [Bacillus c... 940 0.0
ref|ZP_02595925.1| DNA topoisomerase IV subunit B [Bacillus... 939 0.0
ref|YP_037677.1| DNA topoisomerase IV subunit B [Bacillus t... 939 0.0
ref|YP_895992.1| DNA topoisomerase IV subunit B [Bacillus t... 939 0.0
ref|NP_845922.1| DNA topoisomerase IV subunit B [Bacillus a... 938 0.0
ref|ZP_00240926.1| DNA topoisomerase IV, B subunit [Bacillu... 936 0.0
ref|YP_001646088.1| DNA topoisomerase IV, B subunit [Bacill... 936 0.0
ref|NP_243006.1| DNA topoisomerase IV subunit B [Bacillus h... 936 0.0
ref|ZP_02914154.1| DNA topoisomerase IV, B subunit [Geobaci... 935 0.0
ref|YP_001375491.1| DNA topoisomerase IV, B subunit [Bacill... 934 0.0
ref|YP_079225.1| subunit of DNA topoisomerase IV [Bacillus ... 930 0.0
ref|NP_833329.1| DNA topoisomerase IV subunit B [Bacillus c... 930 0.0
ref|ZP_02525290.1| DNA topoisomerase IV subunit B [Bacillus... 929 0.0
ref|ZP_02578635.1| DNA topoisomerase IV subunit B [Bacillus... 928 0.0
ref|ZP_01174064.1| DNA topoisomerase IV subunit B [Bacillus... 927 0.0
ref|ZP_02585488.1| DNA topoisomerase IV subunit B [Bacillus... 927 0.0
ref|YP_804457.1| DNA topoisomerase IV subunit B [Pediococcu... 925 0.0
ref|NP_389691.2| DNA topoisomerase IV subunit B [Bacillus s... 919 0.0
ref|YP_147604.1| DNA topoisomerase IV subunit B [Geobacillu... 919 0.0
ref|NP_470661.1| DNA topoisomerase IV subunit B [Listeria i... 918 0.0
ref|YP_849500.1| DNA topoisomerase IV subunit B [Listeria w... 917 0.0
ref|NP_692614.1| DNA topoisomerase IV subunit B [Oceanobaci... 915 0.0
ref|NP_464811.1| DNA topoisomerase IV subunit B [Listeria m... 915 0.0
ref|YP_001698670.1| DNA topoisomerase 4 subunit B [Lysiniba... 915 0.0
ref|YP_013902.1| DNA topoisomerase IV subunit B [Listeria m... 914 0.0
ref|ZP_01724598.1| DNA topoisomerase IV subunit B [Bacillus... 913 0.0
ref|ZP_02170423.1| DNA polymerase III, epsilon subunit [Bac... 912 0.0
ref|NP_785393.1| DNA topoisomerase IV subunit B [Lactobacil... 912 0.0
ref|YP_001421384.1| ParE [Bacillus amyloliquefaciens FZB42]... 905 0.0
ref|NP_965026.1| DNA topoisomerase IV subunit B [Lactobacil... 903 0.0
ref|YP_001486947.1| DNA topoisomerase (ATP-hydrolyzing) Par... 903 0.0
ref|YP_814813.1| DNA topoisomerase IV subunit B [Lactobacil... 902 0.0
ref|YP_175485.1| DNA topoisomerase IV subunit B [Bacillus c... 901 0.0
ref|YP_794978.1| DNA topoisomerase IV subunit B [Lactobacil... 898 0.0
ref|NP_764591.1| DNA topoisomerase IV subunit B [Staphyloco... 898 0.0
sp|Q8CSN9|PARE_STAES DNA topoisomerase 4 subunit B (Topoiso... 897 0.0
ref|NP_371878.1| DNA topoisomerase IV subunit B [Staphyloco... 896 0.0
ref|YP_001316580.1| DNA topoisomerase IV subunit B [Staphyl... 895 0.0
ref|NP_646058.1| DNA topoisomerase IV subunit B [Staphyloco... 895 0.0
ref|YP_499879.1| DNA topoisomerase IV subunit B [Staphyloco... 894 0.0
gb|AAQ19685.1| topoisomerase IV subunit B [Staphylococcus h... 892 0.0
ref|YP_043418.1| DNA topoisomerase IV subunit B [Staphyloco... 892 0.0
sp|Q6GH51|PARE_STAAR DNA topoisomerase 4 subunit B (Topoiso... 892 0.0
sp|Q6G9K5|PARE_STAAS DNA topoisomerase 4 subunit B (Topoiso... 891 0.0
ref|YP_253469.1| DNA topoisomerase IV subunit B [Staphyloco... 891 0.0
ref|YP_040771.1| DNA topoisomerase IV subunit B [Staphyloco... 891 0.0
ref|YP_416688.1| DNA topoisomerase IV subunit B [Staphyloco... 889 0.0
ref|YP_301494.1| DNA topoisomerase IV subunit B [Staphyloco... 888 0.0
ref|YP_806628.1| DNA topoisomerase IV subunit B [Lactobacil... 886 0.0
ref|YP_001125756.1| DNA topoisomerase IV subunit B [Geobaci... 885 0.0
emb|CAA97606.1| GrlB [Bacillus subtilis] 880 0.0
ref|YP_193997.1| DNA topoisomerase IV subunit B [Lactobacil... 876 0.0
ref|YP_001577546.1| DNA topoisomerase IV subunit B [Lactoba... 872 0.0
ref|YP_001271383.1| DNA topoisomerase IV subunit B [Lactoba... 872 0.0
ref|YP_001841748.1| topoisomerase IV B subunit [Lactobacill... 871 0.0
ref|ZP_02867405.1| hypothetical protein CLOSPI_01235 [Clost... 867 0.0
emb|CAK18887.1| topoisomerase IV subunit B [Staphylococcus ... 864 0.0
ref|YP_618973.1| DNA topoisomerase IV subunit B [Lactobacil... 864 0.0
ref|YP_001814062.1| DNA topoisomerase IV, B subunit [Exiguo... 863 0.0
ref|YP_810600.1| DNA topoisomerase IV subunit B [Oenococcus... 858 0.0
ref|ZP_01544326.1| DNA topoisomerase IV, B subunit [Oenococ... 855 0.0
ref|ZP_02991130.1| DNA topoisomerase IV, B subunit [Exiguob... 847 0.0
ref|ZP_02184808.1| DNA topoisomerase IV subunit B [Carnobac... 846 0.0
ref|YP_001728378.1| DNA topoisomerase IV, B subunit [Leucon... 842 0.0
emb|CAK18891.1| topoisomerase IV subunit B [Staphylococcus ... 840 0.0
emb|CAK18889.1| topoisomerase IV subunit B [Staphylococcus ... 839 0.0
ref|YP_001200319.1| Type IIA topoisomerase (DNA gyrase/topo... 835 0.0
ref|YP_818830.1| DNA topoisomerase IV subunit B [Leuconosto... 833 0.0
ref|YP_001843719.1| topoisomerase IV subunit B [Lactobacill... 825 0.0
ref|ZP_02077211.1| hypothetical protein EUBDOL_01005 [Eubac... 805 0.0
ref|ZP_01275026.1| Gram positive topoisomerase IV, subunit ... 784 0.0
emb|CAK99042.1| dna topoisomerase iv subunit b protein [Spi... 763 0.0
ref|YP_001620377.1| DNA topoisomerase IV, subunit B [Achole... 760 0.0
ref|ZP_02851177.1| DNA topoisomerase IV, B subunit [Paeniba... 752 0.0
ref|YP_001256324.1| Topoisomerase IV subunit B [Mycoplasma ... 738 0.0
ref|ZP_02328278.1| DNA topoisomerase IV subunit B [Paenibac... 734 0.0
ref|ZP_01697833.1| DNA topoisomerase, type IIA, subunit B, ... 734 0.0
ref|NP_326203.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pul... 728 0.0
ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma... 720 0.0
ref|YP_001198124.1| Type IIA topoisomerase (DNA gyrase/topo... 704 0.0
ref|NP_758034.1| DNA topoisomerase IV subunit B [Mycoplasma... 702 0.0
ref|ZP_02852009.1| DNA gyrase, B subunit [Natranaerobius th... 699 0.0
gb|ABW84388.1| DNA topoisomerase IV subunit B [Spiroplasma ... 696 0.0
ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureapla... 696 0.0
ref|YP_016083.1| topoisomerase IB subunit B [Mycoplasma mob... 695 0.0
ref|ZP_02964846.1| DNA topoisomerase IV, B subunit [Ureapla... 694 0.0
ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureapla... 694 0.0
ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureapla... 693 0.0
ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma... 692 0.0
ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureapla... 692 0.0
ref|NP_975496.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma... 687 0.0
ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasm... 687 0.0
ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobut... 684 0.0
gb|AAB41130.1| DNA gyrase subunit B 683 0.0
gb|AAC33841.2| topoisomerase IV subunit [Mycoplasma hominis] 682 0.0
ref|ZP_01828867.1| DNA topoisomerase IV subunit B [Streptoc... 680 0.0
ref|YP_752735.1| DNA topoisomerase (ATP-hydrolyzing) [Syntr... 676 0.0
ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans ... 676 0.0
gb|ABW84389.1| DNA topoisomerase IV subunit B [Spiroplasma ... 674 0.0
ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiru... 671 0.0
ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis su... 670 0.0
ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniform... 669 0.0
ref|YP_077288.1| DNA gyrase (subunit B) [Bacillus lichenifo... 669 0.0
ref|YP_001419685.1| GyrB [Bacillus amyloliquefaciens FZB42]... 668 0.0
ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium h... 667 0.0
ref|YP_001485266.1| DNA topoisomerase (ATP-hydrolyzing) sub... 665 0.0
gb|ABF50633.1| DNA topoisomerase IV subunit B [Spiroplasma ... 665 0.0
ref|ZP_01188363.1| DNA gyrase, B subunit [Halothermothrix o... 664 0.0
ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larv... 664 0.0
ref|YP_684896.1| type II DNA topoisomerase II (gyrase), sub... 662 0.0
ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Copro... 661 0.0
ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubac... 660 0.0
ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermo... 660 0.0
gb|ABI96238.1| DNA topoisomerase IV subunit B [Spiroplasma ... 660 0.0
ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clost... 659 0.0
ref|ZP_01576116.1| DNA gyrase, B subunit [Clostridium cellu... 659 0.0
ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter t... 657 0.0
ref|YP_001038771.1| DNA gyrase, B subunit [Clostridium ther... 655 0.0
ref|YP_361487.1| DNA gyrase, B subunit [Carboxydothermus hy... 654 0.0
ref|NP_634443.1| DNA gyrase, subunit B [Methanosarcina maze... 653 0.0
ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clos... 652 0.0
ref|NP_853202.1| DNA topoisomerase IV subunit B [Mycoplasma... 652 0.0
sp|Q59526|PARE_MYCGA DNA topoisomerase 4 subunit B (Topoiso... 652 0.0
gb|AAA91333.1| topoisomerase II subunit B 650 0.0
ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT... 650 0.0
ref|YP_565157.1| DNA gyrase, B subunit [Methanococcoides bu... 650 0.0
ref|ZP_02438913.1| hypothetical protein CLOSS21_01377 [Clos... 650 0.0
ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfring... 649 0.0
ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfring... 649 0.0
ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfr... 649 0.0
ref|YP_001111383.1| DNA gyrase, B subunit [Desulfotomaculum... 649 0.0
ref|YP_306285.1| DNA topoisomerase (ATP-hydrolyzing), subun... 649 0.0
ref|ZP_01695482.1| DNA gyrase, B subunit [Bacillus coagulan... 648 0.0
ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subun... 648 0.0
gb|ABI96230.1| DNA topoisomerase IV subunit B [Spiroplasma ... 647 0.0
gb|ABF50635.1| DNA topoisomerase IV subunit B [Spiroplasma ... 647 0.0
ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyr... 647 0.0
ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfring... 647 0.0
gb|ABF50634.1| DNA topoisomerase IV subunit B [Spiroplasma ... 645 0.0
ref|YP_699349.1| DNA topoisomerase IV subunit B [Clostridiu... 644 0.0
ref|ZP_02587033.1| DNA gyrase subunit B [Bacillus cereus G9... 643 0.0
ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringie... 643 0.0
gb|AAD00550.1| topoisomerase II ParE [Mycoplasma arthritidis] 642 0.0
ref|YP_696749.1| DNA topoisomerase IV subunit B [Clostridiu... 642 0.0
ref|ZP_02951777.1| DNA topoisomerase, GyrB/ParE subunit fam... 642 0.0
ref|ZP_02634396.1| DNA topoisomerase, GyrB/ParE subunit fam... 642 0.0
ref|NP_562985.1| DNA topoisomerase IV subunit B [Clostridiu... 642 0.0
ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea... 642 0.0
ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelo... 641 0.0
ref|YP_001664019.1| DNA topoisomerase IV, B subunit [Thermo... 641 0.0
ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Pepto... 640 0.0
gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 640 0.0
ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L... 640 0.0
ref|YP_642798.1| DNA gyrase, B subunit [Rubrobacter xylanop... 640 0.0
gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 640 0.0
ref|YP_001373376.1| DNA gyrase, B subunit [Bacillus cereus ... 640 0.0
gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis] 640 0.0
ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogen... 639 0.0
gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 639 0.0
emb|CAO87426.1| unnamed protein product [Microcystis aerugi... 639 0.0
ref|YP_001661669.1| DNA topoisomerase IV, B subunit [Thermo... 639 0.0
ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC... 639 0.0
ref|ZP_02689013.1| DNA gyrase, B subunit [Listeria monocyto... 639 0.0
ref|ZP_02525028.1| DNA gyrase subunit B [Bacillus cereus AH... 639 0.0
gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 639 0.0
ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Cli... 639 0.0
ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea... 638 0.0
gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 638 0.0
ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheye... 638 0.0
ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1]... 638 0.0
ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri ... 638 0.0
ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aerug... 638 0.0
ref|YP_001086468.1| DNA gyrase subunit B [Clostridium diffi... 637 0.0
ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiens... 637 0.0
ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC... 637 0.0
gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 637 0.0
ref|YP_001393441.1| GyrB1 [Clostridium kluyveri DSM 555] >g... 637 0.0
gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 637 0.0
ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis s... 637 0.0
ref|YP_001642902.1| DNA gyrase, B subunit [Bacillus weihens... 637 0.0
ref|ZP_01189203.1| DNA gyrase, B subunit [Halothermothrix o... 637 0.0
gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 637 0.0
ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ... 636 e-180
gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 635 e-180
gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 635 e-180
ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Rumin... 635 e-180
gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 635 e-180
ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clost... 635 e-180
gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 635 e-180
gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 635 e-180
gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 634 e-180
gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 634 e-180
gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 634 e-180
gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 634 e-180
gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 634 e-180
ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus... 634 e-180
ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E... 634 e-180
ref|ZP_02847526.1| DNA gyrase, B subunit [Paenibacillus sp.... 634 e-180
gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 634 e-180
gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 633 e-179
emb|CAO81188.1| DNA gyrase subunit B [Candidatus Cloacamona... 633 e-179
gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 633 e-179
gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 633 e-179
gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 633 e-179
ref|ZP_02420174.1| hypothetical protein ANACAC_02785 [Anaer... 632 e-179
ref|NP_783871.1| DNA gyrase, B subunit [Lactobacillus plant... 632 e-179
gb|AAO45882.1| DNA gyrase subunit B [Mesoplasma chauliocola] 632 e-179
gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 632 e-179
ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pne... 632 e-179
gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 632 e-179
ref|YP_517777.1| hypothetical protein DSY1544 [Desulfitobac... 632 e-179
ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustoph... 632 e-179
gb|AAZ06864.1| DNA topoisomerase IV subunit B [Acholeplasma... 632 e-179
ref|YP_278710.1| topoisomerase IV subunit B [Mycoplasma syn... 632 e-179
ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Rumin... 632 e-179
gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 631 e-179
ref|ZP_02693363.1| DNA gyrase subunit B [Epulopiscium sp. '... 630 e-179
ref|YP_428890.1| DNA gyrase, B subunit [Moorella thermoacet... 630 e-178
ref|YP_001734595.1| DNA gyrase, B subunit [Synechococcus sp... 630 e-178
ref|YP_173510.1| DNA topoisomerase IV subunit B [Bacillus c... 630 e-178
ref|ZP_01968095.1| hypothetical protein RUMTOR_01662 [Rumin... 629 e-178
ref|ZP_01368598.1| DNA topoisomerase II [Desulfitobacterium... 628 e-178
gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 628 e-178
ref|YP_001842821.1| DNA gyrase subunit B [Lactobacillus fer... 628 e-178
ref|ZP_02431709.1| hypothetical protein CLOSCI_01939 [Clost... 628 e-178
gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyr... 626 e-177
gb|ABI96231.1| DNA topoisomerase IV subunit B [Entomoplasma... 626 e-177
ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus therm... 625 e-177
ref|ZP_02913834.1| DNA gyrase, B subunit [Geobacillus sp. W... 625 e-177
gb|ABF50626.1| DNA topoisomerase IV subunit B [Spiroplasma ... 625 e-177
ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botul... 625 e-177
ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevi... 625 e-177
ref|YP_073835.1| DNA gyrase B subunit [Symbiobacterium ther... 624 e-177
ref|ZP_02172054.1| DNA topoisomerase (ATP-hydrolyzing) [Bac... 624 e-177
gb|ABF50630.1| DNA topoisomerase IV subunit B [Spiroplasma ... 624 e-177
ref|ZP_02082555.1| hypothetical protein CLOBOL_00067 [Clost... 624 e-176
ref|ZP_02026375.1| hypothetical protein EUBVEN_01633 [Eubac... 623 e-176
ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clost... 622 e-176
gb|ABF47145.1| DNA topoisomerase IV subunit B [Entomoplasma... 622 e-176
ref|YP_001389375.1| DNA gyrase, B subunit [Clostridium botu... 622 e-176
ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium m... 622 e-176
gb|ABF50628.1| DNA topoisomerase IV subunit B [Spiroplasma ... 622 e-176
ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beije... 621 e-176
ref|YP_001785341.1| DNA gyrase, B subunit [Clostridium botu... 620 e-175
ref|ZP_02210470.1| hypothetical protein CLOBAR_00007 [Clost... 620 e-175
dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis] 619 e-175
ref|NP_813818.1| DNA gyrase, B subunit [Enterococcus faecal... 619 e-175
ref|YP_001518793.1| DNA gyrase, B subunit [Acaryochloris ma... 619 e-175
ref|YP_001884271.1| DNA gyrase, B subunit [Clostridium botu... 619 e-175
ref|NP_072865.1| DNA topoisomerase IV, B subunit [Mycoplasm... 618 e-175
ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus sui... 618 e-175
ref|YP_278835.1| topoisomerase IV subunit B [Mycoplasma hyo... 617 e-175
ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaer... 617 e-175
ref|YP_001317908.1| DNA gyrase, B subunit [Alkaliphilus met... 617 e-174
ref|YP_380421.1| DNA gyrase subunit B [Synechococcus sp. CC... 616 e-174
ref|NP_802640.1| DNA gyrase subunit B [Streptococcus pyogen... 616 e-174
ref|YP_115550.1| topoisomerase IV subunit B [Mycoplasma hyo... 616 e-174
ref|YP_001779632.1| DNA gyrase, B subunit [Clostridium botu... 616 e-174
ref|YP_376151.1| DNA gyrase subunit B [Synechococcus sp. CC... 616 e-174
ref|YP_001884982.1| DNA gyrase subunit B [Clostridium botul... 616 e-174
ref|YP_287434.1| topoisomerase IV subunit B [Mycoplasma hyo... 615 e-174
gb|AAO67726.1| DNA gyrase subunit B [Mesoplasma photuris] 615 e-174
ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase... 615 e-174
emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus ... 615 e-174
ref|YP_001252558.1| DNA gyrase subunit B [Clostridium botul... 615 e-174
gb|ABI96234.1| DNA topoisomerase IV subunit B [Mesoplasma g... 615 e-174
gb|ABI96236.1| DNA topoisomerase IV subunit B [Mesoplasma e... 615 e-174
ref|NP_757389.1| DNA gyrase subunit B [Mycoplasma penetrans... 615 e-174
ref|YP_001557135.1| DNA gyrase, B subunit [Clostridium phyt... 615 e-174
ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botul... 615 e-174
ref|ZP_02427288.1| hypothetical protein CLORAM_00666 [Clost... 614 e-174
ref|ZP_01468972.1| DNA topoisomerase IV subunit B [Synechoc... 613 e-173
ref|YP_001511572.1| DNA gyrase, B subunit [Alkaliphilus ore... 612 e-173
gb|ABF47144.1| DNA topoisomerase IV subunit B [Mesoplasma c... 612 e-173
ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faec... 612 e-173
ref|NP_876187.1| DNA gyrase subunit B [Prochlorococcus mari... 612 e-173
gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga m... 611 e-173
ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima... 611 e-173
ref|YP_135192.1| DNA gyrase subunit B [Haloarcula marismort... 611 e-173
ref|YP_001223870.1| DNA gyrase subunit B [Synechococcus sp.... 611 e-173
ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus mari... 611 e-173
gb|ABF50629.1| DNA topoisomerase IV subunit B [Spiroplasma ... 610 e-173
ref|ZP_02442896.1| hypothetical protein ANACOL_02196 [Anaer... 610 e-173
gb|ABF50632.1| DNA topoisomerase IV subunit B [Entomoplasma... 610 e-172
ref|YP_001243699.1| DNA gyrase, B subunit [Thermotoga petro... 610 e-172
ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus m... 610 e-172
ref|ZP_01084512.1| DNA topoisomerase IV subunit B [Synechoc... 609 e-172
ref|YP_001738139.1| DNA gyrase, B subunit [Thermotoga sp. R... 609 e-172
ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp... 609 e-172
ref|ZP_01544922.1| DNA gyrase, B subunit [Oenococcus oeni A... 609 e-172
ref|NP_896190.1| DNA gyrase subunit B [Synechococcus sp. WH... 608 e-172
ref|YP_001688947.1| DNA topoisomerase (ATP-hydrolyzing) sub... 608 e-172
ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus saliva... 607 e-172
ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis s... 607 e-172
ref|YP_001450712.1| DNA gyrase, B subunit [Streptococcus go... 607 e-172
ref|YP_001016177.1| DNA gyrase subunit B [Prochlorococcus m... 607 e-172
ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus ... 607 e-172
ref|YP_001620025.1| DNA gyrase, subunit B [Acholeplasma lai... 607 e-172
gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii] 607 e-172
gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii... 607 e-171
ref|YP_001727282.1| DNA gyrase, B subunit [Leuconostoc citr... 607 e-171
ref|YP_001551646.1| DNA gyrase, subunit B [Prochlorococcus ... 606 e-171
ref|NP_348254.1| DNA topoisomerase IV subunit B [Clostridiu... 606 e-171
ref|ZP_00592416.1| DNA gyrase, B subunit [Prosthecochloris ... 606 e-171
gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira ... 606 e-171
ref|YP_001226348.1| DNA gyrase subunit B [Synechococcus sp.... 605 e-171
ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus san... 605 e-171
ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechoc... 605 e-171
ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis s... 605 e-171
ref|ZP_02079808.1| hypothetical protein CLOLEP_01253 [Clost... 605 e-171
ref|ZP_02949739.1| DNA gyrase subunit B [Clostridium butyri... 605 e-171
gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii] 605 e-171
gb|ABF50631.1| DNA topoisomerase IV subunit B [Spiroplasma ... 604 e-171
ref|ZP_02621578.1| DNA gyrase subunit B [Clostridium botuli... 604 e-171
ref|YP_001395527.1| GyrB2 [Clostridium kluyveri DSM 555] >g... 604 e-171
gb|ABI96240.1| DNA topoisomerase IV subunit B [Spiroplasma ... 604 e-171
ref|NP_663136.1| DNA gyrase subunit B [Chlorobium tepidum T... 603 e-171
ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp.... 603 e-170
ref|YP_001270618.1| DNA gyrase, B subunit [Lactobacillus re... 603 e-170
ref|YP_001812510.1| DNA gyrase, B subunit [Exiguobacterium ... 603 e-170
ref|YP_878399.1| DNA topoisomerase IV subunit B [Clostridiu... 603 e-170
ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechoc... 603 e-170
ref|ZP_01273837.1| DNA gyrase, B subunit [Lactobacillus reu... 603 e-170
gb|ABS84203.1| DNA gyrase B subunit [Lactobacillus reuteri] 603 e-170
ref|NP_893954.1| DNA gyrase subunit B [Prochlorococcus mari... 603 e-170
sp|O29720|GYRB_ARCFU DNA gyrase subunit B 602 e-170
ref|YP_292406.1| DNA gyrase subunit B [Prochlorococcus mari... 602 e-170
gb|ABI96232.1| DNA topoisomerase IV subunit B [Mesoplasma s... 602 e-170
ref|YP_729329.1| DNA gyrase subunit B [Synechococcus sp. CC... 601 e-170
ref|YP_817550.1| DNA gyrase, B subunit [Leuconostoc mesente... 601 e-170
ref|YP_001015908.1| DNA gyrase subunit B [Prochlorococcus m... 601 e-170
ref|ZP_02995127.1| hypothetical protein CLOSPO_02249 [Clost... 601 e-170
ref|ZP_02617827.1| DNA topoisomerase, GyrB/ParE subunit fam... 601 e-170
ref|ZP_00232030.1| DNA topoisomerase II (N-terminal region)... 601 e-170
ref|YP_001255271.1| DNA topoisomerase IV subunit B [Clostri... 600 e-170
ref|YP_001716206.1| DNA gyrase, B subunit [Candidatus Desul... 600 e-170
ref|ZP_02024983.1| hypothetical protein EUBVEN_00202 [Eubac... 600 e-170
ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalac... 600 e-169
ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epide... 600 e-169
ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus m... 600 e-169
ref|ZP_00512186.1| DNA gyrase, B subunit [Chlorobium limico... 600 e-169
ref|NP_782360.1| DNA topoisomerase IV subunit B [Clostridiu... 600 e-169
sp|P34031|GYRB_SPICI DNA gyrase subunit B >gi|49348|emb|CAA... 599 e-169
gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalact... 599 e-169
ref|YP_001392050.1| DNA topoisomerase, GyrB/ParE subunit fa... 599 e-169
ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marin... 599 e-169
ref|ZP_02615485.1| DNA topoisomerase, GyrB/ParE subunit fam... 599 e-169
ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Strep... 599 e-169
gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemoly... 599 e-169
ref|YP_251920.1| DNA gyrase (topoisomerase II) subunit B [S... 599 e-169
ref|YP_001129544.1| DNA gyrase, B subunit [Prosthecochloris... 599 e-169
ref|YP_678024.1| DNA topoisomerase (ATP-hydrolyzing), subun... 598 e-169
sp|P43053|GYRB_MYCHO DNA gyrase subunit B >gi|453419|emb|CA... 598 e-169
emb|CAK98250.1| dna gyrase subunit b protein [Spiroplasma c... 598 e-169
ref|NP_721651.1| DNA gyrase subunit B [Streptococcus mutans... 597 e-169
ref|ZP_02091489.1| hypothetical protein FAEPRAM212_01769 [F... 597 e-169
ref|YP_001557422.1| DNA topoisomerase (ATP-hydrolyzing) [Cl... 597 e-169
gb|ABI96233.1| DNA topoisomerase IV subunit B [Entomoplasma... 597 e-169
ref|YP_910530.1| DNA gyrase, B subunit [Chlorobium phaeobac... 596 e-168
sp|P21558|GYRB_HALSQ DNA gyrase subunit B >gi|99223|pir||A3... 596 e-168
ref|YP_001010234.1| DNA gyrase subunit B [Prochlorococcus m... 596 e-168
ref|YP_001485107.1| DNA gyrase, subunit B [Prochlorococcus ... 595 e-168
ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus mari... 595 e-168
ref|YP_394618.1| DNA gyrase, B subunit [Lactobacillus sakei... 595 e-168
gb|ABB46480.1| DNA gyrase subunit B [Acholeplasma granularu... 595 e-168
ref|ZP_00589849.1| DNA gyrase, B subunit [Pelodictyon phaeo... 595 e-168
gb|AAM79083.1| putative DNA gyrase, subunit B [Streptococcu... 595 e-168
ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hu... 594 e-168
ref|YP_001245395.1| DNA gyrase, B subunit [Staphylococcus a... 593 e-167
ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureu... 593 e-167
ref|YP_015798.1| DNA gyrase subunit b [Mycoplasma mobile 16... 593 e-167
ref|YP_809655.1| DNA gyrase, B subunit [Oenococcus oeni PSU... 592 e-167
ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureu... 592 e-167
ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureu... 592 e-167
ref|YP_001311390.1| DNA topoisomerase IV subunit B [Clostri... 592 e-167
sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B 592 e-167
ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureu... 592 e-167
ref|NP_710186.1| DNA gyrase subunit B [Leptospira interroga... 592 e-167
gb|AAQ65248.1| DNA gyrase subunit B [Mesoplasma tabanidae] 592 e-167
ref|YP_803558.1| DNA gyrase, B subunit [Pediococcus pentosa... 591 e-167
ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceu... 591 e-167
ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aure... 591 e-167
ref|YP_862770.1| DNA gyrase subunit B [Gramella forsetii KT... 591 e-167
gb|AAN64015.1|AF434658_12 DNA gyrase subunit B [Leptospira ... 590 e-167
ref|YP_602130.1| DNA gyrase subunit B [Streptococcus pyogen... 590 e-167
ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureu... 590 e-167
ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermo... 590 e-166
ref|YP_805313.1| DNA gyrase, B subunit [Lactobacillus casei... 590 e-166
ref|YP_001128790.1| DNA gyrase subunit B [Streptococcus pyo... 590 e-166
gb|AAD52967.1|AF167102_1 DNA gyrase beta subunit [Acholepla... 589 e-166
ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulga... 589 e-166
ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus sapro... 589 e-166
ref|YP_378351.1| DNA gyrase, B subunit [Chlorobium chloroch... 588 e-166
gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetal... 588 e-166
ref|NP_606960.1| DNA gyrase subunit B [Streptococcus pyogen... 588 e-166
ref|ZP_01996408.1| hypothetical protein DORLON_02422 [Dorea... 588 e-166
ref|ZP_01386580.1| DNA gyrase, B subunit [Chlorobium ferroo... 588 e-166
ref|YP_373945.1| DNA gyrase, B subunit [Pelodictyon luteolu... 588 e-166
ref|NP_853506.1| DNA gyrase subunit B [Mycoplasma gallisept... 587 e-166
ref|YP_280001.1| DNA gyrase subunit B [Streptococcus pyogen... 587 e-166
ref|YP_596338.1| DNA gyrase subunit B [Streptococcus pyogen... 587 e-166
ref|YP_799525.1| DNA gyrase subunit B [Leptospira borgpeter... 587 e-166
ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera wats... 587 e-166
ref|ZP_01818935.1| DNA gyrase, B subunit [Streptococcus pne... 587 e-165
ref|ZP_02233711.1| hypothetical protein DORFOR_00562 [Dorea... 587 e-165
ref|ZP_01831932.1| DNA gyrase, B subunit [Streptococcus pne... 587 e-165
ref|ZP_01822171.1| DNA gyrase subunit B [Streptococcus pneu... 587 e-165
ref|YP_796580.1| DNA gyrase subunit B [Leptospira borgpeter... 586 e-165
ref|YP_001636597.1| DNA gyrase, B subunit [Chloroflexus aur... 586 e-165
ref|ZP_02043011.1| hypothetical protein RUMGNA_03815 [Rumin... 586 e-165
ref|ZP_01773218.1| Hypothetical protein COLAER_02252 [Colli... 586 e-165
gb|AAZ93013.1| DNA gyrase subunit B [Streptococcus pneumoni... 586 e-165
ref|ZP_02272284.1| DNA gyrase subunit B [Fusobacterium nucl... 586 e-165
ref|ZP_01824768.1| DNA gyrase, B subunit [Streptococcus pne... 586 e-165
ref|NP_345303.1| DNA gyrase subunit B [Streptococcus pneumo... 586 e-165
ref|ZP_01733001.1| DNA gyrase, B subunit [Flavobacteria bac... 585 e-165
ref|YP_446507.1| DNA gyrase, B subunit [Salinibacter ruber ... 585 e-165
ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya ... 585 e-165
gb|ACB42887.1| DNA topoisomerase IV subunit B [Paulinella c... 585 e-165
ref|ZP_02989617.1| DNA gyrase, B subunit [Exiguobacterium s... 584 e-165
ref|NP_970619.1| DNA gyrase, B subunit [Treponema denticola... 584 e-165
gb|AAU83823.1| DNA gyrase subunit B [uncultured archaeon GZ... 584 e-165
ref|YP_001410473.1| DNA gyrase, B subunit [Fervidobacterium... 584 e-165
gb|AAZ92994.1| DNA gyrase subunit B [Streptococcus pneumoniae] 584 e-165
ref|ZP_02715046.1| DNA gyrase, B subunit [Streptococcus pne... 584 e-165
ref|NP_268956.1| DNA gyrase subunit B [Streptococcus pyogen... 584 e-165
emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus ... 584 e-165
ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacte... 584 e-165
ref|YP_180759.1| DNA gyrase, B subunit [Dehalococcoides eth... 583 e-164
ref|ZP_02931917.1| DNA gyrase, B subunit [Ureaplasma urealy... 583 e-164
ref|NP_072663.1| DNA gyrase subunit B [Mycoplasma genitaliu... 583 e-164
gb|AAZ93001.1| DNA gyrase subunit B [Streptococcus pneumoniae] 583 e-164
gb|AAZ92992.1| DNA gyrase subunit B [Streptococcus pneumoniae] 583 e-164
ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacte... 583 e-164
ref|ZP_01967592.1| hypothetical protein RUMTOR_01139 [Rumin... 583 e-164
ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumonia... 583 e-164
ref|ZP_02709417.1| DNA gyrase, B subunit [Streptococcus pne... 583 e-164
emb|CAA58771.1| DNA gyrase B subunit; DNA topoisomerase (AT... 583 e-164
ref|ZP_01059741.1| DNA gyrase subunit B [Flavobacterium sp.... 583 e-164
emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus ... 583 e-164
ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1... 582 e-164
ref|YP_001304873.1| DNA gyrase, B subunit [Parabacteroides ... 582 e-164
>ref|NP_269104.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes M1 GAS]
gb|AAK33825.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes
M1 GAS]
Length = 650
Score = 1329 bits (3440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/650 (100%), Positives = 650/650 (100%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|YP_602297.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750]
gb|ABF37753.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750]
Length = 650
Score = 1328 bits (3437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/650 (99%), Positives = 650/650 (100%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDG+VYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|YP_282074.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005]
gb|AAZ51329.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005]
Length = 649
Score = 1327 bits (3434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/649 (99%), Positives = 649/649 (100%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+TKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF
Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD
Sbjct: 121 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED
Sbjct: 181 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM
Sbjct: 241 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES
Sbjct: 301 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP
Sbjct: 361 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT
Sbjct: 421 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 481 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP
Sbjct: 541 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 649
>ref|YP_280159.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180]
gb|AAX71804.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180]
Length = 650
Score = 1327 bits (3434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/650 (99%), Positives = 650/650 (100%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEK++YAWTDGELEDLR+EFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|NP_607109.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS8232]
gb|AAL97608.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes
MGAS8232]
Length = 650
Score = 1327 bits (3434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/650 (99%), Positives = 650/650 (100%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDG+VYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEK++YAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|YP_060046.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394]
gb|AAT86863.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394]
Length = 650
Score = 1326 bits (3432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/650 (99%), Positives = 649/650 (99%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDG+VYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEV SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVTSHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|NP_664428.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315]
gb|AAM79231.1| putative DNA topoisomerase IV subunit B [Streptococcus pyogenes
MGAS315]
Length = 650
Score = 1326 bits (3432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/650 (99%), Positives = 649/650 (99%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIV+
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVD 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|YP_596499.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429]
ref|YP_600379.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096]
gb|ABF31955.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429]
gb|ABF35835.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096]
Length = 650
Score = 1325 bits (3428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/650 (99%), Positives = 649/650 (99%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEK++YAWTDGELEDLR+EFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|YP_001128647.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes str.
Manfredo]
emb|CAM30423.1| topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo]
Length = 650
Score = 1324 bits (3427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/650 (99%), Positives = 649/650 (99%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDG+VYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLAR IVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARHIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|NP_802491.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes SSI-1]
dbj|BAC64324.1| putative DNA topoisomerase IV, subunit B [Streptococcus pyogenes
SSI-1]
Length = 649
Score = 1323 bits (3425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/649 (99%), Positives = 648/649 (99%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+TKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF
Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD
Sbjct: 121 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED
Sbjct: 181 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM
Sbjct: 241 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIV+S
Sbjct: 301 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP
Sbjct: 361 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT
Sbjct: 421 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP
Sbjct: 541 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 649
>ref|YP_598378.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270]
gb|ABF33834.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270]
Length = 650
Score = 1320 bits (3417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/650 (99%), Positives = 648/650 (99%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG
Sbjct: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL
Sbjct: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVT LKKVGTAPKSKSGTVVTFMPD
Sbjct: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTILKKVGTAPKSKSGTVVTFMPD 180
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE
Sbjct: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
Sbjct: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE
Sbjct: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT
Sbjct: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN
Sbjct: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI
Sbjct: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYKMSKGKGKTEK++YAWT GELEDLR+EFGKGAILQRYKGLGEMNANQLWETTMD
Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTYGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMD 600
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
>ref|NP_688163.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae 2603V/R]
gb|AAN00036.1|AE014244_13 DNA topoisomerase IV, B subunit [Streptococcus agalactiae 2603V/R]
Length = 653
Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/649 (86%), Positives = 615/649 (94%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
L K++IT+ NY DDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 5 LAKQDITVTNYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 64
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
G+ I V+INKDGS++V D GRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 65 GNRIDVIINKDGSITVTDHGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLH 124
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEI RDG++YRQRFENGGKPVTTLKK+GTAPKSKSGT V+FMPD
Sbjct: 125 GVGSSVVNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQ 184
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
+FSTIDFKFNTI+ERLKESAFLLKNV ++LTD R ++ EFHYENGVQDFVEYLNED
Sbjct: 185 SVFSTIDFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNED 244
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTP+++ EG++Q+F +EVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK+M
Sbjct: 245 KETLTPIMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSM 304
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSA+LSILVPE+HLQFEGQTKDKLGSPLARPIV+
Sbjct: 305 NDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDG 364
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSEKLT+FL+ENG++AS+L+RKAIKARDAREAARKARD+SRNGKK+KKDKGLLSGKLTP
Sbjct: 365 IVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTP 424
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKMADI+KNEEINT
Sbjct: 425 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINT 484
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M++TIGAGVG DFNL+DINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 485 MIHTIGAGVGPDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIA 544
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E + YAWTD ELE+LR++FGKG++LQRYKGLGEMNA+QLWETTM+P
Sbjct: 545 LPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNP 604
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRRQWIEDNVKFTLEENTVF
Sbjct: 605 ETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEENTVF 653
>ref|ZP_02920270.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gb|EDT47354.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 649
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/649 (89%), Positives = 619/649 (95%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI +NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
G I V++N+DGSV+V D GRGMPTG+HAMGIPTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GTQIDVILNQDGSVTVKDQGRGMPTGKHAMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSKSGT+VTFMPDD
Sbjct: 121 GVGSSVVNALSRWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTMVTFMPDD 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFKFNTI+ERLKESAFLLKNV ++LTD R ++ EFHYENGVQDFVEYLNED
Sbjct: 181 TIFSTTDFKFNTIAERLKESAFLLKNVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPVI++ G+DQ FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITKAM
Sbjct: 241 KETLTPVIWVTGEDQGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKAM 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARK+ LLKEKDKNLEGSDYREGLSAVLSILVPE+HLQFEGQTKDKLGSPLARPIV+S
Sbjct: 301 NDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPIVDS 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSEKLTFFLLENGEVAS+LVRKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 361 IVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKM+DILKNEEINT
Sbjct: 421 AQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF +E+ NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MIYTIGAGVGADFKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++ YAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 541 LPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTIDDLARAERRVSVLMGDK PRR+WIEDNVKFTLEENTVF
Sbjct: 601 ETRTLIRVTIDDLARAERRVSVLMGDKVEPRRKWIEDNVKFTLEENTVF 649
>ref|NP_735673.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae NEM316]
ref|ZP_00788540.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111]
emb|CAD46888.1| unknown [Streptococcus agalactiae NEM316]
gb|EAO72720.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111]
Length = 649
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/649 (85%), Positives = 615/649 (94%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ K++IT+ NY DDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKQDITVTNYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
G+ I V+INKDGS++V D GRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GNRIDVIINKDGSITVTDHGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEI RDG++YRQRFENGGKPVTTLKK+GTAPKSKSGT V+FMPD
Sbjct: 121 GVGSSVVNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQ 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
+FSTIDFKFNTI+ERLKESAFLLKNV ++LTD R ++ EFHYENGVQDFVEYLNED
Sbjct: 181 SVFSTIDFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTP+++ EG++Q+F +EVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK+M
Sbjct: 241 KETLTPIMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSM 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSA+LSILVPE+HLQFEGQTKDKLGSPLARPIV+
Sbjct: 301 NDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDG 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSEKLT+FL+ENG++AS+L+RKAIKARDAREAARKARD+SRNGKK+KKDKGLLSGKLTP
Sbjct: 361 IVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKMADI+KNEEINT
Sbjct: 421 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M++TIGAGVG DFN++DINYDK+IIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MIHTIGAGVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E + YAWTD ELE+LR++FGKG++LQRYKGLGEMNA+QLWETTM+P
Sbjct: 541 LPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRRQWIEDNVKFTLEENTVF
Sbjct: 601 ETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEENTVF 649
>ref|YP_139109.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMG
18311]
gb|AAV60294.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus LMG
18311]
Length = 649
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/649 (88%), Positives = 615/649 (94%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI +NNYNDDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V +NKDGSVSV+DSGRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDVIAVTLNKDGSVSVSDSGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDGSVYRQRFENGG PVT L+K+G APKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFKFNTISERLKESAFLLKNV M+LTDLRG++ + EEFHYENGVQDFV YLNED
Sbjct: 181 SIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPVIY++G QDF +E+ALQYNDG+SDNILSFVNNVRTKDGGSHETG KSAITKA
Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGSHETGFKSAITKAF 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSAV+S+LVPE+HLQFEGQTKDKLGSPLARPIV+
Sbjct: 301 NDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPIVDG 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSE LT+FL+ENG++AS+LVRKAIKARDAREAARKARD SRNGKKNKKDKGLLSGKLTP
Sbjct: 361 IVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT
Sbjct: 421 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADFNL+DINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E + YAWTDGELE+LR++FG+GA+LQRYKGLGEMNA+QLWETTM+P
Sbjct: 541 LPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE T F
Sbjct: 601 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTAF 649
>ref|YP_820096.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9]
gb|ABJ65900.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9]
Length = 649
Score = 1170 bits (3027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/649 (88%), Positives = 615/649 (94%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI +NNYNDDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V +NKDGSVSV+DSGRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDVIAVTLNKDGSVSVSDSGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDGSVYRQRFENGG PVT L+K+G APKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFKFNTISERLKESAFLLKNV M+LTDLRG++ + EEFHYENGVQDFV YLNED
Sbjct: 181 SIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPVIY++G QDF +E+ALQYNDG+SDNILSFVNNVRTKDGG+HETG KSAITKA
Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAITKAF 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSAV+S+LVPE+HLQFEGQTKDKLGSPLARPIV+
Sbjct: 301 NDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPIVDG 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSE LT+FL+ENG++AS+LVRKAIKARDAREAARKARD SRNGKKNKKDKGLLSGKLTP
Sbjct: 361 IVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT
Sbjct: 421 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADFNL+DINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E + YAWTDGELE+LR++FG+GA+LQRYKGLGEMNA+QLWETTM+P
Sbjct: 541 LPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE T F
Sbjct: 601 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTAF 649
>ref|ZP_00783003.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B]
gb|EAO78284.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B]
Length = 642
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/642 (86%), Positives = 610/642 (95%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
+ NY DDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I V+
Sbjct: 1 MTNYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60
Query: 69 INKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
INKDGS++V D GRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVGSSVV
Sbjct: 61 INKDGSITVTDHGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WLEVEI RDG++YRQRFENGGKPVTTLKK+GTAPKSKSGT V+FMPD +FSTID
Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTID 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
FKFNTI+ERLKESAFLLKNV ++LTD R ++ EFHYENGVQDFVEYLNEDKETLTP+
Sbjct: 181 FKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTPI 240
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
++ EG++Q+F +EVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK+MNDYARKT
Sbjct: 241 MFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKT 300
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LLKEKDKNLEGSDYREGLSA+LSILVPE+HLQFEGQTKDKLGSPLARPIV+SIVSEKLT
Sbjct: 301 GLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDSIVSEKLT 360
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
+FL+ENG++AS+L+RKAIKARDAREAARKARD+SRNGKK+KKDKGLLSGKLTPAQSKNAK
Sbjct: 361 YFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAK 420
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKMADI+KNEEINTM++TIGA
Sbjct: 421 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGA 480
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DFNL+DINYDK+IIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIALPPLYKM
Sbjct: 481 GVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKM 540
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
SKGKGK E + YAWTD ELE+LR++FGKG++LQRYKGLGEMNA+QLWETTM+PETRTLIR
Sbjct: 541 SKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRTLIR 600
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
VTI+DLARAERRV+VLMGDK PRRQWIEDNVKFTLEENTVF
Sbjct: 601 VTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEENTVF 642
>ref|YP_140999.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus
CNRZ1066]
gb|AAV62184.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus
CNRZ1066]
Length = 649
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/649 (88%), Positives = 614/649 (94%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI +NNYNDDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V +NKDGSVSV+DSGRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDVIAVTLNKDGSVSVSDSGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDGSVYRQRFENGG PVT L+K+G PKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKEPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFKFNTISERLKESAFLLKNV M+LTDLRG++ + EEFHYENGVQDFV YLNED
Sbjct: 181 SIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPVIY++G QDF +E+ALQYNDG+SDNILSFVNNVRTKDGG+HETG KSAITKA
Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAITKAF 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSAV+S+LVPE+HLQFEGQTKDKLGSPLARPIV+
Sbjct: 301 NDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPIVDG 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVSE LT+FL+ENG++AS+LVRKAIKARDAREAARKARD SRNGKKNKKDKGLLSGKLTP
Sbjct: 361 IVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT
Sbjct: 421 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADFNL+DINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E + YAWTDGELE+LR++FG+GA+LQRYKGLGEMNA+QLWETTM+P
Sbjct: 541 LPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE T F
Sbjct: 601 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTAF 649
>ref|ZP_00785709.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1]
gb|EAO75559.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1]
Length = 642
Score = 1167 bits (3019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/642 (86%), Positives = 609/642 (94%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
+ NY DDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I V+
Sbjct: 1 MTNYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60
Query: 69 INKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
INKDGS++V D GRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVGSSVV
Sbjct: 61 INKDGSITVTDHGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WLEVEI RDG++YRQRFENGGKPVTTLKK+GTAPKSKSGT V+FMPD +FSTID
Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTID 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
FKFNTI+ERLKESAFLLKNV ++LTD R ++ EFHYENGVQDFVEYLNEDKETLTP+
Sbjct: 181 FKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTPI 240
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
++ EG++Q+F +EVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK+MNDYARKT
Sbjct: 241 MFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKT 300
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LLKEKDKNLEGSDYREGLSA+LSILVPE+HLQFEGQTKDKLGSPLARPIV+ IVSEKLT
Sbjct: 301 GLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLT 360
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
+FL+ENG++AS+L+RKAIKARDAREAARKARD+SRNGKK+KKDKGLLSGKLTPAQSKNAK
Sbjct: 361 YFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAK 420
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKMADI+KNEEINTM++TIGA
Sbjct: 421 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGA 480
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DFNL+DINYDK+IIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIALPPLYKM
Sbjct: 481 GVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKM 540
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
SKGKGK E + YAWTD ELE+LR++FGKG++LQRYKGLGEMNA+QLWETTM+PETRTLIR
Sbjct: 541 SKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRTLIR 600
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
VTI+DLARAERRV+VLMGDK PRRQWIEDNVKFTLEENTVF
Sbjct: 601 VTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEENTVF 642
>ref|YP_329857.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae A909]
ref|ZP_00781632.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21]
ref|ZP_00789035.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515]
gb|ABA44378.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae A909]
gb|EAO61775.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21]
gb|EAO72232.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515]
Length = 642
Score = 1166 bits (3016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/642 (86%), Positives = 609/642 (94%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
+ NY DDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I V+
Sbjct: 1 MTNYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60
Query: 69 INKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
INKDGS++V D GRGMPTG HAMG PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVGSSVV
Sbjct: 61 INKDGSITVTDHGRGMPTGMHAMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WLEVEI RDG++YRQRFENGGKPVTTLKK+GTAPKSKSGT V+FMPD +FSTID
Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTID 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
FKFNTI+ERLKESAFLLKNV ++LTD R ++ EFHYENGVQDFVEYLNEDKETLTP+
Sbjct: 181 FKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTPI 240
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
++ EG++Q+F +EVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK+MNDYARKT
Sbjct: 241 MFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKT 300
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LLKEKDKNLEGSDYREGLSA+LSILVPE+HLQFEGQTKDKLGSPLARPIV+ IVSEKLT
Sbjct: 301 GLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLT 360
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
+FL+ENG++AS+L+RKAIKARDAREAARKARD+SRNGKK+KKDKGLLSGKLTPAQSKNAK
Sbjct: 361 YFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAK 420
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKMADI+KNEEINTM++TIGA
Sbjct: 421 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGA 480
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DFN++DINYDK+IIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIALPPLYKM
Sbjct: 481 GVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKM 540
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
SKGKGK E + YAWTD ELE+LR++FGKG++LQRYKGLGEMNA+QLWETTM+PETRTLIR
Sbjct: 541 SKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRTLIR 600
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
VTI+DLARAERRV+VLMGDK PRRQWIEDNVKFTLEENTVF
Sbjct: 601 VTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEENTVF 642
>gb|AAZ93048.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93084.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1158 bits (2996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRSDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93093.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93101.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|ZP_01831889.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75]
ref|ZP_02715084.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC0288-04]
ref|YP_001835513.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14]
emb|CAA91550.2| DNA topoisomerase IV [Streptococcus pneumoniae]
gb|AAZ93046.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93056.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93059.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93064.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93074.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93080.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93086.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93089.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|EDK71928.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75]
gb|ACB90048.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14]
gb|EDT95214.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC0288-04]
Length = 647
Score = 1158 bits (2995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93050.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93058.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1157 bits (2994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|ZP_02709661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC1873-00]
gb|EDT50152.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC1873-00]
Length = 647
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVA+QYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVAIQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|ZP_01817850.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71]
ref|ZP_01823111.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68]
ref|ZP_01824726.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70]
ref|ZP_01830868.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74]
ref|ZP_01835749.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72]
ref|ZP_02714484.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195]
ref|ZP_02717149.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC3059-06]
ref|ZP_02721444.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016]
gb|AAZ93049.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93053.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93060.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93063.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93065.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93066.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93067.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93068.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93069.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93071.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93072.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93073.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93085.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93087.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93088.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93098.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|EDK63812.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70]
gb|EDK68209.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74]
gb|EDK74088.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71]
gb|EDK78767.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68]
gb|EDK81165.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72]
gb|EDT91873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195]
gb|EDT97474.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC3059-06]
gb|EDT99096.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016]
Length = 647
Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93057.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1157 bits (2992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKN +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNATLSLTDKRSDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93047.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1157 bits (2992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLVAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93102.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1157 bits (2992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I E HYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--ELHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|NP_345341.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae TIGR4]
ref|ZP_01408368.1| hypothetical protein SpneT_02001165 [Streptococcus pneumoniae
TIGR4]
sp|Q59961|PARE_STRPN DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
gb|AAK74981.1| topoisomerase IV, subunit B [Streptococcus pneumoniae TIGR4]
gb|AAZ93045.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93061.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93099.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R ++ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTNEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEETTVF 647
>ref|ZP_02710308.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC1087-00]
ref|YP_001694306.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
Hungary19A-6]
gb|AAZ93051.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93062.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93070.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|ACA37201.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
Hungary19A-6]
gb|EDT91458.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
CDC1087-00]
Length = 647
Score = 1156 bits (2990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93054.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93055.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1156 bits (2990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++ YAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93052.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQ+NDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQHNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|NP_358350.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae R6]
ref|YP_816236.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae D39]
gb|AAK99560.1| Topoisomerase IV subunit B [Streptococcus pneumoniae R6]
gb|ABJ54831.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae D39]
Length = 647
Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTA KSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|ZP_01819718.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73]
gb|EDK77026.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73]
Length = 647
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/649 (87%), Positives = 612/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG++ FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGENNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT L+KEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLIKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93076.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93078.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93079.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93082.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93083.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93090.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93091.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1152 bits (2981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/649 (87%), Positives = 609/649 (93%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETG KSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+ VLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAO16800.1| ParE [Streptococcus mitis]
Length = 647
Score = 1152 bits (2980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/649 (87%), Positives = 611/649 (94%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG++Y+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KETLTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+E+GE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMEDGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF+LED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAW DGELE+LR++ GKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI++LARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIENLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAZ93081.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1152 bits (2980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/649 (87%), Positives = 608/649 (93%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETG KSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDY RKT LLKEKDKNLEGSDYREGL+ VLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYVRKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>gb|AAO16799.1| ParE [Streptococcus oralis]
Length = 647
Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/649 (87%), Positives = 610/649 (93%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV LNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSSLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPV+Y EG+D FQVE ALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KETLTPVLYFEGEDNGFQVEDALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+A +L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELAPNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF+LED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|YP_001450529.1| DNA topoisomerase IV, B subunit [Streptococcus gordonii str.
Challis substr. CH1]
gb|ABV11127.1| DNA topoisomerase IV, B subunit [Streptococcus gordonii str.
Challis substr. CH1]
Length = 649
Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/646 (87%), Positives = 612/646 (94%), Gaps = 2/646 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V+D GRGMP G HAMGIPTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVSDHGRGMPVGMHAMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSKSGT VTFMPDD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDD 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTI+ERLKESAFLLKNV++SLTD R + + EFHYENGV+DFV YLNED
Sbjct: 181 TIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEEV--EFHYENGVEDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPV+Y EG++ FQV+VALQYNDG+SDNILSFVNNVRTKDGG+HETGLK+AITKAM
Sbjct: 239 KETLTPVLYFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAITKAM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSAVLSILVPE+HLQFEGQTKDKLGSPLARP V+S
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPAVDS 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVS+KLTFFLLENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVG+DF LED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAG VYIA
Sbjct: 479 MIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK+E + YAWTDGEL+DLRR+FGKGA+LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE+
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEES 644
>gb|AAZ93075.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93092.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93095.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93096.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93097.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
gb|AAZ93100.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1150 bits (2976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/649 (87%), Positives = 609/649 (93%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETG KSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+ VLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEG+SAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGNSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|ZP_00874947.1| Gram positive topoisomerase IV, subunit B [Streptococcus suis
89/1591]
gb|EAP40880.1| Gram positive topoisomerase IV, subunit B [Streptococcus suis
89/1591]
Length = 649
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/649 (87%), Positives = 609/649 (93%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHH++WEIVDNAVDEALSGF
Sbjct: 1 MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS+SV+D GRGMP G HA G PTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLSVSDRGRGMPVGMHATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFE GGKPVTTL+K+GTAPKSK+GT VTFMPDD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDD 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFKFNTI+ERLKESAFLLK V M+LTD R + EE+HYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGEQ--EEYHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPV+Y EG+D FQV+VA+QYNDG+SDNILSFVNNVRTKDGG+HETGLK AITKAM
Sbjct: 239 KETLTPVLYFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAITKAM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVS+KLTFFLLENGE+AS+LVRKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVG+DF LED+NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAG VYIA
Sbjct: 479 MIYTIGAGVGSDFTLEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGKTEKIAYAW+DGELEDLR++FGKG ILQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKTEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRVSVLMGDK PRR+WIEDNVKFTLEE T F
Sbjct: 599 ETRTLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDNVKFTLEEATAF 647
>gb|AAZ93077.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 647
Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/649 (87%), Positives = 608/649 (93%), Gaps = 2/649 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETG KSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+ VLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAIL LRGKV+NT KAKMADILKN+EINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILSLRGKVVNTAKAKMADILKNKEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
ETRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 ETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 647
>ref|YP_001035185.1| DNA topoisomerase IV subunit B [Streptococcus sanguinis SK36]
gb|ABN44635.1| Topoisomerase IV subunit B, putative [Streptococcus sanguinis SK36]
Length = 649
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/646 (86%), Positives = 610/646 (94%), Gaps = 2/646 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++VAD GRGMP G+HAMGIPTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVADHGRGMPVGKHAMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSKSGT VTFMPDD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDD 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTI+ERLKESAFLLKNV++SLTD R + + EFHYENGV+DFV YLNED
Sbjct: 181 TIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEEV--EFHYENGVEDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KETLTPV+Y EG++ FQV+VALQYNDG++DNILSFVNNVRTKDGG+HETGLK+AITKAM
Sbjct: 239 KETLTPVLYFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAITKAM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE HLQFEGQTKDKLGSPLARP V+S
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPAVDS 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IVS+KLTFFLLENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKM+DILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMSDILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAGVG DF LED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAG VYIA
Sbjct: 479 MIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIA 538
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKGK+E + YAWTDGEL+DLRR+FGKGA+LQRYKGLGEMNA+QLWETTM+P
Sbjct: 539 LPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNP 598
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
+TRTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE+
Sbjct: 599 DTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEES 644
>gb|AAO16798.1| ParE [Streptococcus pneumoniae]
Length = 638
Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/640 (87%), Positives = 603/640 (94%), Gaps = 2/640 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGFGD I V IN
Sbjct: 1 NYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN 60
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN
Sbjct: 61 KDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNL 120
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
S+WLEVEITRDG++Y+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD IFST DFK
Sbjct: 121 SSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFSTTDFK 180
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+NTISERL ESAFLLKNV +SLTD R D+ + EFHYENGVQDFV YLNEDKETLTPV+Y
Sbjct: 181 YNTISERLNESAFLLKNVTLSLTDKRTDESV--EFHYENGVQDFVSYLNEDKETLTPVLY 238
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK MNDYARKT L
Sbjct: 239 FEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGL 298
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+ IV++KLTFF
Sbjct: 299 LKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFF 358
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTPAQSKN KN
Sbjct: 359 LMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKN 418
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINTM+YTIGAGV
Sbjct: 419 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGV 478
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK
Sbjct: 479 GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 538
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
GKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+PETRTLIRVT
Sbjct: 539 GKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVT 598
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
I+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 IEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 638
>gb|AAO16803.1| ParE [Streptococcus pneumoniae]
Length = 638
Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/640 (87%), Positives = 602/640 (94%), Gaps = 2/640 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGFGD I V IN
Sbjct: 1 NYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN 60
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN
Sbjct: 61 KDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNL 120
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
S+WLEVEITRDG++Y+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD IFST DFK
Sbjct: 121 SSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFSTTDFK 180
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+NTISERL ESAFLLKNV +SLTD R D+ + EFHYENGVQDFV YLNEDKETLTPV+Y
Sbjct: 181 YNTISERLNESAFLLKNVTLSLTDKRTDESV--EFHYENGVQDFVSYLNEDKETLTPVLY 238
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK MNDYARKT L
Sbjct: 239 FEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGL 298
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+ IV++KLTFF
Sbjct: 299 LKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFF 358
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTPAQSKN KN
Sbjct: 359 LMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKN 418
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINTM+YTIGAGV
Sbjct: 419 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGV 478
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIALPPLYKMSK
Sbjct: 479 GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEVGHVYIALPPLYKMSK 538
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
GKGK E++AYAWTDGELE+LR++FGKGA LQRYKGLGEMNA+QLWETTM+PETRTLIRVT
Sbjct: 539 GKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVT 598
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
I+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE TVF
Sbjct: 599 IEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF 638
>ref|NP_721590.1| DNA topoisomerase IV subunit B [Streptococcus mutans UA159]
gb|AAN58896.1|AE014957_9 putative DNA topoisomerase IV, subunit B [Streptococcus mutans
UA159]
Length = 649
Score = 1128 bits (2918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/649 (85%), Positives = 604/649 (93%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ KK+I INNYNDDAIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MAKKKININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
G+ I V+INKDGS++VAD GRGMPTG+HAMGIPTV+VIFT+LHAGGKFGQGGYKTSGGLH
Sbjct: 61 GNQIDVIINKDGSITVADHGRGMPTGKHAMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG VY+QRFE+GGKP TTL+KVG APKSKSGT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST +F +NTI+ERL ESAFLLKNV ++LTD R ++ FHYENGVQDFVEYLNED
Sbjct: 181 GIFSTTNFVYNTIAERLNESAFLLKNVTLTLTDERSEEIEHVAFHYENGVQDFVEYLNED 240
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPVIY EG++ DFQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITKAM
Sbjct: 241 KEILTPVIYFEGEEADFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKAM 300
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGLSAVLSILVPE+HLQFEGQTKDKLGSPLARPIV+
Sbjct: 301 NDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPIVDG 360
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
+V E+LT+FL+ENGE+AS+L+RKAIKAR+AREAARKARDDSRNGKKNKKDKGLLSGKLTP
Sbjct: 361 LVLEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGKKNKKDKGLLSGKLTP 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT KAKM DI+KNEEINT
Sbjct: 421 AQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNEEINT 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+YTIGAG G DF ++D NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIA
Sbjct: 481 MIYTIGAGAGPDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYKMSKGKG E + YAWTDGELEDLR++FGKGA+LQRYKGLGEMNA+QLWETTM+P
Sbjct: 541 LPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNP 600
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
E RTLIRVTI+DLARAERRV+VLMGDK PRR+WIEDNVKFTLEE+ VF
Sbjct: 601 ENRTLIRVTIEDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEESGVF 649
>dbj|BAB62879.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae]
Length = 619
Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/619 (86%), Positives = 588/619 (94%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I V+INKDGS++V D GRGMPTG HAM
Sbjct: 1 MYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIINKDGSITVTDHGRGMPTGMHAM 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVGSSVVNALS+WLEVEI RDG++YRQRFE
Sbjct: 61 GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEIIRDGAIYRQRFE 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMS 211
NGGKPVTTLKK+GTAPKSKSGT V+FMPD +FSTIDFKFNTI+ERLKESAFLLKNV ++
Sbjct: 121 NGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTIDFKFNTIAERLKESAFLLKNVTLT 180
Query: 212 LTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFS 271
LTD R ++ EFHYENGVQDFVEYLNEDKETLTP+++ EG++Q+F +EVALQYNDGFS
Sbjct: 181 LTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTPIMFFEGEEQEFHIEVALQYNDGFS 240
Query: 272 DNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVL 331
DNILSFVNNVRTKDGG+HETGLKSAITK+MNDYARKT LLKEKDKNLEGSDYREGLSA+L
Sbjct: 241 DNILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKTGLLKEKDKNLEGSDYREGLSAIL 300
Query: 332 SILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDA 391
SILVPE+HLQFEGQTKDKLGSPLARPIV+ IVSEKLT+FL+ENG++AS+L+RKAIKARDA
Sbjct: 301 SILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLTYFLMENGDLASNLIRKAIKARDA 360
Query: 392 REAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRK 451
REAARKARD+SRNGKK+KKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRK
Sbjct: 361 REAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRK 420
Query: 452 FQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDAD 511
FQAILPLRGKVLNT KAKMADI+KNEEINTM++TIGAGVG DFN++DINYDK+IIMTDAD
Sbjct: 421 FQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGAGVGPDFNIDDINYDKVIIMTDAD 480
Query: 512 TDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLR 571
TDGAHIQTLLLTFFYRYMRPLVE GHVYIALPPLYKMSKGKGK E + YAWTD ELE+LR
Sbjct: 481 TDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELR 540
Query: 572 REFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAP 631
++FGKG++LQRYKGLGEMNA+QLWETTM+PETRTLIRVTI+DLARAERRV+VLMGDK P
Sbjct: 541 QKFGKGSLLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPP 600
Query: 632 RRQWIEDNVKFTLEENTVF 650
RRQWIEDNVKFTLEENTVF
Sbjct: 601 RRQWIEDNVKFTLEENTVF 619
>ref|YP_001032825.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
MG1363]
emb|CAL98114.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
MG1363]
Length = 644
Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/644 (83%), Positives = 594/644 (92%), Gaps = 2/644 (0%)
Query: 7 ITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIK 66
I INNY+D AIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I
Sbjct: 3 IDINNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNKIT 62
Query: 67 VVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSS 126
V IN DGS+SV D GRGMP G+HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLHGVGSS
Sbjct: 63 VTINADGSLSVEDEGRGMPVGKHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS 122
Query: 127 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 186
VVNALS WLEVEITRDG+VYRQRFENGG P TTL+K+G APKSK+GT VTFMPD IFST
Sbjct: 123 VVNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFST 182
Query: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 246
+FK+N ISERL ESAFLLK V +SL D R D+ EEFHYENGVQDFV YLNEDK++LT
Sbjct: 183 TEFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVAYLNEDKDSLT 240
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
PV+Y EG+ F+VEVALQYNDG+S+NILSFVNNVRTKDGG+HE GLK+AITKAMN+YAR
Sbjct: 241 PVLYFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K NLLK+KDKNLEGSDYREGL+AVLS+L+PE+HLQFEGQTKDKLGSPLARP+V+S+VSEK
Sbjct: 301 KVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L+F+L+ENGE+A +L+RKAIKAR+AREAARKAR+DSRNGKK+KKDKGLLSGKLTPAQ+KN
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NTEKAKM DILKNEEINTM+YTI
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
GAGVGADF L D NYDK+IIMTDADTDGAHIQTLLLTFFYRYM+PLVEAGHVYIALPPLY
Sbjct: 481 GAGVGADFTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPLY 540
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 606
KMS+GKGK EKI YAWTDGEL +LR++FGK A LQRYKGLGEMNA+QLWETTMDPETRTL
Sbjct: 541 KMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTL 600
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
I+VTIDD+A+AE+RVSVLMGDK PRR+WIE+NVKFT+EE+T F
Sbjct: 601 IQVTIDDVAQAEKRVSVLMGDKVEPRRKWIENNVKFTMEEDTAF 644
>ref|NP_267135.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
Il1403]
gb|AAK05077.1|AE006332_6 topoisomerase IV subunit B (EC 5.99.1.-) [Lactococcus lactis subsp.
lactis Il1403]
Length = 644
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/644 (83%), Positives = 591/644 (91%), Gaps = 2/644 (0%)
Query: 7 ITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIK 66
I INNY+D AIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I
Sbjct: 3 IDINNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIS 62
Query: 67 VVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSS 126
V IN DGS+SV D GRGMP G+HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLHGVGSS
Sbjct: 63 VTINADGSLSVEDEGRGMPVGKHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS 122
Query: 127 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 186
VVNALS WLEVEITRDG+VYRQRFENGG P TTL K+G APKSK+GT VTFMPD IFST
Sbjct: 123 VVNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFST 182
Query: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 246
+FK+N ISERL ESAFLLK V +SL D R D+ EEFHYENGVQDFV YLNEDK++LT
Sbjct: 183 TEFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLT 240
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
PV+Y EG+ F+VEVALQYNDG+S+NILSFVNNVRTKDGG+HE GLK+AITKAMN+YAR
Sbjct: 241 PVLYFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K NLLKEKDKNLEGSDYREGL+ VLS+L+PE+HLQFEGQTKDKLGSPLARP+V+S+VSEK
Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTVVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L+F+L+ENGE+A +L+RKAIKAR+AREAARKAR+DSRNGKK+KKDKGLLSGKLTPAQ+KN
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NTEKAKM DILKNEEINTM+YTI
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
GAGVGADF L D NYDKIIIMTDADTDGAHIQTLLLTFFYRYM+PLVEAGHVYIALPPLY
Sbjct: 481 GAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPLY 540
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 606
KMS+GKGK EKI YAWTDGEL +LR++FGK A LQRYKGLGEMNA+QLWETTMDPETRTL
Sbjct: 541 KMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTL 600
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
I+VTIDD A+AE+RVSVLMGDK PRR+WIE+NVKFT+EE TVF
Sbjct: 601 IQVTIDDAAQAEKRVSVLMGDKVEPRRKWIENNVKFTMEEETVF 644
>ref|YP_809024.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
SK11]
gb|ABJ72602.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
SK11]
Length = 644
Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/644 (83%), Positives = 593/644 (92%), Gaps = 2/644 (0%)
Query: 7 ITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIK 66
I INNY+D AIQVLEGLDAVRKRPGMYIGSTD TGLHHL+WEIVDNAVDEALSGFG+ I
Sbjct: 3 IDINNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNKIT 62
Query: 67 VVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSS 126
V IN DGS+SV D GRGMP G+HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLHGVGSS
Sbjct: 63 VTINADGSLSVEDEGRGMPVGKHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS 122
Query: 127 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 186
VVNALS WLEVEITRDG+VYRQRFENGG P TTL+K+G APKSK+GT VTFMPD IFST
Sbjct: 123 VVNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFST 182
Query: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 246
+FK+N ISERL ESAFLLK V +SL D R D+ EEFHYENGVQDFV YLNEDK++LT
Sbjct: 183 TEFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVAYLNEDKDSLT 240
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
PV+Y EG+ F+VEVALQYNDG+S+NILSFVNNVRTKDGG+HE GLK+AITKAMN+YAR
Sbjct: 241 PVLYFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K NLLK+KDKNLEGSDYREGL+AVLS+L+PE+HLQFEGQTKDKLGSPLARP+V+S+VSEK
Sbjct: 301 KVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L+F+L+ENGE+A +L+RKAIKAR+AREAARKAR+DSRNGKK+KKDKGLLSGKLTPAQ+KN
Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NTEKAKM DILKNEEINTM+YTI
Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
GAGVGADF L D NYDK+IIMTDADTDGAHIQTLLLTFFYRYM+PLVEAGHVYIALPPLY
Sbjct: 481 GAGVGADFTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPLY 540
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 606
KMS+GKGK EKI YAWTDGEL +LR++FGK A LQRYKGLGEMNA+QLWETTMDPETRTL
Sbjct: 541 KMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTL 600
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
I+VTIDD A+AE+RVSVLMGDK PRR+WIE+NVKFT+EE+T F
Sbjct: 601 IQVTIDDAAQAEKRVSVLMGDKVEPRRKWIENNVKFTMEEDTAF 644
>ref|ZP_00365753.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), B subunit [Streptococcus pyogenes M49 591]
Length = 524
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/524 (99%), Positives = 523/524 (99%)
Query: 127 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 186
VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST
Sbjct: 1 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 60
Query: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 246
IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT
Sbjct: 61 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 120
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR
Sbjct: 121 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 180
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK
Sbjct: 181 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 240
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN
Sbjct: 241 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 300
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI
Sbjct: 301 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 360
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVE GHVYIALPPLY
Sbjct: 361 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLY 420
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 606
KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL
Sbjct: 421 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 480
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
Sbjct: 481 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 524
>ref|NP_815328.1| DNA topoisomerase IV subunit B [Enterococcus faecalis V583]
dbj|BAB69480.1| topoisomerase IV B subunit [Enterococcus faecalis]
gb|AAO81398.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis V583]
Length = 685
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/638 (74%), Positives = 556/638 (87%), Gaps = 1/638 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N YND +IQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDNAVDEALSG+G++I V I
Sbjct: 7 NEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KD S+ VADSGRGMPTG HA GIPTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 QKDNSICVADSGRGMPTGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS WLEV I RDG Y +RFE+GGKPV TLKK+G K ++GT VTF+PDD IFST +F
Sbjct: 127 ALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKT-KKRNGTSVTFLPDDTIFSTTNF 185
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
+ ++ERL+ESAFLLK VK++LTD RG++P E FHYE G+++FV YLNE+K+TLTPV+
Sbjct: 186 SYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV 245
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y G + +VE+A QYNDG+S+N+LSFVNNVRTKDGG+HE G+K+++TKA N+YARK
Sbjct: 246 YFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVG 305
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLKEKDKNLEGSD+REGL+AVLSI VPE LQFEGQTK KLG+PLAR +V+++V E++ F
Sbjct: 306 LLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGF 365
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L EN E++ L+RKAIKAR+AREAARKAR++SRNGKK KK + LLSGKLTPAQS+N KK
Sbjct: 366 YLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKK 425
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NTEKAKM DILKNEEINTM+YTIGAG
Sbjct: 426 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAG 485
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
VG +F++ED NYDKIIIMTDADTDGAHIQ LLLTFFYRYM+PL+EAG VYIALPPLYK+S
Sbjct: 486 VGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVS 545
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
KG GK I YAWTDGEL ++ + GKG +LQRYKGLGEMNA QLWETTMDPETRTLIRV
Sbjct: 546 KGTGKKSVIEYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRV 605
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
IDD A+AERRV+ LMGDK PRR+WIE +V+FTLEE+
Sbjct: 606 RIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEED 643
>emb|CAA65022.1| DNA topoisomerase IV E subunit [Streptococcus pneumoniae]
Length = 555
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/557 (87%), Positives = 527/557 (94%), Gaps = 2/557 (0%)
Query: 94 PTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENG 153
PTV+VIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALS+WLEVEITRDG+VY+QRFENG
Sbjct: 1 PTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENG 60
Query: 154 GKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLT 213
GKPVTTLKK+GTA KSK+GT VTFMPD IFST DFK+NTISERL ESAFLLKNV +SLT
Sbjct: 61 GKPVTTLKKIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLT 120
Query: 214 DLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDN 273
D R D+ I EFHYENGVQDFV YLNEDKE LTPV+Y EG+D FQVEVALQYNDGFSDN
Sbjct: 121 DKRTDEAI--EFHYENGVQDFVSYLNEDKEILTPVLYFEGEDNGFQVEVALQYNDGFSDN 178
Query: 274 ILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSI 333
ILSFVNNVRTKDGG+HETGLKSAITK MNDYARKT LLKEKDKNLEGSDYREGL+AVLSI
Sbjct: 179 ILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSI 238
Query: 334 LVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDARE 393
LVPE+HLQFEGQTKDKLGSPLARP+V+ IV++KLTFFL+ENGE+AS+L+RKAIKARDARE
Sbjct: 239 LVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDARE 298
Query: 394 AARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQ 453
AARKARD+SRNGKKNKKDKGLLSGKLTPAQSKN KNELYLVEGDSAGGSAKQGRDRKFQ
Sbjct: 299 AARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQ 358
Query: 454 AILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTD 513
AILPLRGKV+NT KAKMADILKNEEINTM+YTIGAGVGADF++ED NYDKIIIMTDADTD
Sbjct: 359 AILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTD 418
Query: 514 GAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRRE 573
GAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGK E++AYAWTDGELE+L ++
Sbjct: 419 GAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELLKQ 478
Query: 574 FGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRR 633
FGKGA LQRYKGLGEMNA+QLWETTM+PETRTLIRVTI+DLARAERRV+VLMGDK PRR
Sbjct: 479 FGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRR 538
Query: 634 QWIEDNVKFTLEENTVF 650
+WIEDNVKFTLEE TVF
Sbjct: 539 KWIEDNVKFTLEEATVF 555
>ref|ZP_00605191.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO]
gb|EAN08477.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO]
Length = 665
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/628 (73%), Positives = 552/628 (87%), Gaps = 1/628 (0%)
Query: 20 LEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVAD 79
+EGL+AVRKRPGMYIGSTD+ GLHHL++EIVDNAVDEALSG+G +I V I++D S++VAD
Sbjct: 1 MEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVAD 60
Query: 80 SGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEI 139
SGRGMP G HA GIPTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS WL V I
Sbjct: 61 SGRGMPVGMHASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLIVTI 120
Query: 140 TRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLK 199
RDG Y+Q+F+NGGKP TLKK+G K+ +GT V F+PDD IFST F + ++ERL+
Sbjct: 121 VRDGVEYQQKFKNGGKPDGTLKKIGKTKKA-NGTTVHFLPDDTIFSTTKFSYEILAERLR 179
Query: 200 ESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQ 259
ESAFLLK VK+SL+DLRG++P+ E FHYE G+++FV+YLNE+K+TLTPV+Y G+ + +
Sbjct: 180 ESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDTLTPVVYFSGEKEGIE 239
Query: 260 VEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLE 319
VEVA QYNDG+S+N+LSFVNNVRTKDGG+HE G+K+A+TK+ N+YARK LLKE+DKNLE
Sbjct: 240 VEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKVGLLKERDKNLE 299
Query: 320 GSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVAS 379
GSD+REGL+AVLSI VPE LQFEGQTK+KLG+P+AR +V++++SE++ F+L EN E++
Sbjct: 300 GSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMGFYLQENSEMSQ 359
Query: 380 HLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDS 439
LVRKAIKAR+AREAARKAR++SRNGKK KK + LLSGKLTPAQS+N KKNELYLVEGDS
Sbjct: 360 MLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDS 419
Query: 440 AGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDI 499
AGGSAKQGRDRKFQAILPLRGKV+NTEKAKM DILKNEEINTM+YTIGAGVG +F++ED
Sbjct: 420 AGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDC 479
Query: 500 NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIA 559
NYDK+IIMTDADTDGAHIQ LLLTFFYRYM+PL+EAG VYIALPPLYK+SKG+GK + I
Sbjct: 480 NYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIE 539
Query: 560 YAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAER 619
YAWTD EL + ++ GKG +LQRYKGLGEMNA QLWETTMDP +RTLIRV IDD A+AER
Sbjct: 540 YAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAER 599
Query: 620 RVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
RV+ LMGDK PRR+WIE++V+FTLEE+
Sbjct: 600 RVTTLMGDKVEPRRKWIENHVQFTLEED 627
>ref|YP_535764.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius UCC118]
gb|ABD99681.1| Topoisomerase IV subunit B [Lactobacillus salivarius UCC118]
Length = 673
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/638 (72%), Positives = 543/638 (85%), Gaps = 1/638 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNYNDD+IQVL+GL+AVRKRPGMYIGSTD+ GLHHL++EI DNAVDEALSG+G +I V+I
Sbjct: 4 NNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYGKEINVII 63
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
+KD S++V D+GRGMP G H+MGIPTV+VIFT+LHAGGKFGQG YKTSGGLHGVG+SVVN
Sbjct: 64 HKDDSITVVDNGRGMPVGMHSMGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGASVVN 123
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS+ L V RDG Y + F NGG+PV TL+K+G A K KSGT VTF PD IFST +
Sbjct: 124 ALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKA-KRKSGTKVTFKPDANIFSTTKY 182
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
FNT++ERL+ESAFLLK VK++LTD R D EEF Y G+++FVEYLNEDK+ L PV+
Sbjct: 183 NFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVLGPVM 242
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y EG+ +VEVA QYNDG+S+ I+SFVNNVRTKDGG+HE G+K+A TKA N+YARK N
Sbjct: 243 YFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEYARKIN 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK+KDKNLEGSD REGLSAV+S+ +PE+ LQFEGQTK KLG+P AR IV+S+V+E+L +
Sbjct: 303 LLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVNEQLGY 362
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL+ENG+ A LVRK+IKAR+AREAARKARD+SRNGKK +K + LLSGKLTPAQSKNAK+
Sbjct: 363 FLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKR 422
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
NEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT+KAK+ DI+KNEEINTM+YTIGAG
Sbjct: 423 NELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAG 482
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
VGA+FN+ D NYDK+IIMTDADTDGAHIQTLLLTFFY+YMRP++ AG VYIALPPLYK+
Sbjct: 483 VGAEFNINDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIE 542
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
K K I YAWTD ELE +E KG LQRYKGLGEMNA+QLWETTM+PETRTL+RV
Sbjct: 543 KTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRV 602
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
IDD AE+RV+ LMGDK PRR+WIE NVKFTLEE+
Sbjct: 603 RIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFTLEED 640
>ref|YP_395587.1| DNA topoisomerase IV subunit B [Lactobacillus sakei subsp. sakei
23K]
emb|CAI55278.1| Topoisomerase IV, subunit B [Lactobacillus sakei subsp. sakei 23K]
Length = 663
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/636 (72%), Positives = 533/636 (83%), Gaps = 1/636 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
+YND++IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL+GFG +I V I
Sbjct: 7 DYNDNSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGAEINVTIG 66
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S+SV D GRGMPTG H GIPT++VI T+LHAGGKF Q YKTSGGLHGVG+SVVNA
Sbjct: 67 ADNSISVRDHGRGMPTGMHQSGIPTIEVILTVLHAGGKFTQNSYKTSGGLHGVGASVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WL V + RDG Y +RFENGG PV TLKKVG A +GT++TF PD IF +
Sbjct: 127 LSEWLTVRVVRDGVAYEERFENGGHPVGTLKKVGKA-NEPNGTLITFKPDASIFQVTTYN 185
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+NT++ERL+ESAFLLK+VK++LTDLR D + FHY G+Q FV+YLNEDK+T+ +Y
Sbjct: 186 YNTLAERLRESAFLLKDVKITLTDLRADPAKEDVFHYPEGIQSFVDYLNEDKDTIGNKLY 245
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG +D +VE A QYNDG+S+NI+SFVNNVRT DGG+HE G+K+ +TKA NDYARK NL
Sbjct: 246 FEGTKEDIEVEFAGQYNDGYSENIMSFVNNVRTGDGGTHEAGMKAGLTKAFNDYARKVNL 305
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKE+DKN+EGSD REGLSAVLS+ +PE+ LQFEGQTK KLGSP AR V+++V E+++FF
Sbjct: 306 LKERDKNMEGSDVREGLSAVLSVRIPEELLQFEGQTKGKLGSPQARTAVDNLVYEQMSFF 365
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
LLENGE A LVRK++KAR+AREAARKAR+ SRNGKK KK GLLSGKLTPAQSKNA KN
Sbjct: 366 LLENGEFAQALVRKSLKAREAREAARKAREQSRNGKKKKKSDGLLSGKLTPAQSKNAAKN 425
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT+KAK+ +ILKNEEINTM+YTIGAGV
Sbjct: 426 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQEILKNEEINTMIYTIGAGV 485
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GA+F +ED NYDKIIIMTDADTDGAHIQ LLLTFFYRYMRPL+EAG VYIALPPLYK+ K
Sbjct: 486 GAEFKIEDSNYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGKVYIALPPLYKLQK 545
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G G KIAYAWTD EL+ + +E GKG QR+KGLGEMNA+QLW+TTMDP +RTLIRV
Sbjct: 546 GAGGKTKIAYAWTDDELKVVAKEMGKGYSQQRFKGLGEMNADQLWDTTMDPTSRTLIRVR 605
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
IDD A AERRV+ LMGDK PRR+WIE+NVKFTL E
Sbjct: 606 IDDAALAERRVTTLMGDKVEPRRKWIEENVKFTLAE 641
>gb|AAZ93094.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
Length = 536
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/538 (88%), Positives = 505/538 (93%), Gaps = 2/538 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS WLEVEITRDG+VY+QRFENGGKPVTTLKK+GTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV++KLTFFL+ENGE+AS+L+RKAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTP
Sbjct: 359 IVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTP 418
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINT
Sbjct: 419 AQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINT 478
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY 539
M+YTIGAGVGADF++ED NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY
Sbjct: 479 MIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY 536
>ref|NP_979914.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 10987]
ref|ZP_02257425.1| DNA topoisomerase IV subunit B [Bacillus cereus AH187]
gb|AAS42522.1| DNA topoisomerase IV, B subunit [Bacillus cereus ATCC 10987]
Length = 654
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 541/635 (85%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK +LL
Sbjct: 244 SGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+++ ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|ZP_02595925.1| DNA topoisomerase IV subunit B [Bacillus cereus H3081.97]
ref|ZP_02601736.1| DNA topoisomerase IV subunit B [Bacillus cereus 03BB108]
Length = 654
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 541/635 (85%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK +LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+++ ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|YP_037677.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
konkukian str. 97-27]
ref|YP_084890.1| DNA topoisomerase IV subunit B [Bacillus cereus E33L]
ref|ZP_02260705.1| DNA topoisomerase IV subunit B [Bacillus cereus AH820]
ref|ZP_02540876.1| DNA topoisomerase IV subunit B [Bacillus cereus W]
ref|ZP_02589172.1| DNA topoisomerase IV subunit B [Bacillus cereus NVH0597-99]
gb|AAT60491.1| topoisomerase IV, subunit B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gb|AAU16958.1| topoisomerase IV, subunit B [Bacillus cereus E33L]
Length = 654
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 540/635 (85%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK +LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDSVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|YP_895992.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al
Hakam]
gb|ABK86485.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al
Hakam]
Length = 654
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 540/635 (85%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+++ ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|NP_845922.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Ames]
ref|YP_020292.2| DNA topoisomerase IV subunit B [Bacillus anthracis str. 'Ames
Ancestor']
ref|YP_029649.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Sterne]
ref|ZP_00393835.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), B subunit [Bacillus anthracis str. A2012]
ref|ZP_02215674.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488]
ref|ZP_02394766.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442]
ref|ZP_02398822.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193]
ref|ZP_02606104.1| DNA topoisomerase IV subunit B [Bacillus anthracis Tsiankovskii-I]
ref|ZP_02879623.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465]
ref|ZP_02898561.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389]
ref|ZP_02934928.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174]
gb|AAP27408.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Ames]
gb|AAT32767.2| DNA topoisomerase IV, B subunit [Bacillus anthracis str. 'Ames
Ancestor']
gb|AAT55700.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Sterne]
gb|EDR18760.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488]
gb|EDR86812.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193]
gb|EDR90919.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442]
gb|EDS95802.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389]
gb|EDT18340.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465]
gb|EDT67202.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174]
Length = 654
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 539/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDSVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|ZP_00240926.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241]
gb|EAL11468.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241]
Length = 654
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 538/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+ + PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDAIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|YP_001646088.1| DNA topoisomerase IV, B subunit [Bacillus weihenstephanensis KBAB4]
gb|ABY44460.1| DNA topoisomerase IV, B subunit [Bacillus weihenstephanensis KBAB4]
Length = 654
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/635 (69%), Positives = 536/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDGS+Y QRFENGG P TTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK +LL
Sbjct: 244 SGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REGL++++S+ VPE LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F +EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELGGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD +RAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|NP_243006.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125]
dbj|BAB05859.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125]
Length = 655
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/637 (70%), Positives = 533/637 (83%), Gaps = 4/637 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YNDDAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDNAVDEAL+G+G +I V I+K
Sbjct: 9 YNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGSNINVTIHK 68
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D SVSV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGY TSGGLHGVG+SVVNAL
Sbjct: 69 DQSVSVRDEGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGASVVNAL 128
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL VEI RDG VY QRFENGGKP TTL+K G ++GT + F PD +FST +F
Sbjct: 129 SEWLIVEIKRDGWVYEQRFENGGKPSTTLEKKGKT--RQTGTTIHFKPDPTVFSTTNFNV 186
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+SERL+E+AFLLK +K+ L DLR D E FHYE+G++ FVEYLNEDKETL PV++
Sbjct: 187 ETLSERLREAAFLLKGLKIELVDLRDDTK--EVFHYEDGIKAFVEYLNEDKETLHPVVFF 244
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ ++E A Q+NDG+++N+LSFVNNVRTKDGG+HE G K+A+T+A+N+YARK LL
Sbjct: 245 NGESNGIEIEFAFQFNDGYTENVLSFVNNVRTKDGGTHELGAKTAMTRAVNEYARKAKLL 304
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNL+GSD REG +A++S+ VPE+ LQFEGQTK KLG+P AR V+S+VSEKL+FF
Sbjct: 305 KEKDKNLDGSDIREGFTALISVRVPEEKLQFEGQTKGKLGTPEARSAVDSLVSEKLSFFF 364
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN E++S L+RKAIKA AREAARKAR+++R+GKKN++ LLSGKLTPAQSKN ++NE
Sbjct: 365 EENPEMSSMLIRKAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTPAQSKNPQRNE 424
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ DI+KNEEI T+++TIGAGVG
Sbjct: 425 LYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRTIIHTIGAGVG 484
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
ADF L+D+NYDK++IMTDADTDGAHIQ LLLTFFYRYMRPLVEAG VYIALPPLYK+SKG
Sbjct: 485 ADFTLDDVNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKVSKG 544
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
G E + YAW + L+ ++ G+G +QRYKGLGEMNA QLWETTMDPETRTLIRV I
Sbjct: 545 SGAKEVVEYAWDEDGLKKAIKKVGRGYTIQRYKGLGEMNATQLWETTMDPETRTLIRVRI 604
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
DD ARAE+RVS LMGDK PRR+WIE +V F LEE T
Sbjct: 605 DDAARAEKRVSTLMGDKVEPRRKWIESHVAFGLEEET 641
>ref|ZP_02914154.1| DNA topoisomerase IV, B subunit [Geobacillus sp. WCH70]
gb|EDT34720.1| DNA topoisomerase IV, B subunit [Geobacillus sp. WCH70]
Length = 656
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/640 (69%), Positives = 543/640 (84%), Gaps = 4/640 (0%)
Query: 8 TINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKV 67
++ YNDDAIQVLEGL+AVR+RPGMYIGSTD+ GLHHL++EIVDN+VDEAL+G+G+ I V
Sbjct: 5 SVYEYNDDAIQVLEGLEAVRRRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILV 64
Query: 68 VINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127
I+KD S++V D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SV
Sbjct: 65 KIHKDNSITVLDEGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASV 124
Query: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187
VNALS WL V I RDG +Y+QRFE+GGKPVTTL+K+GT +K+GT++ F PD IFST
Sbjct: 125 VNALSEWLVVTIHRDGFIYQQRFEHGGKPVTTLEKIGTT--NKTGTIIQFKPDPTIFSTT 182
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F + T+SERL+ESAFLLK +K+ L D R + + F+YENG++ FVEYLNEDK+ L P
Sbjct: 183 TFNYETLSERLRESAFLLKGLKIELIDER--TGMRDVFYYENGIEAFVEYLNEDKDVLHP 240
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
V+Y EG+ +VE A Q+NDG+S+N+LSFVNNVRTKDGG+HE G K+A+T+ N+YARK
Sbjct: 241 VVYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARK 300
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
LLKEKDKNLEGSD REGLSA++S+ +PE LQFEGQTK KLG+ AR V+++VSE L
Sbjct: 301 MGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEHL 360
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
T+FL EN ++++ L++KAI+A AREAARKAR+++R+GKK K + +LSGKLTPAQS+N
Sbjct: 361 TYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLTPAQSRNP 420
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
KKNELYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADILKNEEINT+++ IG
Sbjct: 421 KKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEINTIIHAIG 480
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
GVG DF+L+DINYDK+IIMTDADTDGAHIQ LLLTFFYRYMRPL+EAG VYIALPPLYK
Sbjct: 481 GGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYK 540
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+SKG GK E I YAWTD +L+++ ++FGKG +QRYKGLGEMNA+QLWETTM+PETRTLI
Sbjct: 541 ISKGTGKKEIIEYAWTDEQLKEIVKKFGKGYTIQRYKGLGEMNADQLWETTMNPETRTLI 600
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
RV I+D ARAERRV+ LMGDK PRR+WIE NV F LE++
Sbjct: 601 RVRIEDAARAERRVTTLMGDKVEPRRKWIEANVAFGLEDD 640
>ref|YP_001375491.1| DNA topoisomerase IV, B subunit [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gb|ABS22496.1| DNA topoisomerase IV, B subunit [Bacillus cereus subsp. cytotoxis
NVH 391-98]
Length = 654
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/635 (69%), Positives = 535/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I V+I+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVIIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI TILHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKT--KESGTTMHFKPDSSIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+ + PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDAIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK +LL
Sbjct: 244 SGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REGL+AV+S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGLAAVVSVRVPEELLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
E +VA+ LV+KAIKA AREAARKAR+++R GKK K+ +G LSGKLTPAQS+N +KNE
Sbjct: 364 EETPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+ L+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFSIEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKSLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK E I YAW+D EL + ++ GKG ILQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKNEVIEYAWSDEELASVTKKVGKGYILQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|YP_079225.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
ref|YP_091642.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580]
gb|AAU23587.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
gb|AAU40949.1| ParE [Bacillus licheniformis DSM 13]
Length = 655
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/648 (68%), Positives = 540/648 (83%), Gaps = 7/648 (1%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M+ K+++ +YNDD+IQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDE L+G
Sbjct: 1 MVKKQQV---DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAG 57
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
GD I V I+KD S+SV D GRGMPTG H +G PT ++I T+LHAGGKFGQGGYKTSGGL
Sbjct: 58 HGDHIIVKIHKDNSISVQDRGRGMPTGMHKLGKPTPEIILTVLHAGGKFGQGGYKTSGGL 117
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS WL V I RDG+VYRQRFENGGKPVT+L K+GT K+GT++ F PD
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTT--KKTGTLIHFKPD 175
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
+FST F F T+SERL+ESAFLLK +K+ L D R D E F YENG++ FV YLNE
Sbjct: 176 PAMFSTTTFNFETLSERLRESAFLLKGLKIELIDER--DQTKETFLYENGIEAFVAYLNE 233
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
+K+ L+ V+ EG+ +V+ A Q+NDG+S+NILSFVNNVRTKDGG+HE+G K+A+T+A
Sbjct: 234 EKDALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
N+YARK LLKEKDKNLEG+D REGLSA++S+ +PE+ LQFEGQTK KLG+ AR V+
Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVD 353
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
+IVSE+L +FL EN E A+ LV+KAIKA AREAARKAR+++R+GKK KK + LSGKLT
Sbjct: 354 AIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQS+N KNELYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ADI KNEEIN
Sbjct: 414 PAQSRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
T+++ IG GVGADF++EDINYDK+IIMTDADTDGAHIQ LLLTFFYRYM+PL+E G V+I
Sbjct: 474 TIIHAIGGGVGADFDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 533
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYK+SKG GK E I YAW+D E++D+ ++ GKG +QRYKGLGEMNA+QLWETTM+
Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMN 593
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
PE+RTL+RV IDD AR ERRV+ LMGDK PRR+WIE NV F L+E +
Sbjct: 594 PESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEES 641
>ref|NP_833329.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 14579]
gb|AAP10530.1| Topoisomerase IV subunit B [Bacillus cereus ATCC 14579]
Length = 654
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 540/635 (85%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R+GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|ZP_02525290.1| DNA topoisomerase IV subunit B [Bacillus cereus AH1134]
Length = 654
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 540/635 (85%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG PVTTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D + + FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R+GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|ZP_02578635.1| DNA topoisomerase IV subunit B [Bacillus cereus B4264]
Length = 654
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 538/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG P TTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D I FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERNDLEDI--FHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKAIKA AREAARKAR+++R+GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F++EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|ZP_01174064.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
gb|EAR63223.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
Length = 661
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/637 (68%), Positives = 535/637 (83%), Gaps = 4/637 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
+YNDDAIQVLEGL+AVRKRPGMYIGSTDA GLHHL++EIVDN+VDEAL+G+GD I V I+
Sbjct: 11 DYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEALAGYGDHIIVKIH 70
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KD S+SV D GRGMPTG H +G PT ++I T+LHAGGKFGQGGYKTSGGLHGVG+SVVNA
Sbjct: 71 KDNSISVQDKGRGMPTGMHKLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVVNA 130
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WL V+I R+G VY QRFENGGKP TTL+KVG ++SGTV+ F PD IFST +
Sbjct: 131 LSEWLVVKIRRNGFVYEQRFENGGKPATTLEKVGKT--NQSGTVIHFKPDPAIFSTTVYN 188
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+ T+ ERL+ESAFL+K +K+ L D R D + FH+E G++ FVEYLNE+K+ L PV+
Sbjct: 189 YETLCERLRESAFLMKGMKIELIDERHDARDL--FHFETGIEAFVEYLNEEKDVLHPVVS 246
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG+ +V+ A Q+NDG+S+N+LSFVNNVRTKDGG+HE G K+A+T+ N+YARK L
Sbjct: 247 FEGEHNQIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTRVFNEYARKVGL 306
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNL+GSD REG SA++S+ VPE+ LQFEGQTK KLG+ AR V+++VSE L++F
Sbjct: 307 LKEKDKNLDGSDIREGFSAIISVRVPEELLQFEGQTKGKLGTSEARSAVDAVVSEHLSYF 366
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L EN ++S L++KAIKA AREAARKAR+++R GKK K+ + +LSGKLTPAQS+N +KN
Sbjct: 367 LEENPNISSLLIKKAIKAYQAREAARKAREEARGGKKRKRSEAVLSGKLTPAQSRNPQKN 426
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ DI KNEEINT+++ IGAGV
Sbjct: 427 ELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEINTIIHAIGAGV 486
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GADFN+ED+NY+K++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SK
Sbjct: 487 GADFNVEDVNYEKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSK 546
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G GK EKI YAW+D EL+ ++ GKG ++QRYKGLGEMNA+QLWETTMDPE+RTLIRV
Sbjct: 547 GIGKKEKIEYAWSDDELQGAMKKIGKGYMIQRYKGLGEMNADQLWETTMDPESRTLIRVR 606
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
IDD ARAERRV+ LMGDK PRR+WIE NV F LEE+
Sbjct: 607 IDDAARAERRVTTLMGDKVEPRRKWIETNVAFGLEED 643
>ref|ZP_02585488.1| DNA topoisomerase IV subunit B [Bacillus cereus G9842]
Length = 654
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/635 (69%), Positives = 538/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+GFGD+I VVI+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSISVIDKGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG++Y QRFENGG P TTL+K+G +SGT + F PD IFST ++ +
Sbjct: 128 SEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKT--KESGTTMHFKPDTTIFSTTNYNY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+ ERL+ESAFLLK +K+S+ D R D I FHYE G++ FV YLNE+K+++ PV+Y
Sbjct: 186 ETLCERLRESAFLLKGMKISIKDERNDLEDI--FHYETGIEAFVSYLNEEKDSIHPVVYF 243
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+A Q+NDG+S+NILSFVNNVRTKDGG+HE G K+A+T+ N+YARK +LL
Sbjct: 244 TGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLL 303
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REG++A++S+ VPE+ LQFEGQTK KLG+ AR +++IVSE L +FL
Sbjct: 304 KEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFL 363
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +VA+ LVRKA+KA AREAARKAR+++R+GKK KK +G LSGKLTPAQS+N +KNE
Sbjct: 364 EENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLTPAQSRNPQKNE 423
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT++Y IG GVG
Sbjct: 424 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVG 483
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F +EDINYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL+EAG V+IALPPLYK+SKG
Sbjct: 484 NEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKG 543
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
KGK+E I YAW+D EL+ + ++ GKG +LQRYKGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 544 KGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
DD ARAERRV+ LMGDK PRR+WIE NV+F ++E
Sbjct: 604 DDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQE 638
>ref|YP_804457.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745]
gb|ABJ68015.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745]
Length = 679
Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/637 (69%), Positives = 532/637 (83%), Gaps = 1/637 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
+Y+D +IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL G+G +I V I
Sbjct: 8 SYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGKEINVTIQ 67
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRGMP G H G PT +VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNA
Sbjct: 68 ADNSITVVDHGRGMPVGMHKSGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNA 127
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS L VEI RD Y + F NGG PV TLKKVG +K+GT VTF PD +IF+T F
Sbjct: 128 LSEKLTVEIVRDKVKYEETFVNGGHPVGTLKKVGKTT-NKNGTTVTFKPDKEIFTTTVFN 186
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
FNT++ RL+ESAFLL+ VK++LTD R EE+ Y+ G++ FV+YLNEDK+TL ++Y
Sbjct: 187 FNTLAVRLRESAFLLRGVKITLTDRREGHEQHEEYLYDEGIKQFVDYLNEDKDTLGNIMY 246
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
+G + +VEVA QYNDG+S+ ILSFVNNVRT+DGG+HE G++S TKA N++ARK L
Sbjct: 247 FDGTKKGIEVEVAGQYNDGYSETILSFVNNVRTRDGGTHEVGMRSGWTKAFNEFARKMGL 306
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNLEGSD REGLSAV+S+ +PE+ L+FEGQTK+KLG+P ARPIV++IVSE+L FF
Sbjct: 307 LKEKDKNLEGSDVREGLSAVISVRIPEELLEFEGQTKEKLGTPEARPIVDAIVSEQLGFF 366
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L+ENGE A LVRKAI AR+AR AARKARD+SR GK+ KK + +LSGKLTPAQSKN+KKN
Sbjct: 367 LMENGEFAQQLVRKAINAREARVAARKARDESRTGKRKKKQERILSGKLTPAQSKNSKKN 426
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
EL+LVEGDSAGGSAKQGR+RKFQAILPLRGKVLNTEKAK+ DI+KNEEINT++YTIGAGV
Sbjct: 427 ELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGV 486
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
G +FN++D NYDK+IIMTDADTDGAHIQTLLLTFFY+YMRP+++AG +YIALPPLYK+ K
Sbjct: 487 GTEFNVQDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQK 546
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G K KIAYAWTD ELE + ++ G+G LQR+KGLGEMNA+QLWETTM+PETRTL+RV
Sbjct: 547 GLNKKVKIAYAWTDEELESVSKQMGRGFSLQRFKGLGEMNADQLWETTMNPETRTLVRVR 606
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
IDD AERRV+ LMGDK PRR+WIE NV FTLEE+
Sbjct: 607 IDDDTLAERRVTTLMGDKVEPRRKWIESNVAFTLEED 643
>ref|NP_389691.2| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
str. 168]
sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
gb|AAB81614.1| ParE [Bacillus subtilis]
emb|CAB13692.2| subunit of DNA topoisomerase IV [Bacillus subtilis subsp. subtilis
str. 168]
Length = 655
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/638 (68%), Positives = 531/638 (83%), Gaps = 4/638 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
+YN+DAIQVLEGL+AVRKRPGMYIGSTDA GLHHL++EIVDN+VDE L+G GD I V I+
Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KD S+SV D GRGMPTG H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNA
Sbjct: 68 KDNSISVQDRGRGMPTGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNA 127
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WL V I RDG VY+QRFENGGKPVT+L+K+G K+GT+ F PD +FST +
Sbjct: 128 LSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKT--KKTGTLTHFKPDPTMFSTTTYN 185
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
F T+SERL+ESAFLLK +K+ L D R D E F+YENG++ FV YLNE+K+ L+ V+
Sbjct: 186 FETLSERLRESAFLLKGLKIELIDERNDQR--EVFYYENGIEAFVAYLNEEKDVLSEVVS 243
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG+ +V+ A Q+NDG+S+NILSFVNNVRTKDGG+HE+G K+A+T+A N+YARK L
Sbjct: 244 FEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVAL 303
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNLEG+D REGLSA++S+ +PE+ LQFEGQTK KLG+ AR V++IVSE+L +F
Sbjct: 304 LKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYF 363
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L EN + A+ LV+KAIKA AREAARKAR+++R+GKK KK + LSGKLTPA S+N KN
Sbjct: 364 LEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKN 423
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ADI KNEEINT+++ IG GV
Sbjct: 424 ELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV 483
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GADF+++DINYDKIIIMTDADTDGAHIQ LLLTFFYRYM+PL+E G V+IALPPLYK+SK
Sbjct: 484 GADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSK 543
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G GK E I YAW+D E+ D+ ++ GKG +QRYKGLGEMNA+QLWETTM+PE+RTL+RV
Sbjct: 544 GSGKKEIIEYAWSDEEMGDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVK 603
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
IDD AR ERRV+ LMGDK PRR+WIE NV F L+E +
Sbjct: 604 IDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEES 641
>ref|YP_147604.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426]
dbj|BAD76036.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426]
Length = 645
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/635 (68%), Positives = 534/635 (84%), Gaps = 4/635 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDEAL+G+G+ I V I+K
Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYIFVQIHK 68
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S++V D GRGMP G H +G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 69 DNSITVLDEGRGMPVGMHKLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 128
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WL V I RDG +YRQRFE+GGKPVTTL+K+GT +K+GT++ F PD IFST F +
Sbjct: 129 SEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTT--NKTGTIIQFKPDPTIFSTTVFDY 186
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T+SERL+ESAFLLK +K+ L D R + E FHYENG++ FV YLNE+K+ L PV+Y
Sbjct: 187 ETLSERLRESAFLLKGLKIELVDER--TGMREVFHYENGIEAFVAYLNEEKDVLHPVVYF 244
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ +VE A Q++DG+S+N+LSFVNNVRTKDGG+HE G K+A+T+ N+YAR+ LL
Sbjct: 245 AGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVGLL 304
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNLEG+D REGLSAV+S+ +PE LQFEGQTK KLG+ AR V+++VSE+L +FL
Sbjct: 305 KEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLMYFL 364
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN +V++ L++KAI+A AREAARKAR+++R+GKK K + LLSGKLTPAQ +N +KNE
Sbjct: 365 QENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQKNE 424
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR+FQA+LPLRGKV+NTEKAK+ DILKNEEINT+++ IG GVG
Sbjct: 425 LYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHAIGGGVG 484
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
ADF+L+D+NYDK+IIMTDADTDGAHIQ LLLTFFYRYMRPL+EAG VYIALPPLYK+SK
Sbjct: 485 ADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKISKK 544
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
GK E + YAWTD +L+++ ++ G+G +QRYKGLGEMNA+QLWETTM+P+TRTLIRV I
Sbjct: 545 SGKNEIVEYAWTDEQLKEITKKMGRGYTIQRYKGLGEMNADQLWETTMNPQTRTLIRVRI 604
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
+D ARAERRV+ LMGDK PRR+WIE +V F LEE
Sbjct: 605 EDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEE 639
>ref|NP_470661.1| DNA topoisomerase IV subunit B [Listeria innocua Clip11262]
emb|CAC96556.1| parE [Listeria innocua]
Length = 655
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/640 (68%), Positives = 535/640 (83%), Gaps = 7/640 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N YNDD+IQVLEGL+AVRKRP MYIGSTD GLHHL++EIVDN+VDE L+GFG I V +
Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQ-GGYKTSGGLHGVGSSVV 128
+ DGSVSV+D GRGMP G H G TV+VI T+LHAGGKFGQ GGYKTSGGLHGVGSSVV
Sbjct: 64 HDDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVV 123
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSK-SGTVVTFMPDDKIFSTI 187
NALS WL V I RDG+ Y+Q+F++GGKP TLKK+G KSK +GT + F PD IF T
Sbjct: 124 NALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIG---KSKATGTTIRFKPDPAIFPTT 180
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F + T+SERL+ESAFLLK + + L D R + E FH+E GV++FVEY+NE K+ L P
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDVLHP 238
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
V+ EG++ +VE+A Q+NDG+S+NILSFVNNVRT+ GSHE+G+K+A+T+ NDYAR+
Sbjct: 239 VVSFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARR 298
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
NLLKEKDKNLEGSD REGLSAVLSI VPE+ LQFEGQTK+KLG+ AR V+++V+E L
Sbjct: 299 VNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHL 358
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN E +S LV+KA+KAR+AREAARKAR+++RNGKK K+ + LLSGKLTPAQS+N
Sbjct: 359 AYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNP 418
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
KNELYLVEGDSAGGSAKQGRDR+FQAILPLRGKV+NTEKAK+ DILKNEEI+T+++T+G
Sbjct: 419 NKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVG 478
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
AGVG +F++ED NYDK++IMTDADTDGAHIQ LLLTFFYRYMRPLVEAG V+IALPPLYK
Sbjct: 479 AGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYK 538
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+S+G GK E I YAWTD EL+ ++ GKG ++QRYKGLGEMNA+QLWETTM+P+TRTLI
Sbjct: 539 VSRGSGKKEVIEYAWTDEELDAAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLI 598
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
RV +DD ARAERRV+ LMGDK PRRQWIE +V+F++E+N
Sbjct: 599 RVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDN 638
>ref|YP_849500.1| DNA topoisomerase IV subunit B [Listeria welshimeri serovar 6b str.
SLCC5334]
emb|CAK20721.1| parE [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 655
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/640 (68%), Positives = 534/640 (83%), Gaps = 7/640 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N YNDD+IQVLEGL+AVRKRP MYIGSTD GLHHL++EIVDN+VDE L+GFG I V +
Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQ-GGYKTSGGLHGVGSSVV 128
+ DGSVSV+D GRGMP G H G TV+VI T+LHAGGKFGQ GGYKTSGGLHGVGSSVV
Sbjct: 64 HDDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVV 123
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSK-SGTVVTFMPDDKIFSTI 187
NALS WL V I RDG+ Y+Q+F++GGKP TLKK+G KSK +GT + F PD IF T
Sbjct: 124 NALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIG---KSKATGTTIRFKPDPTIFPTT 180
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F + T+SERL+ESAFLLK + + L D R + E FH+E GV++FVEY+NE K+ L P
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDVLHP 238
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
V EG++ +VE+A Q+NDG+S+NILSFVNNVRT+ GSHE+G+K+A+T+ NDYAR+
Sbjct: 239 VASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARR 298
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
NLLKEKDKNLEGSD REGLSAVLSI VPE+ LQFEGQTK+KLG+ AR V+++V+E L
Sbjct: 299 VNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHL 358
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN E +S LV+KA+KAR+AREAARKAR+++RNGKK K+ + LLSGKLTPAQS+N
Sbjct: 359 AYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNP 418
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
KNELYLVEGDSAGGSAKQGRDR+FQAILPLRGKV+NTEKAK+ DILKNEEI+T+++T+G
Sbjct: 419 NKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVG 478
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
AGVG +F++ED NYDK++IMTDADTDGAHIQ LLLTFFYRYMRPLVEAG V+IALPPLYK
Sbjct: 479 AGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYK 538
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+S+G GK E I YAWTD EL+ ++ GKG ++QRYKGLGEMNA+QLWETTM+P+TRTLI
Sbjct: 539 VSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLI 598
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
RV +DD ARAERRV+ LMGDK PRRQWIE +V+F++E+N
Sbjct: 599 RVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDN 638
>ref|NP_692614.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831]
dbj|BAC13649.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831]
Length = 651
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/637 (67%), Positives = 534/637 (83%), Gaps = 4/637 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
Y+D +IQVLEGLDAVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL+G+G +I+V I+
Sbjct: 6 QYSDSSIQVLEGLDAVRKRPGMYIGSTDIRGLHHLVYEIVDNAVDEALAGYGKEIQVTIH 65
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KD SVSV DSGRGMPTG H G PT +VIFT+LHAGGKFGQG YKTSGGLHGVG+SVVNA
Sbjct: 66 KDESVSVKDSGRGMPTGMHQTGKPTTEVIFTVLHAGGKFGQGSYKTSGGLHGVGASVVNA 125
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLEV RDG Y+QRFENGG+PVTTL+K G P K G+V+ F PD IFSTI +
Sbjct: 126 LSEWLEVTTFRDGFQYQQRFENGGRPVTTLEKKG--PTRKKGSVIRFKPDPTIFSTIVYN 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+ TISERL+ESAFLLK +K+ L D R D + + Y G++ FV+YLNE+K+ L +++
Sbjct: 184 YETISERLRESAFLLKGLKIELIDERHDKHDV--YEYPEGLKSFVDYLNEEKDALHSIVF 241
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
MEG+ Q+ +VE A Q+NDGF++N+LSFVN+VRT+DGG+HE+G ++AIT+ +NDYAR+ L
Sbjct: 242 MEGEQQEIEVEFAFQFNDGFAENMLSFVNHVRTRDGGTHESGARTAITRTVNDYARRQGL 301
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEK+KNLEG+D REGL+ V+S+ VPE LQFEGQTK KLG+ AR V+S++SE L +F
Sbjct: 302 LKEKEKNLEGTDIREGLTGVVSVRVPEDKLQFEGQTKGKLGTTEARSAVDSVISEHLNYF 361
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L EN +++ L++K+IKA++AREAARKAR+++R GKK K+ LLSGKLTPAQS+N +KN
Sbjct: 362 LEENPDISGMLIKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKLTPAQSRNPEKN 421
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ D+ KNEEI+T+++TIGAGV
Sbjct: 422 ELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEISTIIHTIGAGV 481
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
G DFNL+D+ YDKIIIMTDADTDGAHIQ LLLTFFYRYMRPLVEAG ++IALPPL+K+SK
Sbjct: 482 GGDFNLDDVQYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIFIALPPLFKVSK 541
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
GKGK EK+ YAW + EL+ +E +G +QRYKGLGEMNA+QLWETTM+P +RTLIRV+
Sbjct: 542 GKGKQEKLRYAWDEQELKVAIQELKQGYTIQRYKGLGEMNADQLWETTMNPSSRTLIRVS 601
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
IDD+ARAERRV+ LMGDK PRR+WIE +VKF LEE+
Sbjct: 602 IDDIARAERRVTTLMGDKVEPRRKWIEGHVKFGLEED 638
>ref|NP_464811.1| DNA topoisomerase IV subunit B [Listeria monocytogenes EGD-e]
ref|ZP_00234807.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a
F6854]
ref|ZP_01929897.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N3-165]
ref|ZP_01935278.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes J0161]
ref|ZP_01938056.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes J2818]
ref|ZP_01940473.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes 10403S]
gb|AAM48488.1|AF084044_1 DNA topoisomerase IV subunit B [Listeria monocytogenes]
emb|CAC99364.1| parE [Listeria monocytogenes]
gb|EAL05343.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a
F6854]
gb|EBA20259.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes J0161]
gb|EBA23733.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes 10403S]
gb|EBA26022.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes J2818]
gb|EBA32015.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N3-165]
Length = 655
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/640 (68%), Positives = 535/640 (83%), Gaps = 7/640 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N YNDD+IQVLEGL+AVRKRP MYIGSTD GLHHL++EIVDN+VDE L+GFG I V +
Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQ-GGYKTSGGLHGVGSSVV 128
++DGSVSV+D GRGMP G H G TV+VI T+LHAGGKFGQ GGYKTSGGLHGVGSSVV
Sbjct: 64 HEDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVV 123
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSK-SGTVVTFMPDDKIFSTI 187
NALS WL V I RDG+ Y+Q+F++GGKP TLKK+G KSK +GT + F PD IF T
Sbjct: 124 NALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIG---KSKATGTTIRFKPDPAIFPTT 180
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F + T+SERL+ESAFLLK + + L D R + E FH+E GV++FVEY+NE K+ L P
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDVLHP 238
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
V EG++ +VE+A Q+NDG+S+NILSFVNNVRT+ GSHE+G+K+A+T+ NDYAR+
Sbjct: 239 VASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARR 298
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
NLLKEKDKNLEGSD REGLSAVLSI VPE+ LQFEGQTK+KLG+ AR V+++V+E L
Sbjct: 299 VNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHL 358
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN E +S LV+KA+KAR+AREAARKAR+++RNGKK K+ + LLSGKLTPAQS+N
Sbjct: 359 AYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNP 418
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
KNELYLVEGDSAGGSAKQGRDR+FQAILPLRGKV+NTEKAK+ DILKNEEI+T+++T+G
Sbjct: 419 NKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVG 478
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
AGVG +F++ED NYDK++IMTDADTDGAHIQ LLLTFFYRYMRPLVEAG V+IALPPLYK
Sbjct: 479 AGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYK 538
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+S+G GK E I YAWTD EL+ ++ GKG ++QRYKGLGEMNA+QLWETTM+P+TRTLI
Sbjct: 539 VSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLI 598
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
RV +DD ARAERRV+ LMGDK PRRQWIE +V+F++E++
Sbjct: 599 RVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDS 638
>ref|YP_001698670.1| DNA topoisomerase 4 subunit B [Lysinibacillus sphaericus C3-41]
gb|ACA40540.1| DNA topoisomerase 4 subunit B [Lysinibacillus sphaericus C3-41]
Length = 667
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/649 (68%), Positives = 540/649 (83%), Gaps = 8/649 (1%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
+LT K+ + + YNDDAIQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL+G
Sbjct: 9 LLTNKQ-SPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAG 67
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
FG I V I+KD S+SV D GRGMPTG H MG PT ++IFT+LHAGGKFGQGGYKTSGGL
Sbjct: 68 FGSHIIVKIHKDQSISVRDFGRGMPTGMHKMGKPTPEIIFTVLHAGGKFGQGGYKTSGGL 127
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALS +LEV I RDG YRQRFE+GG PVTTL+++G ++GT+V F+PD
Sbjct: 128 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGHT--KQTGTLVHFLPD 185
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLR--GDDPIIEEFHYENGVQDFVEYL 238
+ IFS F ++T++ERL+ESAFLLK +K+ L D R G + + F YENG++ FV YL
Sbjct: 186 ETIFSVTKFNYDTLAERLRESAFLLKGLKIELIDEREEGKNDV---FFYENGIEAFVAYL 242
Query: 239 NEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
NE+K+ L PV Y+EG D +VE A QYNDG+S+ ILSFVNNVRT+DGG+HETG K+A+T
Sbjct: 243 NEEKDVLHPVKYVEGIQDDIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALT 302
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ N+YARK LLK+KDKNLEG+D REGL+A++S+ +PE LQFEGQTK KLG+ AR
Sbjct: 303 RVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSA 362
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
V+S+VSE++ + L EN E+++ LVRKAI+A+ REAARKAR+D+RNGKKNKK +LSGK
Sbjct: 363 VDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGK 422
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
LTPAQS+NA KNELYLVEGDSAGGSAKQGRDR FQAILPLRGKV+NTEKAK+ DI+KNEE
Sbjct: 423 LTPAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEE 482
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I+T+++ IGAGVG DF +ED Y+K++IMTDADTDGAHIQ LLLTFFYRYMRPL+EAG V
Sbjct: 483 ISTIIHAIGAGVGTDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKV 542
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETT 598
+IALPPLYK+SKG GK E I YAWT+ +L+ ++ GKG ILQRYKGLGEMNA+QLW+TT
Sbjct: 543 FIALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGKGYILQRYKGLGEMNADQLWDTT 602
Query: 599 MDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
M+P+TRTLIRVTI+D ARAERRV+ LMGDK PRR+WIE NV F +E++
Sbjct: 603 MNPDTRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDD 651
>ref|YP_013902.1| DNA topoisomerase IV subunit B [Listeria monocytogenes str. 4b
F2365]
ref|ZP_01943758.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HPB2262]
ref|ZP_02320144.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-064]
gb|AAT04079.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 4b
F2365]
gb|EBA37110.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HPB2262]
Length = 655
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/640 (68%), Positives = 534/640 (83%), Gaps = 7/640 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N YNDD+IQVLEGL+AVRKRP MYIGSTD GLHHL++EIVDN+VDE L+GFG I V +
Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQ-GGYKTSGGLHGVGSSVV 128
+ DGSVSV+D GRGMP G H G TV+VI T+LHAGGKFGQ GGYKTSGGLHGVGSSVV
Sbjct: 64 HVDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVV 123
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSK-SGTVVTFMPDDKIFSTI 187
NALS WL V I RDG+ Y+Q+F++GGKP TLKK+G KSK +GT + F PD IF T
Sbjct: 124 NALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIG---KSKATGTTIRFKPDPAIFPTT 180
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F + T+SERL+ESAFLLK + + L D R + E FH+E GV++FVEY+NE K+ L P
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDVLHP 238
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
V EG++ +VE+A Q+NDG+S+NILSFVNNVRT+ GSHE+G+K+A+T+ NDYAR+
Sbjct: 239 VASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARR 298
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
NLLKEKDKNLEGSD REGLSAVLSI VPE+ LQFEGQTK+KLG+ AR V+++V+E L
Sbjct: 299 VNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHL 358
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN E +S LV+KA+KAR+AREAARKAR+++RNGKK K+ + LLSGKLTPAQS+N
Sbjct: 359 AYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNP 418
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
KNELYLVEGDSAGGSAKQGRDR+FQAILPLRGKV+NTEKAK+ DILKNEEI+T+++T+G
Sbjct: 419 NKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVG 478
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
AGVG +F++ED NYDK++IMTDADTDGAHIQ LLLTFFYRYMRPLVEAG V+IALPPLYK
Sbjct: 479 AGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYK 538
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+S+G GK E I YAWTD EL+ ++ GKG ++QRYKGLGEMNA+QLWETTM+P+TRTLI
Sbjct: 539 VSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLI 598
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
RV +DD ARAERRV+ LMGDK PRRQWIE +V+F++E++
Sbjct: 599 RVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDS 638
>ref|ZP_01724598.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905]
gb|EAZ84960.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905]
Length = 658
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/636 (68%), Positives = 533/636 (83%), Gaps = 3/636 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YNDDAIQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL+GFG I V I+K
Sbjct: 10 YNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGSHIIVKIHK 69
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S+SV D GRGMPTG H MG PT ++IFT+LHAGGKFGQGGYKTSGGLHGVGSSVVNAL
Sbjct: 70 DQSISVRDFGRGMPTGMHKMGKPTPEIIFTVLHAGGKFGQGGYKTSGGLHGVGSSVVNAL 129
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S +LEV I RDG YRQRFE+GG PVTTL+++G ++GT+V F+PD+ IFS + +
Sbjct: 130 STFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGQT--KQTGTLVHFLPDETIFSVTKYNY 187
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
+T++ERL+ESAFLLK +K+ L D R ++ + F YENG++ FV YLNE+K+ L PV Y+
Sbjct: 188 DTLAERLRESAFLLKGLKIELIDER-EEGKNDMFFYENGIEAFVAYLNEEKDVLHPVKYV 246
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
EG D +VE A QYNDG+S+ ILSFVNNVRT+DGG+HETG K+A+T+ N+YARK LL
Sbjct: 247 EGIQDDIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRVFNEYARKIGLL 306
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
K+KDKNLEG+D REGL+A++S+ +PE LQFEGQTK KLG+ AR V+S+VSE++ + L
Sbjct: 307 KDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDSVVSEQILYVL 366
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN E+++ LVRKAI+A+ REAARKAR+D+RNGKKNKK +LSGKLTPAQS+NA +NE
Sbjct: 367 EENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRNAARNE 426
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDR FQAILPLRGKV+NTEKAK+ DI+KNEEI+T+++ IGAGVG
Sbjct: 427 LYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVG 486
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
DF +ED Y+K++IMTDADTDGAHIQ LLLTFFYRYMRPL+EAG V+IALPPLYK+SKG
Sbjct: 487 TDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYKVSKG 546
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
GK E I YAWT+ +L+ ++ GKG ILQRYKGLGEMNA+QLW+TTM+P+TRTLIRVTI
Sbjct: 547 TGKKEVIEYAWTENDLQKAIKQVGKGYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVTI 606
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
+D ARAERRV+ LMGDK PRR+WIE NV F +E++
Sbjct: 607 EDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDD 642
>ref|ZP_02170423.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens
MLS10]
gb|EDP82806.1| DNA polymerase III, epsilon subunit [Bacillus selenitireducens
MLS10]
Length = 656
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/637 (68%), Positives = 526/637 (82%), Gaps = 2/637 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+GFG++I V I+K
Sbjct: 8 YNDDAIQVLEGLDAVRKRPGMYIGSTDHRGLHHLVFEIVDNSVDEILAGFGNEITVTIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D SVS+ DSGRG PTG H G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DQSVSIQDSGRGFPTGMHRSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WLEV I RDG + +QRFENGGKP TTL+KVG ++GT V F PD+ IF +I F +
Sbjct: 128 SEWLEVTIYRDGVISQQRFENGGKPATTLEKVGKT--KRTGTTVHFKPDEAIFGSITFHY 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
+T++ERL+E+AFL+K VK+ L D RGD+P + F ++ G+ FV+YLNE+K+ L PVI
Sbjct: 186 DTLAERLREAAFLIKGVKIELIDERGDEPERDTFQFDTGLVAFVDYLNEEKDILHPVIQF 245
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
EG + +V++A QYNDGF++N+LSFVNNVRTKDGG+HE G K+AIT+ +N++ARK LL
Sbjct: 246 EGVHDEIEVDIAFQYNDGFTENMLSFVNNVRTKDGGTHELGAKAAITRIINEHARKLALL 305
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNL+GSD REG + ++S+ VPE+ LQFEGQTK KLG+ AR V+ ++S KL FFL
Sbjct: 306 KEKDKNLDGSDIREGFTGIISVRVPEEKLQFEGQTKAKLGTAEARSAVDQVISGKLAFFL 365
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN E + L++KA+KA AREAARKAR+D+RNGKKNK+ +LSGKLTPAQS+N KNE
Sbjct: 366 EENPEFSHMLIKKAVKASQAREAARKAREDARNGKKNKRKDAMLSGKLTPAQSRNPNKNE 425
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ADI+KNEEI T++Y IG VG
Sbjct: 426 LYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRTIIYAIGGDVG 485
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
DF+LE+INYDKI+IMTDADTDGAHIQ LLLTFFYRYMRPLVEAG +YIALPPLYK+S+G
Sbjct: 486 PDFDLENINYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRIYIALPPLYKVSRG 545
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
GK E + YAW + L+ + GKG ILQRYKGLGEM+A QLWETTM+PE+RTL+RVTI
Sbjct: 546 SGKKEIVEYAWDENGLQGAIDQVGKGYILQRYKGLGEMDATQLWETTMNPESRTLVRVTI 605
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
+D+ARAER VS LMGDK PRR+WIE NV F L E+T
Sbjct: 606 EDVARAERHVSTLMGDKVEPRRKWIERNVAFGLNEDT 642
>ref|NP_785393.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum WCFS1]
emb|CAD64242.1| topoisomerase IV, subunit B [Lactobacillus plantarum WCFS1]
Length = 668
Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/636 (69%), Positives = 525/636 (82%), Gaps = 1/636 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+D +IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL+G+G +I V+I+
Sbjct: 8 YDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINVIIHA 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S++V D GRGMP G HA GIPT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSITVVDHGRGMPVGMHASGIPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S+ L V I RDG Y + F++GG PV TL+K G K +GT +TF PD IF+T + F
Sbjct: 128 SSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKP-TGTTMTFKPDASIFTTTVYNF 186
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T++ERL+ESAFLLK VK++LTD R + FHYE+G++ FV YLNEDK+TL +++
Sbjct: 187 QTLAERLRESAFLLKGVKITLTDERENQQQELVFHYEDGIKAFVSYLNEDKDTLGDIMFF 246
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
+G + +VEVA QYNDG+S+N+LSFVNNVRT DGG+HE G +SA TKA N+YARK LL
Sbjct: 247 DGTKEGVEVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEVGFRSAWTKAFNEYARKVGLL 306
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
K+KDKNLEGSD REGLSAV+S+ VPE LQFEGQTK+KLG+P AR IV++IVSE+L FFL
Sbjct: 307 KDKDKNLEGSDVREGLSAVISLRVPENLLQFEGQTKEKLGTPEARTIVDNIVSEQLQFFL 366
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
+ENGE A L+RK+ KAR AREAARKARD+SRNGK+ K + LLSGKLTPAQSKNAKKNE
Sbjct: 367 MENGEFAQMLIRKSTKARQAREAARKARDESRNGKRRHKQERLLSGKLTPAQSKNAKKNE 426
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
L+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ADI+KNEEINTM+YTIGAGVG
Sbjct: 427 LFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVKNEEINTMIYTIGAGVG 486
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+F+++ NYDKIIIMTDADTDGAHIQ LLLTFFY+YMRP+++AG +YIALPPLY++ K
Sbjct: 487 PEFDIKASNYDKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDAGKIYIALPPLYRLQKK 546
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
+ K + YAWTD EL + FGKG LQRYKGLGEMNA QLWETTMDPE RTL+RV I
Sbjct: 547 QNKQLRTEYAWTDEELTLKTKSFGKGYALQRYKGLGEMNAEQLWETTMDPEKRTLVRVRI 606
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
DD A AE+RV+ LMGDK PRR+WIE NV F L+E+
Sbjct: 607 DDAALAEKRVTTLMGDKVEPRRKWIESNVHFNLDED 642
>ref|YP_001421384.1| ParE [Bacillus amyloliquefaciens FZB42]
gb|ABS74153.1| ParE [Bacillus amyloliquefaciens FZB42]
Length = 655
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/638 (68%), Positives = 532/638 (83%), Gaps = 4/638 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
+YN+DAIQVLEGL+AVRKRPGMYIGSTDA GLHHL++EIVDN+VDE L+G+GD I V I+
Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVTIH 67
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KD S+SV D GRGMPTG H +G PT +VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNA
Sbjct: 68 KDNSISVQDRGRGMPTGMHKLGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNA 127
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WL V I RDG VY+QRFENGGKPVT+L+K+GT K+GT+ F PD +FS +
Sbjct: 128 LSEWLTVTIERDGYVYKQRFENGGKPVTSLEKIGTT--KKTGTLTHFKPDPSMFSATVYN 185
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
F+T+SERL+ESAFLLK +K+ L D R + + E F+YENG++ FV YLNE+K+ L V+
Sbjct: 186 FDTLSERLRESAFLLKGLKIELIDER--NGVKEVFYYENGIEAFVAYLNEEKDALCEVVS 243
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG+ D +V+ A Q+NDG+S+N+LSFVNNVRTKDGG+HE+G K+A+T+A N+YARK L
Sbjct: 244 FEGEHHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVAL 303
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNLEG+D REGLSA++S+ +PE+ LQFEGQTK KLG+ AR ++++SE L +F
Sbjct: 304 LKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAADAVISENLAYF 363
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L EN + A+ LV+KAIKA AREAARKAR+++R+GKK KK + LSGKLTPA S+N KN
Sbjct: 364 LEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKN 423
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ADI KNEEINT+++ IG GV
Sbjct: 424 ELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV 483
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GADF ++DINYDKIIIMTDADTDGAHIQ LLLTFFYRYM+PL+E G V+IALPPLYK+SK
Sbjct: 484 GADFEIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSK 543
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G GK E I YAW+D E++ + ++ GKG +QRYKGLGEMNA+QLWETTM+PE+RTL+RV
Sbjct: 544 GSGKKEIIEYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVK 603
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
IDD AR ERRV+ LMGDK PRR+WIE NV F L+E +
Sbjct: 604 IDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEES 641
>ref|NP_965026.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533]
gb|AAS08992.1| topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533]
Length = 652
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/646 (67%), Positives = 528/646 (81%), Gaps = 3/646 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ K T ++Y+D +IQ+L GL+AVRKRPGMYIGSTD GL+HLI+EIVDN+VDEA++G+
Sbjct: 1 MAKANKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
G +I V I+KD SV+V D GRGMPTG H GIPT++VI T+LHAGGKF + Y+TSGGLH
Sbjct: 61 GKEINVTIHKDNSVTVQDFGRGMPTGMHESGIPTIEVILTVLHAGGKFTEKNYQTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS++L+V + RDG Y + FENGG P+ TLK +G K K+GT +TF PD
Sbjct: 121 GVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKT-KDKNGTTITFKPDP 179
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST + + TI ER++ESAFLLK VK +LTD R + +EF YE+G++ FV YLNED
Sbjct: 180 TIFSTTTYNYETIQERIRESAFLLKGVKFTLTDER-EPEHHDEFLYEDGIKSFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
K+T+ V Y G+ +VE + QYNDG+S+N +SFVNNVRT DGGSHE G +S TKA
Sbjct: 239 KDTMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAF 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYA+K LLK KDK LEGSDYREGLSAVLS+ +PE+ L+FEGQTK KLG+P AR +V+S
Sbjct: 299 NDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDS 358
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV E+L+++L+ENGE A LV+KA KARDAREAA+KARD+SR+GKK +K K +LSGKLTP
Sbjct: 359 IVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK-KEILSGKLTP 417
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQS+N KKNEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT+KAK+ DI KNEEINT
Sbjct: 418 AQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINT 477
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M++TIGAGVG+DF ++D NYDKIIIMTDADTDGAHIQ LLLTFFYRYMRP+VEAG VYIA
Sbjct: 478 MIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIA 537
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYK+ KG G KI YAWTD EL + ++ GKG LQR+KGLGEMNA+QLWETTM+P
Sbjct: 538 LPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNP 597
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
ETRTLIRV IDD AE+RV+ LMGDK APRR+WI++NVKF + E+
Sbjct: 598 ETRTLIRVKIDDAQLAEKRVTTLMGDKVAPRRKWIDENVKFRMGED 643
>ref|YP_001486947.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Bacillus pumilus
SAFR-032]
gb|ABV62387.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Bacillus pumilus
SAFR-032]
Length = 655
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/648 (67%), Positives = 540/648 (83%), Gaps = 7/648 (1%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M+ K+++ +YNDD+IQVLEGL+AVRKRPGMYIGSTD+ GLHHL++EIVDN+VDE L+G
Sbjct: 1 MVKKQQV---DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAG 57
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
GD I V I+KD S+SV D GRGMPTG H +G PT ++I T+LHAGGKFGQGGYKTSGGL
Sbjct: 58 HGDHIVVKIHKDNSISVQDKGRGMPTGMHKLGKPTPEIILTVLHAGGKFGQGGYKTSGGL 117
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS WL V I RDG +Y QRFENGGKPVT+L+KVG K+GT++ F PD
Sbjct: 118 HGVGASVVNALSEWLTVTIERDGYIYHQRFENGGKPVTSLEKVGKT--KKTGTLIHFKPD 175
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
+FS + F+T+SERL+ESAFLLK +K+ L D R D + E F+YE G++ FV YLNE
Sbjct: 176 RSMFSVTTYNFDTLSERLRESAFLLKGLKIELIDERHD--VQETFYYETGIEAFVAYLNE 233
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
+K+ L+ V+ EG+ Q +V+ A Q+NDG+S+NILSFVNNVRTKDGG+HE+G K+A+T+A
Sbjct: 234 EKDVLSEVVSFEGEHQSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
N+YARK LLKEKDKNLEG+D REGLSA++S+ +PE+ LQFEGQTK KLG+ AR V+
Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
+++SEKL +FL EN E A+ LVRKAIKA+ AREAAR+AR+++R+GKK KK + LSGKLT
Sbjct: 354 AVISEKLAYFLEENRETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKLT 413
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQS+N +NELYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ADI KNEEIN
Sbjct: 414 PAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
T+++ IG GVG DFN+EDINYDKI+IMTDADTDGAHIQ LLLTFFYRYM+PL+E G V+I
Sbjct: 474 TIIHAIGGGVGVDFNVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 533
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYK+SKG GK E I YAW+D E++D+ ++ GKG +QRYKGLGEMNA+QLWETTM+
Sbjct: 534 ALPPLYKVSKGSGKKEVIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMN 593
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
PE+RTL+RV IDD AR ERRV+ LMGDK PRR+WIE NV F L+E +
Sbjct: 594 PESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEES 641
>ref|YP_814813.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323]
gb|ABJ60375.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323]
Length = 661
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/646 (67%), Positives = 528/646 (81%), Gaps = 3/646 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
L K T ++Y+D +IQ+L GL+AVRKRPGMYIGSTD GL+ L++EIVDN+VDEA++G+
Sbjct: 10 LAKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGY 69
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
G +I V I+KD S++V D GRGMPTG HA GIPT++VI T+LHAGGKF + Y+TSGGLH
Sbjct: 70 GKEINVTIHKDNSITVQDFGRGMPTGMHASGIPTIEVILTVLHAGGKFTEKNYQTSGGLH 129
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS++L+V + RDG Y + FENGG P+ TLK +G K K+GT +TF PD
Sbjct: 130 GVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKT-KDKNGTTITFKPDA 188
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST + + TI ER++ESAFLLK VK +LTD R + ++F YE+G++ FV YLNED
Sbjct: 189 TIFSTTTYNYETIQERIRESAFLLKGVKFTLTDER-EPEHHDKFLYEDGIKSFVSYLNED 247
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
K+T+ V Y G+ +VE A QYNDG+S+N +SFVNNVRT DGGSHE G +S TKA
Sbjct: 248 KDTMGDVFYFSGKQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAF 307
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYA+K LLK KDK LEGSDYREGLSAVLS+ +PE+ L+FEGQTK KLG+P AR +V+S
Sbjct: 308 NDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDS 367
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
IV E+L+++L+ENGE A LV+KA KARDAREAA+KARD+SR+GKK +K K +LSGKLTP
Sbjct: 368 IVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK-KEILSGKLTP 426
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
AQS+N KKNEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT+KAK+ DI KNEEINT
Sbjct: 427 AQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINT 486
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M++TIGAGVG+DF ++D NYDKIIIMTDADTDGAHIQ LLLTFFYRYMRP+VEAG VYIA
Sbjct: 487 MIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIA 546
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
LPPLYK+ KG G KI YAWTD EL + ++ GKG LQR+KGLGEMNA+QLWETTM+P
Sbjct: 547 LPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNP 606
Query: 602 ETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
ETRTLIRV IDD AE+RV+ LMGDK APRR+WI++NVKF + E+
Sbjct: 607 ETRTLIRVKIDDAQLAEKRVTTLMGDKVAPRRKWIDENVKFRMGED 652
>ref|YP_175485.1| DNA topoisomerase IV subunit B [Bacillus clausii KSM-K16]
dbj|BAD64524.1| DNA topoisomerase IIA subunit B [Bacillus clausii KSM-K16]
Length = 656
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/637 (67%), Positives = 521/637 (81%), Gaps = 2/637 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN+DAIQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL G+G+ IKV I+K
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDVRGLHHLVYEIVDNAVDEALGGYGNTIKVTIHK 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D SVS+ D GRGMP G H G PT +VIFT+LHAGGKFGQGGY TSGGLHGVG+SVVNAL
Sbjct: 68 DQSVSIEDEGRGMPVGMHRSGKPTPEVIFTVLHAGGKFGQGGYATSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S WLEVEI RDG Y QRFE GGKPVTTL+K G SGT V F PD+ IFSTI F
Sbjct: 128 SEWLEVEIKRDGYRYTQRFEQGGKPVTTLEKKGKT--RASGTTVRFKPDEGIFSTIQFNS 185
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
++ERL+E+AFLLK V++ LTD R + + E F ++ G++ FV+YLNE KE L PV+
Sbjct: 186 EILAERLREAAFLLKGVQIELTDKRPEKELHEVFKFDTGLEAFVDYLNEGKEALHPVVSF 245
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G D Q++ + Q++D +++N+LSFVNNVRT+DGG+HE G K+A+T+ MN++ARK +L
Sbjct: 246 SGSANDIQMDFSFQFHDAYTENVLSFVNNVRTRDGGTHELGAKTAMTRIMNEHARKIGVL 305
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNL+GSD REG +AV+S+ VPE LQFEGQTK KLG+P AR V++IVSE L++FL
Sbjct: 306 KEKDKNLDGSDIREGFTAVVSVRVPEAKLQFEGQTKSKLGTPEARSAVDAIVSENLSYFL 365
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN VA+ L++KA+KA AREAARKAR+D+RNGKKNK+ LLSGKLTPAQS+N +NE
Sbjct: 366 EENPAVATMLLKKAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLTPAQSRNPARNE 425
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ DI+KNEEI T+++TIGAGVG
Sbjct: 426 LYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIRTIIHTIGAGVG 485
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
ADF+ D NYDK++IMTDADTDGAHIQ LLLTFFYRYM+PL++ G +YIALPPLYK+SKG
Sbjct: 486 ADFDSADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIYIALPPLYKVSKG 545
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
GK E++ YAW + EL+ ++ G+G+ +QRYKGLGEMNA QLWETTMDP TRTLIRV +
Sbjct: 546 SGKKEQVEYAWDENELQAALKKVGRGSTVQRYKGLGEMNATQLWETTMDPATRTLIRVRL 605
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
+D ARAE+ V+ LMGDK PRR+WIE +V F LEE+T
Sbjct: 606 EDAARAEKHVATLMGDKVEPRRKWIESHVAFGLEEDT 642
>ref|YP_794978.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367]
gb|ABJ63947.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367]
Length = 655
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/637 (67%), Positives = 528/637 (82%), Gaps = 3/637 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+D +IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL+G+G +I V I++
Sbjct: 8 YDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINVTIHQ 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S++V D GRGMP G HA GIPT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNAL
Sbjct: 68 DNSITVVDHGRGMPVGMHASGIPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S+ L V I RDG Y+++F GG P TLKK+G ++ +GT + F PD +IF+T + F
Sbjct: 128 SSSLTVTIVRDGVRYQEKFAKGGHPQGTLKKLGNT-RAHNGTTIDFKPDSQIFTTTVYNF 186
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
T++ERL+ESAFLLK VK++LTD R EE+H+E+G+++FV YLNEDK+TL ++Y
Sbjct: 187 GTLAERLRESAFLLKGVKITLTDEREGQERTEEYHFESGIKEFVSYLNEDKDTLGDIMYF 246
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
+G +VEVA QYNDG+++N+LSFVNNVRTKDGGSHE G++S TKA N+YARK LL
Sbjct: 247 DGSKDGIEVEVAAQYNDGYTENLLSFVNNVRTKDGGSHEAGMRSGWTKAFNEYARKVGLL 306
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KE+DKNLEG+D REGLSAV+S+ VPE LQFEGQTK+KLG+P AR IV+SI+SE+L ++L
Sbjct: 307 KERDKNLEGTDVREGLSAVISLRVPEDLLQFEGQTKEKLGTPEARTIVDSIISEQLGYYL 366
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
+ENG+ L++K+ +AR AREAARKARD+SRNGK++KK + LLSGKLTPAQSKNA KNE
Sbjct: 367 MENGDFGKMLIKKSTQARQAREAARKARDESRNGKRHKKHERLLSGKLTPAQSKNAAKNE 426
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
L+LVEGDSAGGSAKQGR+RKFQAILPLRGKVLNTEKAK+ DI+KNEEI+TM+YTIGAGVG
Sbjct: 427 LFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMKNEEISTMIYTIGAGVG 486
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
+FN+ED NYDKIIIMTDAD DGAHIQ LLLTFFY+YMRP+++AG +YIALPPLY++ K
Sbjct: 487 TEFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDAGRIYIALPPLYRIQK- 545
Query: 552 KGKTEKIAYAWTDGEL-EDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
GK I YAWT+ EL E ++ G LQR+KGLGEM+A QLWETTMDP+ RTLIRV
Sbjct: 546 TGKKPTIEYAWTNDELNEKTKKIANHGYHLQRFKGLGEMDAEQLWETTMDPDNRTLIRVQ 605
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
IDD A AERRV+ LMGDK PRR+WIE NV+FTLE++
Sbjct: 606 IDDAALAERRVTTLMGDKVEPRRKWIESNVQFTLEDD 642
>ref|NP_764591.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis ATCC
12228]
ref|YP_188504.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis RP62A]
gb|AAO04633.1|AE016747_130 topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228]
gb|AAW54307.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis RP62A]
Length = 666
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/639 (67%), Positives = 533/639 (83%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++E+VDN+VDE L+G+GD I V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAITVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
N+DGS+S+ D+GRGMPTG HA G PT +VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NQDGSISIEDNGRGMPTGIHASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P T L K T K+GT VTF PD +IF ST
Sbjct: 127 ALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVK--TGKTKKTGTKVTFKPDSEIFKSTTT 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLK++K++LTDLR E +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ N+YAR+
Sbjct: 245 TTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK+KDKNL+G+D REGL+A++S+ +PE+ LQFEGQTK KLG+ AR V+S+VSEKL
Sbjct: 305 NELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSEKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN
Sbjct: 365 YYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTD 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY++IIIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 485 GVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGK +K+ YAWTD ELE+L+++ GKG ILQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK APRR+WIE +V+F ++E+
Sbjct: 605 VQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQED 643
>sp|Q8CSN9|PARE_STAES DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
sp|Q5HPI6|PARE_STAEQ DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
Length = 664
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/639 (67%), Positives = 533/639 (83%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++E+VDN+VDE L+G+GD I V I
Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAITVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
N+DGS+S+ D+GRGMPTG HA G PT +VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 65 NQDGSISIEDNGRGMPTGIHASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P T L K T K+GT VTF PD +IF ST
Sbjct: 125 ALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVK--TGKTKKTGTKVTFKPDSEIFKSTTT 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLK++K++LTDLR E +HYE G+++FV Y+NE KE L V
Sbjct: 183 FNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEVLHDV 242
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ N+YAR+
Sbjct: 243 TTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRI 302
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK+KDKNL+G+D REGL+A++S+ +PE+ LQFEGQTK KLG+ AR V+S+VSEKL
Sbjct: 303 NELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSEKLP 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN
Sbjct: 363 YYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTD 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 423 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY++IIIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 483 GVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGK +K+ YAWTD ELE+L+++ GKG ILQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 543 EKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETRTLIR 602
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK APRR+WIE +V+F ++E+
Sbjct: 603 VQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQED 641
>ref|NP_371878.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
Mu50]
ref|NP_374467.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
N315]
ref|YP_001246786.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
JH9]
ref|YP_001441932.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
Mu3]
dbj|BAB42446.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
N315]
dbj|BAB57516.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
Mu50]
gb|ABQ49210.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
JH9]
dbj|BAF78225.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
Mu3]
Length = 665
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/639 (67%), Positives = 530/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDGS+Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 127 ALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 245 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 305 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 365 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 485 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 605 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 643
>ref|YP_001316580.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
JH1]
sp|P66939|PARE_STAAN DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
sp|P66938|PARE_STAAM DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
dbj|BAA11084.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus]
gb|ABR52293.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
aureus JH1]
Length = 663
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/639 (67%), Positives = 530/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 65 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDGS+Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 125 ALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 242
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 243 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 302
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 303 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 363 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 423 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 483 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 543 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 602
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 603 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 641
>ref|NP_646058.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
MW2]
ref|YP_186242.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
COL]
ref|YP_493947.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
USA300]
ref|ZP_02760444.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
dbj|BAB95106.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
MW2]
gb|AAW36638.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
aureus COL]
gb|ABD20600.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
Length = 665
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/639 (67%), Positives = 530/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 127 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 245 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 305 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 365 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 485 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 605 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 643
>ref|YP_499879.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
NCTC 8325]
ref|YP_001332301.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
str. Newman]
ref|YP_001575178.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
sp|P0A0K9|PARE_STAAW DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
sp|Q5HG65|PARE_STAAC DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
sp|Q2FYS5|PARE_STAA8 DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
sp|P0C1S7|PARE_STAAU DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
gb|AAA53115.1| gyrase-like protein beta subunit
dbj|BAA11086.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus]
gb|ABD30447.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
aureus NCTC 8325]
dbj|BAF67539.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
aureus str. Newman]
gb|ABX29299.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
Length = 663
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/639 (67%), Positives = 530/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 65 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 125 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 242
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 243 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 302
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 303 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 363 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 423 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 483 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 543 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 602
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 603 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 641
>gb|AAQ19685.1| topoisomerase IV subunit B [Staphylococcus haemolyticus]
Length = 658
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/639 (67%), Positives = 535/639 (83%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++E+VDN+VDE L+G+G++I V I
Sbjct: 1 NHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGNEINVTI 60
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
N+D S+S+ D+GRGMP+G HA G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 61 NQDNSISIEDNGRGMPSGMHASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 120
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y+Q F+NGG P + L V + K+GT VTF PD +IF +T
Sbjct: 121 ALSEWLEVEIHRDGNIYKQSFKNGGVPASGL--VKSGKTKKTGTKVTFKPDPEIFKATTT 178
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F T+SERL+ESAFLLKN+K++L DLR + +HYE G+++FV Y+NE KE L V
Sbjct: 179 FNFETLSERLQESAFLLKNLKITLKDLRNGKEREDVYHYEEGIKEFVSYVNEGKEVLHDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 239 TMFTGASNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LKEKDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+VS+KL
Sbjct: 299 NELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSDKLP 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 359 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 418
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 419 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 478
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY++IIIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 479 GVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 538
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGK++++ YAWTD ELE L+++ GKG +LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 539 EKGKGKSKQVEYAWTDDELEKLQKKLGKGFMLQRYKGLGEMNPEQLWETTMNPETRTLIR 598
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V I+D R+ +RV+ LMGDK APRR+WIE +V+F ++E+
Sbjct: 599 VQIEDEMRSSKRVTTLMGDKVAPRREWIESHVEFGMQED 637
>ref|YP_043418.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
MSSA476]
emb|CAG43071.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
MSSA476]
Length = 665
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/639 (66%), Positives = 529/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 127 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 245 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 305 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 365 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+A V+IALPPLYK+
Sbjct: 485 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 605 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 643
>sp|Q6GH51|PARE_STAAR DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
Length = 663
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/639 (66%), Positives = 528/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 65 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 125 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 242
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 243 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 302
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 303 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN
Sbjct: 363 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTD 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 423 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 483 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 543 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 602
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE + +F ++E+
Sbjct: 603 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHFEFGMQED 641
>sp|Q6G9K5|PARE_STAAS DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
Length = 663
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/639 (66%), Positives = 529/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 65 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 125 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 183 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 242
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 243 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 302
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 303 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 363 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 423 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+A V+IALPPLYK+
Sbjct: 483 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKL 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 543 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 602
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 603 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 641
>ref|YP_253469.1| DNA topoisomerase IV subunit B [Staphylococcus haemolyticus
JCSC1435]
dbj|BAE04863.1| topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435]
Length = 666
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/639 (66%), Positives = 535/639 (83%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++E+VDN+VDE L+G+G++I V I
Sbjct: 7 NHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGNEINVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
N+D S+S+ D+GRGMP+G HA G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NQDNSISIEDNGRGMPSGMHASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y+Q F+NGG P + L V + K+GT VTF PD +IF +T
Sbjct: 127 ALSEWLEVEIHRDGNIYKQSFKNGGVPASGL--VKSGKTKKTGTKVTFKPDPEIFKATTT 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F T+SERL+ESAFLLKN+K++L DLR + +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFETLSERLQESAFLLKNLKITLKDLRNGKEREDVYHYEEGIKEFVSYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 245 TMFTGASNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LKEKDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+VS+KL
Sbjct: 305 NELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSDKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 365 YYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY++IIIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 485 GVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGK++++ YAWTD ELE L+++ GKG +LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKSKQVEYAWTDDELEKLQKKLGKGFMLQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V I+D R+ +RV+ LMGDK APRR+WIE +V+F ++E+
Sbjct: 605 VQIEDEMRSSKRVTTLMGDKVAPRREWIESHVEFGMQED 643
>ref|YP_040771.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
MRSA252]
emb|CAG40364.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 665
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/639 (66%), Positives = 528/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 127 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 245 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+S+ +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 305 NELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN
Sbjct: 365 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTD 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 485 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE + +F ++E+
Sbjct: 605 VQVEDEVRSSKRVTTLMGDKVQPRREWIEKHFEFGMQED 643
>ref|YP_416688.1| DNA topoisomerase IV subunit B [Staphylococcus aureus RF122]
emb|CAI80900.1| topoisomerase IV subunit B [Staphylococcus aureus RF122]
Length = 665
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/639 (67%), Positives = 528/639 (82%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDE L+G+G++I V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKDGS+S+ D+GRGMPTG H G PTV+VIFT+LHAGGKFGQ GYKTSGGLHGVG+SVVN
Sbjct: 67 NKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQSGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F+NGG P + L K K+GT VTF PDD IF ++
Sbjct: 127 ALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVK--KGKTKKTGTKVTFKPDDTIFKASTS 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ +SERL+ESAFLLKN+K++L DLR E +HYE G+++FV Y+NE KE L V
Sbjct: 185 FNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVGYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ +V+VA QYND +S++ILSFVNNVRTKDGG+HE G K+A+T+ NDYAR+
Sbjct: 245 ATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LK KDKNL+G+D REGL+AV+SI +PE+ LQFEGQTK KLG+ AR V+S+V++KL
Sbjct: 305 NELKTKDKNLDGNDIREGLTAVVSIRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L E G+++ LV+KAIKA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN
Sbjct: 365 FYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTD 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNELYLVEGDSAGGSAK GRDRKFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED NY+++IIMTDADTDGAHIQ LLLTFF++YM+PLV+AG V+IALPPLYK+
Sbjct: 485 GVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKGKT+++ YAWTD EL L++E GKG LQRYKGLGEMN QLWETTM+PETRTLIR
Sbjct: 545 EKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V ++D R+ +RV+ LMGDK PRR+WIE +V+F ++E+
Sbjct: 605 VQVEDELRSSKRVTTLMGDKVQPRREWIEKHVEFGMQED 643
>ref|YP_301494.1| DNA topoisomerase IV subunit B [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
dbj|BAE18549.1| topoisomerase IV subunit B [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 666
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/638 (67%), Positives = 530/638 (83%), Gaps = 3/638 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+DD+IQVLEGL+AVRKRPGMYIGSTD GLHHL++E+VDN+VDE L+GFG +I+V I
Sbjct: 7 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGFGSEIQVTI 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
NKD S+++ D+GRGMPTG H G PTVQVIFTILHAGGKFGQGGYKTSGGLHGVG+SVVN
Sbjct: 67 NKDESITIEDNGRGMPTGIHTSGKPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STID 188
ALS WLEVEI RDG++Y Q F GGKP T L V K+GT VTF PD +IF S
Sbjct: 127 ALSEWLEVEIYRDGNIYTQSFAQGGKPTTGL--VKHGKTKKTGTKVTFKPDPEIFKSATS 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F ++ +SERL+ESAFLLK +K++L DLR + FHYE+G+++FV Y+NE KE L V
Sbjct: 185 FNYDVLSERLQESAFLLKRLKITLKDLRAGKEREDVFHYEDGIKEFVAYVNEGKEVLHDV 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
G+ + +VEVA QYND +S+ ILSFVNNVRTKDGG+HE G KSA+T+ NDYAR+
Sbjct: 245 ADFSGEANNIEVEVAFQYNDQYSEGILSFVNNVRTKDGGTHEVGFKSAMTRVFNDYARRI 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
N LKEKDKNL+G+D REGL+A++SI +PE+ LQFEGQTK KLG+P AR V+S+V++KL
Sbjct: 305 NELKEKDKNLDGNDIREGLTAIISIRIPEELLQFEGQTKSKLGTPEARSAVDSVVADKLP 364
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L E G+++ LV+KA+KA+ AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +
Sbjct: 365 YYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTE 424
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
K ELYLVEGDSAGGSAK GRDRK+QAILPLRGKV+NTEKA++ DI KNEEINT+++TIGA
Sbjct: 425 KKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEINTIIHTIGA 484
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG +F +ED NY++IIIMTDADTDGAHIQ LLLTFF++YM+PLVEAG V+IALPPLYK+
Sbjct: 485 GVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAGRVFIALPPLYKL 544
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGKG + KI YAWTD ELE L+++ GKG LQRYKGLGEMNA+QLWETTM+P+TRTLIR
Sbjct: 545 EKGKGASRKIEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNADQLWETTMNPDTRTLIR 604
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
V ++D R+ +RV+ LMGDK APRR+WIE++V+F L+E
Sbjct: 605 VQVEDELRSSKRVTTLMGDKVAPRREWIENHVEFGLQE 642
>ref|YP_806628.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334]
gb|ABJ70186.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334]
Length = 670
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/636 (66%), Positives = 514/636 (80%), Gaps = 3/636 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YND +IQVL GL+AVRKRPGMYIGSTD GLHHL++EIVDN+VDEAL+GFGD+I V I+
Sbjct: 8 YNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEINVTIHA 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D SV+V D GRGMPTG H G PT++VI T+LHAGGKF Q YKTSGGLHGVGSSVVNAL
Sbjct: 68 DNSVTVQDHGRGMPTGMHPSGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVGSSVVNAL 127
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S L V + RD + + F NGG P +L+K+G +GT +TF PD IF T F +
Sbjct: 128 SESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKV-NEPNGTTITFKPDPTIFQTTVFSY 186
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
+T++ERL+ESAFLLKN+ ++LTD R + +HY +G+ FV+YLNE K+ L+ VI
Sbjct: 187 DTLAERLRESAFLLKNITINLTDERTGKH--DSYHYPDGLVSFVKYLNEGKDALSQVINF 244
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
EG+ V+ A QYNDG+S+N++SFVNNVRT DGG+HE GL+S +T+A N++ARK LL
Sbjct: 245 EGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNEFARKVGLL 304
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
+E+DKNLEGSD REG + +LS+ +PE+ LQFEGQTK KLG+P AR +V+ IV +KL+ FL
Sbjct: 305 RERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIVYDKLSTFL 364
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
+ENGE + LVRKA+KARDAREAARKARDDSR G+K KKD+GLLSGKLTPAQ+KN K+NE
Sbjct: 365 MENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQTKNPKRNE 424
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNT+KAK+ DI+KNEEINTM+YTIGAGVG
Sbjct: 425 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMIYTIGAGVG 484
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
ADF+L+ NYDKIIIMTDADTDGAHIQ LLLTFFYRYMRPL++AG +YIALPPLY++ KG
Sbjct: 485 ADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIALPPLYRLQKG 544
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
G KI+YAWTD EL + GKG L R+KGLGEMNA+QLWETTM+PETRTLIRV I
Sbjct: 545 AGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMNPETRTLIRVRI 604
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
DD AERRV+ LMGD+ PRR+WIE NVKF ++++
Sbjct: 605 DDAQLAERRVTTLMGDRVEPRREWIEHNVKFDMDDD 640
>ref|YP_001125756.1| DNA topoisomerase IV subunit B [Geobacillus thermodenitrificans
NG80-2]
gb|ABO67011.1| Topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2]
Length = 617
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/615 (68%), Positives = 513/615 (83%), Gaps = 4/615 (0%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTD+ GLHHL++EIVDN+VDEAL+G+G+ I V I+KD SV+V D GRGMP G H +
Sbjct: 1 MYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIHKDNSVTVLDEGRGMPVGMHKL 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS WL V I RDG +YRQRFE
Sbjct: 61 GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFE 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMS 211
NGGKPVTTL+ +GT +K+GT++ F PD IFST F + T+SERL+ESAFLLK +K+
Sbjct: 121 NGGKPVTTLENIGTT--NKTGTIIQFKPDPTIFSTTVFDYETLSERLRESAFLLKGLKIE 178
Query: 212 LTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFS 271
L D R + E FHYENG++ FV YLNE+K+ L PV Y G+ +VE A Q++DG+S
Sbjct: 179 LVDER--TGMREVFHYENGIEAFVAYLNEEKDVLHPVAYFAGEQNGIEVEFAFQFHDGYS 236
Query: 272 DNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVL 331
+N+LSFVNNVRTKDGG+HE G K+A+T+ N+YAR+ LLKEKDKNLEG+D REG+SA++
Sbjct: 237 ENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGTDIREGMSAIV 296
Query: 332 SILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDA 391
S+ +PE LQFEGQTK KLG+ AR V+++VSE+LT+FL EN +V++ L++KAI+A A
Sbjct: 297 SVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSAMLIKKAIRAYQA 356
Query: 392 REAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRK 451
REAARKAR+++R+GKK K + LLSGKLTPAQ +N +KNELYLVEGDSAGGSAKQGRDR+
Sbjct: 357 REAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRR 416
Query: 452 FQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDAD 511
FQA+LPLRGKV+NTEKAK+ DILKNEEINT+++ IG GVGADF++EDINYDK+IIMTDAD
Sbjct: 417 FQAVLPLRGKVINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINYDKVIIMTDAD 476
Query: 512 TDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLR 571
TDGAHIQ LLLTFFYRYMRPL+EAG VYIALPPLYK+SKG GK E + YAWTD +L ++
Sbjct: 477 TDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLREIT 536
Query: 572 REFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAP 631
++ G+G +QRYKGLGEMNA+QLWETTM+PETRTLIRV I+D ARAERRV+ LMGDK P
Sbjct: 537 KKMGRGYTIQRYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEP 596
Query: 632 RRQWIEDNVKFTLEE 646
RR+WIE +V F LEE
Sbjct: 597 RRKWIETHVAFGLEE 611
>emb|CAA97606.1| GrlB [Bacillus subtilis]
Length = 627
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/617 (68%), Positives = 510/617 (82%), Gaps = 4/617 (0%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTDA GLHHL++EIVDN+VDE L+G GD I V I+KD S+SV D GRGMPTG H +
Sbjct: 1 MYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMHKL 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G PT +VI T+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS WL V I RDG VY+QRFE
Sbjct: 61 GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQRFE 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMS 211
NGGKPVT+L+K+G K+GT+ F PD +FST + F T+SERL+ESAFLLK +K+
Sbjct: 121 NGGKPVTSLEKIGKT--KKTGTLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKGLKIE 178
Query: 212 LTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFS 271
L D R D E F+YENG++ FV YLNE+K+ L+ V+ EG+ +V+ A Q+NDG+S
Sbjct: 179 LIDERNDQR--EVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDGYS 236
Query: 272 DNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVL 331
+NILSFVNNVRTKDGG+HE+G K+A+T+A N+YARK LLKEKDKNLEG+D REGLSA++
Sbjct: 237 ENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSAII 296
Query: 332 SILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDA 391
S+ +PE+ LQFEGQTK KLG+ AR V++IVSE+L +FL EN + A+ LV+KAIKA A
Sbjct: 297 SVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKASQA 356
Query: 392 REAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRK 451
REAARKAR+++R+GKK KK + LSGKLTPA S+N KNELYLVEGDSAGGSAKQGRDR+
Sbjct: 357 REAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRDRR 416
Query: 452 FQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDAD 511
FQA+LPLRGKV+NTEKAK+ADI KNEEINT+++ IG GVGADF+++DINYDKIIIMTDAD
Sbjct: 417 FQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDKIIIMTDAD 476
Query: 512 TDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLR 571
TDGAHIQ LLLTFFYRYM+PL+E G V+IALPPLYK+SKG GK E I YAW+D E+ D+
Sbjct: 477 TDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEEMGDVL 536
Query: 572 REFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAP 631
++ GKG +QRYKGLGEMNA+QLWETTM+PE+RTL+RV IDD AR ERRV+ LMGDK P
Sbjct: 537 KKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEP 596
Query: 632 RRQWIEDNVKFTLEENT 648
RR+WIE NV F L+E +
Sbjct: 597 RRKWIEKNVAFGLDEES 613
>ref|YP_193997.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus NCFM]
gb|AAV42966.1| DNA topoisomerase IV subunitB [Lactobacillus acidophilus NCFM]
Length = 648
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/639 (64%), Positives = 522/639 (81%), Gaps = 3/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+D +IQ+L GL+AVRKRPGMYIGSTD GL+ L++EIVDN+VDEA++GFG +I V I
Sbjct: 5 NTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEIDVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
+KD S+++ D GRGMPTG H G PT++VI T+LHAGGKF + YKTSGGLHGVGSSVVN
Sbjct: 65 HKDNSITIRDFGRGMPTGMHKSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGSSVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS++++V + RDG Y + F+NGG PV TLK +G +GT +TF PDD +FST +
Sbjct: 125 ALSSYMKVRVVRDGKAYEEEFQNGGHPVGTLKCLGKTS-DPTGTTITFKPDDTVFSTTKY 183
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
K+ TI ER++ESAFLLK VK LTD R + + F Y++G++ FV YLNE K T++ V
Sbjct: 184 KYETIQERIRESAFLLKGVKFVLTDERTPEHH-DVFQYDDGIKSFVSYLNEGKGTISNVF 242
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y EG+ ++E + QY+DG+S+N++SFVNNVRT DGG+HE+G +S T+A NDYA+K
Sbjct: 243 YFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYAKKQG 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LL +KDKN++GSDYREGLSAVLSI +PE+ L+FEGQTK KLG+P AR V+S+V EK+++
Sbjct: 303 LLGKKDKNIDGSDYREGLSAVLSIKIPEELLEFEGQTKGKLGTPQARSAVDSLVYEKMSY 362
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L+ENGE+A LV+KA +ARDAREAA+KARD+SRNGKK +K K +LSGKLTPAQS+N KK
Sbjct: 363 YLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRK-KEVLSGKLTPAQSRNPKK 421
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
NEL+LVEGDSAGGSAKQGRDR+FQAILPLRGKVLNT+KAK+ DI KNEEINTM+YTIGAG
Sbjct: 422 NELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTIGAG 481
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
VG +FN++D NYDK+IIMTDAD DGAHIQ LLLTFFYRYMRP++E G VYIALPPLY++
Sbjct: 482 VGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEQGKVYIALPPLYRLQ 541
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
KG+GK +I YAWTD EL + ++ G+G LQR+KGLGEMNA QLW+TTM+PE+R LIRV
Sbjct: 542 KGRGKNVEIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMNPESRMLIRV 601
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
IDD A AERRV+ LMGDK A RR+WIE+NVKF + E++
Sbjct: 602 KIDDAALAERRVTTLMGDKVAARRKWIEENVKFRMGEDS 640
>ref|YP_001577546.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571]
gb|ABX27255.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571]
Length = 653
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/640 (65%), Positives = 520/640 (81%), Gaps = 5/640 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+D +IQ+L GL+AVRKRPGMYIGSTD GL+ L++EIVDN+VDEA++GFG +I V I
Sbjct: 10 NTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEIDVTI 69
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
+KD SV++ D GRGMPTG H G PT++VI T+LHAGGKF + YKTSGGLHGVGSSVVN
Sbjct: 70 HKDNSVTIRDFGRGMPTGMHKSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGSSVVN 129
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS++++V + RDG Y + FE GG P+ TLK +G K +GT +TF PD IFST +
Sbjct: 130 ALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKT-KDPTGTTITFKPDAMIFSTTKY 188
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEE-FHYENGVQDFVEYLNEDKETLTPV 248
K+ TI ER++ESAFLLK VK LTD R DP + F Y++G++ FV YLNE K T++ V
Sbjct: 189 KYETIQERIRESAFLLKGVKFVLTDER--DPEHHDVFQYDDGIKSFVSYLNEGKGTISDV 246
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
Y EG+ ++E + QY+DG+S+N++SFVNNVRT DGG+HE+G +S T+A NDYA+K
Sbjct: 247 FYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYAKKQ 306
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LL +KDKN++GSDYREGLSAVLS+ +PE+ L+FEGQTK KLG+P AR V+S+V EK++
Sbjct: 307 GLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYEKMS 366
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L+ENGE+A LV+KA +ARDAREAA+KARD+SRNGKK +K K +LSGKLTPAQS+N K
Sbjct: 367 YYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRK-KEVLSGKLTPAQSRNPK 425
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNEL+LVEGDSAGGSAKQGRDR+FQAILPLRGKVLNT+KAK+ DI KNEEINTM+YTIGA
Sbjct: 426 KNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTIGA 485
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVGA+FN++D NYDK+IIMTDAD DGAHIQ LLLTFFYRYMRP++E G +YIALPPLY++
Sbjct: 486 GVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPLYRL 545
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KG+GK +I YAWTD EL + + +G LQR+KGLGEMNA QLW+TTM+PE+R LIR
Sbjct: 546 QKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRMLIR 605
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENT 648
V IDD A AERRV+ LMGDK A RR+WIE NVKF + E++
Sbjct: 606 VKIDDAALAERRVTTLMGDKVAARRKWIEKNVKFRMGEDS 645
>ref|YP_001271383.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri F275]
gb|ABQ83046.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri F275]
Length = 674
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/637 (65%), Positives = 524/637 (82%), Gaps = 2/637 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ +IQVL+GL+AVRKRPGMYIGSTD+ GLHHL++EIVDNAVDEALSG+GD+I ++I
Sbjct: 13 YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINIIIEA 72
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQG-GYKTSGGLHGVGSSVVNA 130
D +++V D GRGMP G HA G PT +VI T+LHAGGKFGQ GYKTSGGLHGVG+SVVNA
Sbjct: 73 DNAITVQDHGRGMPVGMHASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVVNA 132
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS+ L + I RD Y++ F++GG+PV TLKK+G K+++GT V+F PD KIFST +
Sbjct: 133 LSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKT-KAENGTTVSFKPDPKIFSTTVYD 191
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+NT++ RL+ESAFLLK +K++LTD R + F + +G+Q+FV YLNE K+ L +Y
Sbjct: 192 YNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNEGKDVLGKTLY 251
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
+G+ +VEVA QYNDG+S+++LSFVNNVRT DGG+HE G +SA TK N+YA+K L
Sbjct: 252 FDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNEYAKKVGL 311
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LK DKNLEGSD REGL+AV+S+ +PE+ LQFEGQTKDKLG+ AR IV++IVSE+L +
Sbjct: 312 LKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIVDAIVSEQLNYA 371
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L+ENG+ A L+RKA+KAR+AREAARKAR+ +R GK+ K + LSGKLTPAQSKNAKKN
Sbjct: 372 LMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKN 431
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
EL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ D+LKNEE+NT++YT+GAG
Sbjct: 432 ELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGA 491
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
G++FN+ED NYDKIIIMTDAD DGAHIQ LLLTFFY+YMRP++EAG +YIALPPLY++ +
Sbjct: 492 GSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQR 551
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G+G I YAWT+ EL L ++ GKGA LQR+KGLGEMNA+QLWETTM+P+TRTLI+V
Sbjct: 552 GRGAKTNITYAWTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPDTRTLIQVR 611
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
I+D AERRV+ LMG+K PRR+WIE+NV+FTL ++
Sbjct: 612 IEDAELAERRVTTLMGNKVEPRREWIEENVQFTLADD 648
>ref|YP_001841748.1| topoisomerase IV B subunit [Lactobacillus reuteri F275]
dbj|BAG25268.1| topoisomerase IV B subunit [Lactobacillus reuteri F275]
Length = 669
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/647 (64%), Positives = 529/647 (81%), Gaps = 5/647 (0%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ K+E+ Y+ +IQVL+GL+AVRKRPGMYIGSTD+ GLHHL++EIVDNAVDEALSG+
Sbjct: 1 MAKEEV---KYDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGY 57
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQG-GYKTSGGL 120
GD+I ++I D +++V D GRGMP G HA G PT +VI T+LHAGGKFGQ GYKTSGGL
Sbjct: 58 GDEINIIIEADNAITVQDHGRGMPVGMHASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGL 117
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS+ L + I RD Y++ F++GG+PV TLKK+G K+++GT V+F PD
Sbjct: 118 HGVGASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKT-KAENGTTVSFKPD 176
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
KIFST + +NT++ RL+ESAFLLK +K++LTD R + F + +G+Q+FV YLNE
Sbjct: 177 PKIFSTTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNE 236
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
K+ L +Y +G+ +VEVA QYNDG+S+++LSFVNNVRT DGG+HE G +SA TK
Sbjct: 237 GKDVLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKT 296
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
N+YA+K LLK DKNLEGSD REGL+AV+S+ +PE+ LQFEGQTKDKLG+ AR IV+
Sbjct: 297 FNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIVD 356
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
+IVSE+L + L+ENG+ A L+RKA+KAR+AREAARKAR+ +R GK+ K + LSGKLT
Sbjct: 357 AIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLT 416
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSKNAKKNEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ D+LKNEE+N
Sbjct: 417 PAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELN 476
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
T++YT+GAG G++FN+ED NYDKIIIMTDAD DGAHIQ LLLTFFY+YMRP++EAG +YI
Sbjct: 477 TIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYI 536
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLY++ +G+G I YAWT+ EL L ++ GKGA LQR+KGLGEMNA+QLWETTM+
Sbjct: 537 ALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMN 596
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
P+TRTLI+V I+D AERRV+ LMG+K PRR+WIE+NV+FTL ++
Sbjct: 597 PDTRTLIQVRIEDAELAERRVTTLMGNKVEPRREWIEENVQFTLADD 643
>ref|ZP_02867405.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552]
gb|EDS74920.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552]
Length = 642
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/639 (66%), Positives = 525/639 (82%), Gaps = 6/639 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y++ IQ+LEGL+AVRKRPGMYIGSTD+ GLHHL+WEIVDNA+DEALSGFGD+I+V I
Sbjct: 5 NSYDESNIQILEGLEAVRKRPGMYIGSTDSRGLHHLVWEIVDNAIDEALSGFGDNIQVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQ-GGYKTSGGLHGVGSSVV 128
KD S+ V+D GRGMPTG HA G P +VI T+LHAGGKF + GGYKTSGGLHGVG+SVV
Sbjct: 65 CKDNSIIVSDHGRGMPTGMHASGRPATEVILTVLHAGGKFNEDGGYKTSGGLHGVGASVV 124
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS WLEV + RDG +++QRFENGG + LK VG +K+GT + F+PD IFST +
Sbjct: 125 NALSTWLEVTVYRDGKIWQQRFENGGSKIGKLKVVGKT--NKTGTTIHFLPDASIFSTTE 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
+ F+TISERL ESAFLLK +++ L D R D ++ + Y+NG+ FVEYLN +K+ L P+
Sbjct: 183 YNFSTISERLMESAFLLKGIRIDLKDERSDKEVV--YQYDNGLIAFVEYLNYEKDVLNPI 240
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
I +EG + + +V++A+Q+ G+ +N LSFVN VRT DGGSHETG +SA+T+ N+YARK
Sbjct: 241 ISIEGINNEIEVDLAMQFTSGYQENTLSFVNLVRTSDGGSHETGFRSALTRTFNEYARKY 300
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LLKEKDKNLEG+D REGLSA++SI VPE LQFEGQTK KLG+P AR +V++IV EKL+
Sbjct: 301 GLLKEKDKNLEGNDVREGLSAIISIKVPEHLLQFEGQTKSKLGTPEARNVVDNIVYEKLS 360
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN ++A L++K IKA R+AARKAR+ +R GK +++K +LSGKL PAQSK+ K
Sbjct: 361 FYLEENKQIADVLIKKMIKAAQVRDAARKAREAARKGKGTRQEK-ILSGKLAPAQSKDKK 419
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+ ELYLVEGDSAGGSAKQGRDRK+QAILPLRGKV+NTEKA M+DILKNEEI T++ TIGA
Sbjct: 420 RKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVINTEKAAMSDILKNEEIATIINTIGA 479
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVGADFN +D NY+K+IIMTDADTDGAHIQTLLLTFFYRYM+ L+ AG VYIALPPLYK+
Sbjct: 480 GVGADFNEKDSNYNKVIIMTDADTDGAHIQTLLLTFFYRYMKGLITAGKVYIALPPLYKI 539
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
SK GK E+ YAW D ELED +++ GKG ++QRYKGLGEMNA+QLWETTM+PETRTLI+
Sbjct: 540 SKKNGKKEEAIYAWQDDELEDAKKKIGKGYVVQRYKGLGEMNASQLWETTMNPETRTLIQ 599
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
V+IDD A ERRVSVLMGDK PRR+WIE NV+FTLE+N
Sbjct: 600 VSIDDAALVERRVSVLMGDKVEPRREWIEQNVQFTLEDN 638
>emb|CAK18887.1| topoisomerase IV subunit B [Staphylococcus intermedius]
Length = 637
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/617 (67%), Positives = 507/617 (82%), Gaps = 3/617 (0%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTD GLHHL++E+VDN+VDE L+G+G++I V IN+D S++VAD+GRGMPTG H
Sbjct: 1 MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTHRS 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS L VEI RDG ++ Q+F
Sbjct: 61 GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLTVEIHRDGEIFEQQFA 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STIDFKFNTISERLKESAFLLKNVKM 210
+GG P T L K G ++GT VTF PD +IF + F F T+SERL+ESAFLL+N+K+
Sbjct: 121 HGGVPQTKLIKKGKT--KRTGTTVTFKPDPEIFKAATSFNFETLSERLQESAFLLQNLKI 178
Query: 211 SLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGF 270
+L D R E +HYE G++ FV Y+NE KE L V +G + +V+V+ QYND +
Sbjct: 179 TLEDRRAGKERSEVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTSNEIEVDVSFQYNDQY 238
Query: 271 SDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAV 330
S++I+SFVNNVRTKDGG+HE G K+A+T+ N+YAR+ LK KDKNLEG+D REGL+A+
Sbjct: 239 SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLTAI 298
Query: 331 LSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARD 390
+S+ +PE LQFEGQTK KLG+P AR V++IV+EKL F+L E G+++ LV+KAIKA+
Sbjct: 299 ISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKAQQ 358
Query: 391 AREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDR 450
AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +KNELYLVEGDSAGGSAK GRDR
Sbjct: 359 AREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDR 418
Query: 451 KFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDA 510
KFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGAGVG DFNLED NY++IIIMTDA
Sbjct: 419 KFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLEDSNYNRIIIMTDA 478
Query: 511 DTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDL 570
DTDGAHIQ LLLTFF++YMRPLV AG VYIALPPLYK+ KGKGK +KIAYAWTD ELE L
Sbjct: 479 DTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEELEKL 538
Query: 571 RREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAA 630
+RE GKG +LQRYKGLGEMN +QLWETTM+PETRTLIRV IDD R+ +RVS LMGDK A
Sbjct: 539 QREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRVSTLMGDKVA 598
Query: 631 PRRQWIEDNVKFTLEEN 647
PRR+WIE +V+F ++E+
Sbjct: 599 PRREWIERHVQFGMQED 615
>ref|YP_618973.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
ref|YP_812915.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
emb|CAI97795.1| DNA topoisomerase IV, subunit B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gb|ABJ58477.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 643
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/642 (65%), Positives = 517/642 (80%), Gaps = 8/642 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+D +IQ+L GL+AVRKRPGMYIGSTD GL+ L++EIVDN+VDEA++GFG +I V I
Sbjct: 4 NTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINVTI 63
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
++D SV+V D GRGMPTG HA G PT++VI T+LHAGGKF + YKTSGGLHGVGSSVVN
Sbjct: 64 HEDNSVTVQDFGRGMPTGMHASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGSSVVN 123
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS++++V + RDG Y + F+NGG P+ TL+ +G A K K+GT +TF PD IFST +
Sbjct: 124 ALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLG-ATKEKTGTTITFKPDPMIFSTTKY 182
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
+ TI ER++ESAFLLK VK +LTD R + + F Y++G++ FV YLNE K T+ V
Sbjct: 183 NYETIQERIRESAFLLKGVKFTLTDERTPNHH-DVFQYDDGIESFVAYLNEGKGTIGKVF 241
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y EG ++E A QY+D +S+N +SFVNNVRT DGGSHE G +S T+A NDYA+K
Sbjct: 242 YFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDYAKKQG 301
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LL +KDKNLEGSDYREGLSAVLS+ +PE+ L+FEGQTK KLG+P AR V+SIV EKL++
Sbjct: 302 LLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVYEKLSY 361
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+LLENGE A LV+KA +ARDAREAA+KARD+SRNGKK K K +LSGKLTPAQS+N KK
Sbjct: 362 YLLENGEWAQDLVKKAQRARDAREAAKKARDESRNGKKRHK-KEVLSGKLTPAQSRNPKK 420
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
NEL+LVEGDSAGGSAKQGRDR+FQAILPLRGKVLNT++AK+ADI KNEEINTM++TIGAG
Sbjct: 421 NELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHTIGAG 480
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
VG +F +ED NYDKIIIMTDAD DGAHIQ LLLTFFYRYMRP++EAG VYIALPPLY++S
Sbjct: 481 VGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPPLYRIS 540
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
K + YAWTD E ++ ++ GKG LQR+KGLGEMNA+QLWETTM+PE+R LIRV
Sbjct: 541 KKQTNL----YAWTDEERDEYEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIRV 596
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL-EENTVF 650
IDD AERRV+ LMGD+A+ RR+WIE+NVKF L EE ++
Sbjct: 597 RIDDAQLAERRVTTLMGDQASARRKWIEENVKFRLGEEESIL 638
>ref|YP_001814062.1| DNA topoisomerase IV, B subunit [Exiguobacterium sibiricum 255-15]
gb|ACB61045.1| DNA topoisomerase IV, B subunit [Exiguobacterium sibiricum 255-15]
Length = 653
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/639 (66%), Positives = 528/639 (82%), Gaps = 5/639 (0%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
+NNYNDDAIQVLEGL+AVRKRPGMYIGSTD GLHHL++EIVDNA+DEAL+GFG+ I V+
Sbjct: 5 LNNYNDDAIQVLEGLEAVRKRPGMYIGSTDHRGLHHLVYEIVDNAIDEALAGFGEQIDVI 64
Query: 69 INKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
I+KD +++V D GRGMPTG HA G PT +VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVV
Sbjct: 65 IHKDNAITVRDHGRGMPTGMHASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 124
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS L+V I RDG + Q FE+GG P TTL + GT + GT V F PD KIFST+
Sbjct: 125 NALSTQLKVTIYRDGKQFEQTFEDGGIPKTTLLETGTT--RQKGTSVYFKPDGKIFSTLT 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
+ ++T++ERL+ESAFLLK +K++LTD R D + F YE+GV +FV YLN+DK+TL P
Sbjct: 183 YNYDTLAERLRESAFLLKGLKITLTDERSDKA--DTFQYEDGVSEFVGYLNDDKDTLHPT 240
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
+ EG + D +V++A Q+ D +S+N+LSFVNNVRT+DGG+HE G K+A+T+ MN+YARK
Sbjct: 241 VAFEGTENDIEVDIAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRVMNEYARKN 300
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LLKEKDKNL+G+D REGL+ ++SI +PE+ LQFEGQTK KLGSP AR +++++ +L+
Sbjct: 301 TLLKEKDKNLDGNDIREGLTMIVSIRIPEEFLQFEGQTKSKLGSPEARTSCDAVITRRLS 360
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
+L EN + A+ L++KAI+A AREAARKAR+++RNGKK KK +L+GKLTPA SKNA+
Sbjct: 361 TYLEENPQTATLLIKKAIRAAQAREAARKAREEARNGKK-KKRSSILNGKLTPAASKNAE 419
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNEL+LVEGDSAGGSAKQGR+R FQAILPLRGKVLNTEKAK+ADI+KNEEIN +++ IG+
Sbjct: 420 KNELFLVEGDSAGGSAKQGRNRTFQAILPLRGKVLNTEKAKLADIMKNEEINMIIHAIGS 479
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVGADF+L D N+DK+IIMTDADTDGAHIQ LLLTFF+RYMRPL++AG V++ALPPLY++
Sbjct: 480 GVGADFDLSDCNFDKVIIMTDADTDGAHIQVLLLTFFFRYMRPLIDAGKVFVALPPLYRV 539
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
SKGKGK+EK Y W + L ++FGKG ++QRYKGLGEMNA QLWETTMDPETRTLIR
Sbjct: 540 SKGKGKSEKFEYVWDEETLAKTTKKFGKGYMIQRYKGLGEMNAPQLWETTMDPETRTLIR 599
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
VTIDD A AE+RVSVLMGD RR WIEDNV F L E+
Sbjct: 600 VTIDDAAVAEKRVSVLMGDNVGHRRSWIEDNVAFGLTED 638
>ref|YP_810600.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1]
gb|ABJ56935.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1]
Length = 674
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/646 (66%), Positives = 531/646 (82%), Gaps = 4/646 (0%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M KKEI+ YN+ I++LEGL+AVR RPGMYIGSTD GLHHL+WEIVDNAVDE L+G
Sbjct: 8 MTKKKEIS---YNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAG 64
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
+GD IKV+I++D S++V D GRGMP G HA G PT +VI T+LHAGGKFGQGGYKT+GGL
Sbjct: 65 YGDSIKVIIHQDNSITVVDHGRGMPVGMHASGKPTPEVILTVLHAGGKFGQGGYKTAGGL 124
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALS L VEI RDG YR+ FENGGKPV +LKK+G K ++GT +TF PD
Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKT-KDQTGTTITFKPD 183
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
IFST +KF TI++RL+ESAFLLK +K++L D R D IIEE+ Y++G+++FV+YLNE
Sbjct: 184 PTIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKEFVDYLNE 243
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
K + VIY +G+ Q +VEVA QYNDG+S+ +LSFVNNVRT DGG+HETG+K A TKA
Sbjct: 244 GKAVIGKVIYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
NDYARK LLKEKD N +GSD REGLS V+++ VPE LQFEGQTK+KLG+ AR V
Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
S++ E+L +L+ENG+ A +LVRKA++AR+AR+AARKARD+SR+GKK K+ + LLSGKLT
Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKRKEFLLSGKLT 423
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSK+A K EL+LVEGDSAGGSAKQGR RKFQA+LPLRGKVLNTEKA + ++LKNEEI+
Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TM+YTIGAGVG DFN++D Y+K+IIMTDAD DGAHIQTLLLTFFY+YMRPLVEAG VYI
Sbjct: 484 TMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVYI 543
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYK++ G K +K +AWT+ EL +L ++ +G + RYKGLGEM+AN LWETTMD
Sbjct: 544 ALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMD 603
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
P+ RTLIRV I+D A AE+RV++LMGD+ APRR+WIEDNV F+L+E
Sbjct: 604 PDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDE 649
>ref|ZP_01544326.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163]
gb|EAV39456.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163]
Length = 674
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/646 (66%), Positives = 530/646 (82%), Gaps = 4/646 (0%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M KKEI+ YN+ I++LEGL+AVR RPGMYIGSTD GLHHL+WEIVDNAVDE L+G
Sbjct: 8 MTKKKEIS---YNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAG 64
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
+GD IKV+I++D S++V D GRGMP G HA G PT +VI T+LHAGGKFGQGGYKT+GGL
Sbjct: 65 YGDSIKVIIHQDNSITVVDHGRGMPVGMHASGKPTPEVILTVLHAGGKFGQGGYKTAGGL 124
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVGSSVVNALS L VEI RDG YR+ FENGGKPV +LKK+G K ++GT +TF PD
Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKT-KDQTGTTITFKPD 183
Query: 181 DKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
IFST +KF TI++RL+ESAFLLK +K++L D R D IIEE+ Y++G+++FV+YLNE
Sbjct: 184 PTIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKEFVDYLNE 243
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
K + V+Y +G+ Q +VEVA QYNDG+S+ +LSFVNNVRT DGG+HETG+K A TKA
Sbjct: 244 GKAVIGKVMYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
NDYARK LLKEKD N +GSD REGLS V+++ VPE LQFEGQTK+KLG+ AR V
Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
S++ E+L +L+ENG+ A +LVRKA++AR+AR+AARKARD+SR+GKK K + LLSGKLT
Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEFLLSGKLT 423
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSK+A K EL+LVEGDSAGGSAKQGR RKFQA+LPLRGKVLNTEKA + ++LKNEEI+
Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
TM+YTIGAGVG DFN++D Y+K+IIMTDAD DGAHIQTLLLTFFY+YMRPLVEAG VYI
Sbjct: 484 TMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVYI 543
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
ALPPLYK++ G K +K +AWT+ EL +L ++ +G + RYKGLGEM+AN LWETTMD
Sbjct: 544 ALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMD 603
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
P+ RTLIRV I+D A AE+RV++LMGD+ APRR+WIEDNV F+L+E
Sbjct: 604 PDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDE 649
>ref|ZP_02991130.1| DNA topoisomerase IV, B subunit [Exiguobacterium sp. AT1b]
gb|EDU20933.1| DNA topoisomerase IV, B subunit [Exiguobacterium sp. AT1b]
Length = 655
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/637 (65%), Positives = 525/637 (82%), Gaps = 5/637 (0%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NYN+DAIQVLEGL AVRKRPGMYIGSTD GLHHL++EIVDNA+DEAL+GFG I V I+
Sbjct: 7 NYNEDAIQVLEGLTAVRKRPGMYIGSTDHRGLHHLVYEIVDNAIDEALAGFGGQIDVTIH 66
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
K+ +++V D GRGMPTG HA G PT +VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNA
Sbjct: 67 KNDAITVRDHGRGMPTGMHASGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS+ + V I RDG V+ Q F +GG P TTL + T ++GT V F PD IFST +
Sbjct: 127 LSSKVVVTIHRDGKVFEQTFADGGVPQTTL--IETGKTRQTGTSVYFKPDATIFSTTTYN 184
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+T++ERL+ESAFLLK + ++LTD R + E FHYE G+ +FV+YLN+DK TL P++Y
Sbjct: 185 HDTLAERLRESAFLLKGLTITLTDERTEKQ--ETFHYEEGIAEFVQYLNDDKATLHPIVY 242
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
EG + + ++E+A Q+ D +S+N+LSFVNNVRT+DGG+HE G K+A+T+ MN+YARK L
Sbjct: 243 FEGTENEIEIELAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRIMNEYARKNGL 302
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKEKDKNL+G D REGL+ ++S+ +PE+ LQFEGQTK KLGSP AR +S+++++LT F
Sbjct: 303 LKEKDKNLDGGDVREGLTLIVSVRIPEEFLQFEGQTKSKLGSPEARASADSVMAKQLTIF 362
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L EN ++A+ L++KAI+A AREAARKAR+++RNGKK KK +L+GKLTPA SKNA KN
Sbjct: 363 LEENPQMATMLIKKAIRAAQAREAARKAREEARNGKK-KKRSSILNGKLTPATSKNAAKN 421
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
EL+LVEGDSAGGSAKQGRDR FQAILPLRGKV+N+EK+K+ DI+KNEEINT+++ IGAGV
Sbjct: 422 ELFLVEGDSAGGSAKQGRDRTFQAILPLRGKVINSEKSKLQDIMKNEEINTIIHAIGAGV 481
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
G DF+L+D N+DKIIIMTDADTDGAHIQ LLLTFF+RYMRPLVEAG V++ALPPLY++SK
Sbjct: 482 GHDFDLDDCNFDKIIIMTDADTDGAHIQVLLLTFFFRYMRPLVEAGRVFVALPPLYRISK 541
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
GKGK+E+ YAW + LE L + + KG ILQRYKGLGEMNA+QLWETTM+P+TRTLIRVT
Sbjct: 542 GKGKSEQFDYAWDEDALEKLVKVYKKGYILQRYKGLGEMNADQLWETTMNPDTRTLIRVT 601
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
+DD A A++RVSVLMGD RR+WIE+NV F L+E+
Sbjct: 602 VDDAAVADKRVSVLMGDNVTHRREWIEENVAFGLQED 638
>ref|ZP_02184808.1| DNA topoisomerase IV subunit B [Carnobacterium sp. AT7]
gb|EDP68354.1| DNA topoisomerase IV subunit B [Carnobacterium sp. AT7]
Length = 587
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/564 (70%), Positives = 486/564 (86%), Gaps = 3/564 (0%)
Query: 83 GMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRD 142
GMPTG H+ GIPTVQVIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS WL V I RD
Sbjct: 1 GMPTGMHSSGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIIRD 60
Query: 143 GSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESA 202
G Y+Q+F +GGK +LKK+ T+ K+GT+V F PD IF+T++ ++ ++ERL+ESA
Sbjct: 61 GVHYQQKFVDGGKAKGSLKKIKTS-NEKNGTIVHFKPDATIFTTVNLSYDVLAERLRESA 119
Query: 203 FLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEV 262
FLLK +++SL D R D E F+YE G+++FV YLNEDK+ LTPV Y EG++ + +VE
Sbjct: 120 FLLKGLRISLVDERNDQA--EVFYYEEGIKEFVSYLNEDKDHLTPVAYFEGENNEIEVEF 177
Query: 263 ALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSD 322
A QYNDG+S+ ILSFVNNVRTKDGG+HE G+K+AITK NDYARK +LLKEKDKNLEG+D
Sbjct: 178 AFQYNDGYSETILSFVNNVRTKDGGTHEAGMKTAITKTFNDYARKVSLLKEKDKNLEGTD 237
Query: 323 YREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLV 382
+REGL+AV+SI +PE LQFEGQTK KLG+P AR VE++VSE+L+++L+ENG+++ L+
Sbjct: 238 FREGLAAVISIRIPENLLQFEGQTKSKLGTPQARSAVETVVSEQLSYYLIENGDLSQQLI 297
Query: 383 RKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGG 442
RKA+KAR+AR+AARKAR++SRNGKK KK+ LLSGKLTPAQSKNAK+NELYLVEGDSAGG
Sbjct: 298 RKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLTPAQSKNAKRNELYLVEGDSAGG 357
Query: 443 SAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYD 502
SAKQGRDRKFQAILPLRGKV+NTEKAK+ +++KNEEI+TM+YTIGAGVG +F++ D NYD
Sbjct: 358 SAKQGRDRKFQAILPLRGKVINTEKAKLQEVMKNEEISTMIYTIGAGVGPEFDIADCNYD 417
Query: 503 KIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAW 562
KIIIMTDADTDGAHIQTLLLTFFYRYM+PL EAG VY+ALPPLYK+S+G GK EKIAYAW
Sbjct: 418 KIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVYLALPPLYKLSRGIGKKEKIAYAW 477
Query: 563 TDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVS 622
TD EL + ++FGK ILQRYKGLGEMNA+QLW+TTM+P+TRTLIRV IDD A+AE+RVS
Sbjct: 478 TDDELVQVTKDFGKNYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVKIDDAAQAEKRVS 537
Query: 623 VLMGDKAAPRRQWIEDNVKFTLEE 646
VLMGDK PRR+WIE +V+FT EE
Sbjct: 538 VLMGDKVEPRRRWIESHVEFTFEE 561
>ref|YP_001728378.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20]
gb|ACA82934.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20]
Length = 687
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/638 (66%), Positives = 517/638 (81%), Gaps = 4/638 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y+ D+I++LEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL G+G++I+V I
Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
+ + +++V D GRGMP G H G PT +VI T+LHAGGKFGQGGY TSGGLHGVGSSVVN
Sbjct: 65 HDNNAITVQDFGRGMPVGMHESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS L+V I RDG +++ F +GG+PV TL+ +G A K+KSGT VTF PD IFS +
Sbjct: 125 ALSESLQVTIIRDGHQWQEDFIDGGQPVGTLRDLG-ATKAKSGTTVTFKPDPSIFSATVY 183
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
K++T+SERL+ESAFL+ VK LTD R +E +HYE G++ FV +LNEDKET+ PV+
Sbjct: 184 KYDTLSERLRESAFLMSGVKFILTDERVSPARVETYHYEKGLESFVNFLNEDKETIGPVM 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
EGQ + V+VA QYNDG+S+ +LSFVNNVRT+DGG+HE G ++A TKA N+YARK N
Sbjct: 244 TFEGQQEGLVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKAFNEYARKVN 303
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLKEKDKNLEGSD REGLSAV+S+ VPEQ LQFEGQTKDKLG+P AR IV+++V+E L
Sbjct: 304 LLKEKDKNLEGSDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVDAVVNETLGR 363
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGK-KNKKDKGLLSGKLTPAQSKNAK 428
FL+ENG+ +++RKAI+AR+AREAARKARD+SR GK K +KD+ LLSGKL PAQSKNA
Sbjct: 364 FLMENGDFGQNIIRKAIRAREAREAARKARDESRTGKTKGQKDR-LLSGKLAPAQSKNAA 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+NEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ADILKNEEI+T++Y IG
Sbjct: 423 RNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIYAIGG 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED ++KIIIMTDAD DGAHIQTLLLTFFY+YMRPL+EAG VYIALPPLY++
Sbjct: 483 GVGPDFKVEDTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVYIALPPLYRV 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
K E +AWT+ ELE + + L R+KGLGEMNA LWETTM+PETRTLIR
Sbjct: 543 KYASKKFED-QFAWTNDELESITSQNDARYELTRFKGLGEMNAPLLWETTMNPETRTLIR 601
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
V IDD AE+RV+ LMGDK PRR WIE NV FT++E
Sbjct: 602 VKIDDAVLAEKRVTTLMGDKVEPRRDWIEANVHFTMDE 639
>emb|CAK18891.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius]
Length = 637
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/617 (67%), Positives = 506/617 (82%), Gaps = 3/617 (0%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTD GLHHL++E+VDN+VDE L+G+G++I V IN+D S++VAD+GRGMPTG H
Sbjct: 1 MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTHRS 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS L VEI RDG ++ Q+F
Sbjct: 61 GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQFA 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STIDFKFNTISERLKESAFLLKNVKM 210
+GG P T L K K+GT VTF PD +IF S F F T+SERL+ESAFLL+N+K+
Sbjct: 121 HGGVPQTKLIK--KGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178
Query: 211 SLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGF 270
+L D R E +HYE G++ FV Y+NE KE L V +G + +V+V+ QYND +
Sbjct: 179 TLEDRRVGKERSEVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQYNDQY 238
Query: 271 SDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAV 330
S++I+SFVNNVRTKDGG+HE G K+A+T+ N+YAR+ LK KDKNLEG+D REGL+A+
Sbjct: 239 SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLTAI 298
Query: 331 LSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARD 390
+S+ +PE LQFEGQTK KLG+P AR V++IV+EKL F+L E G+++ LV+KAIKA+
Sbjct: 299 ISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKAQQ 358
Query: 391 AREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDR 450
AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +KNELYLVEGDSAGGSAK GRDR
Sbjct: 359 AREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDR 418
Query: 451 KFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDA 510
KFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGAGVG DFNL+D NY++IIIMTDA
Sbjct: 419 KFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNYNRIIIMTDA 478
Query: 511 DTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDL 570
DTDGAHIQ LLLTFF++YMRPLV AG VYIALPPLYK+ KGKGK +KIAYAWTD ELE L
Sbjct: 479 DTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEELEKL 538
Query: 571 RREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAA 630
+RE GKG +LQRYKGLGEMN +QLWETTM+PETRTLIRV IDD R+ +RVS LMGDK A
Sbjct: 539 QREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRVSTLMGDKVA 598
Query: 631 PRRQWIEDNVKFTLEEN 647
PRR+WIE +V+F ++E+
Sbjct: 599 PRREWIERHVQFGMQED 615
>emb|CAK18889.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius]
Length = 637
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/617 (66%), Positives = 506/617 (82%), Gaps = 3/617 (0%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTD GLHHL++E+VDN+VDE L+G+G++I V IN+D S++VAD+GRGMPTG H
Sbjct: 1 MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTHRS 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G PTV+VIFT+LHAGGKFGQGGYKTSGGLHGVG+SVVNALS L VEI RDG ++ Q+F
Sbjct: 61 GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQFA 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STIDFKFNTISERLKESAFLLKNVKM 210
+GG P T L K K+GT VTF PD +IF S F F T+SERL+ESAFLL+N+K+
Sbjct: 121 HGGVPQTKLIK--KGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178
Query: 211 SLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGF 270
+L D R E +HYE G++ FV Y+NE KE L V +G + +V+V+ QYND +
Sbjct: 179 TLEDRRVGKERSEVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQYNDQY 238
Query: 271 SDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAV 330
S++I+SFVNNVRTKDGG+HE G K+A+T+ N+YAR+ LK KDKNLEG+D REGL+A+
Sbjct: 239 SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLTAI 298
Query: 331 LSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARD 390
+S+ +PE LQFEGQTK KLG+P AR V++IV+EKL F+L E G+++ LV+KAIKA+
Sbjct: 299 ISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKAQQ 358
Query: 391 AREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDR 450
AREAARKAR+D+R+GKKNK+ LLSGKLTPAQSKN +KNELYLVEGDSAGGSAK GRDR
Sbjct: 359 AREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDR 418
Query: 451 KFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDA 510
KFQAILPLRGKV+NTEKA++ DI KNEEINT+++TIGAG+G DFNL+D NY++IIIMTDA
Sbjct: 419 KFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGMGNDFNLKDSNYNRIIIMTDA 478
Query: 511 DTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDL 570
DTDGAHIQ LLLTFF++YMRPLV AG VYIALPPLYK+ KGKGK +KIAYAWTD ELE L
Sbjct: 479 DTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEELEKL 538
Query: 571 RREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAA 630
+RE GKG +LQRYKGLGEMN +QLWETTM+PETRTLIRV IDD R+ +RVS LMGDK A
Sbjct: 539 QREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRVSTLMGDKVA 598
Query: 631 PRRQWIEDNVKFTLEEN 647
PRR+WIE +V+F ++E+
Sbjct: 599 PRREWIERHVQFGMQED 615
>ref|YP_001200319.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Streptococcus suis 98HAH33]
gb|ABP91919.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Streptococcus suis 98HAH33]
Length = 471
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/473 (88%), Positives = 448/473 (94%), Gaps = 2/473 (0%)
Query: 178 MPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEY 237
MPDD IFST DFKFNTI+ERLKESAFLLK V M+LTD R + EE+HYENGVQDFV Y
Sbjct: 1 MPDDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGEQ--EEYHYENGVQDFVSY 58
Query: 238 LNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
LNEDKETLTPV+Y EG+D FQV+VA+QYNDG+SDNILSFVNNVRTKDGG+HETGLK AI
Sbjct: 59 LNEDKETLTPVLYFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 118
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPE+HLQFEGQTKDKLGSPLARP
Sbjct: 119 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 178
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
+V+ IVS+KLTFFLLENGE+AS+LVRKAIKARDAREAARKARD+SRNGKKNKKDKGLLSG
Sbjct: 179 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 238
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KLTPAQSKN KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV+NT KAKMADILKNE
Sbjct: 239 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 298
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
EINTM+YTIGAGVG+DF +ED+NYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAG
Sbjct: 299 EINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 358
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWET 597
VYIALPPLYKMSKGKGK EKIAYAW+DGELEDLR++FGKG ILQRYKGLGEMNA+QLWET
Sbjct: 359 VYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 418
Query: 598 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF 650
TM+PETRTLIRVTI+DLARAERRVSVLMGDK PRR+WIEDNVKFTLEE+TVF
Sbjct: 419 TMNPETRTLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDNVKFTLEESTVF 471
>ref|YP_818830.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gb|ABJ62457.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 687
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/638 (66%), Positives = 515/638 (80%), Gaps = 4/638 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y+ D+I++LEGL+AVRKRPGMYIGSTD GLHHL++EIVDNAVDEAL G+G++I+V I
Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
+ + +++V D GRGMP G H G PT +VI T+LHAGGKFGQGGY TSGGLHGVGSSVVN
Sbjct: 65 HDNNAITVQDFGRGMPIGMHESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS L V I R+G +++ F NGG PV TL+ +G K +GT VTF PD IFS +
Sbjct: 125 ALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKT-KEPTGTTVTFKPDATIFSATVY 183
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
KF+ ++ERL+ES+FL+ VK +LTD R D +EE+HYE G++ FV +LNEDKET+ PV+
Sbjct: 184 KFDILAERLRESSFLMSGVKFTLTDERVDPVRVEEYHYEKGLEAFVGFLNEDKETIGPVM 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
EG+ + V+VA QYNDG+S+ +LSFVNNVRT+DGG+HE G ++A TKA N+YARK N
Sbjct: 244 TFEGEQESIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKAFNEYARKVN 303
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK+KDKNLEG+D REGLSAV+S+ VPEQ LQFEGQTKDKLG+P AR IV+S+V+E L
Sbjct: 304 LLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVDSVVNETLGR 363
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGK-KNKKDKGLLSGKLTPAQSKNAK 428
FL+ENG+ +L+RKA++AR+AREAAR+ARD+SR GK K KD+ LLSGKL PAQSKNA
Sbjct: 364 FLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDR-LLSGKLAPAQSKNAD 422
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
KNEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ADILKNEEI+T++Y IG
Sbjct: 423 KNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIYAIGG 482
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF +ED +++KIIIMTDAD DGAHIQTLLLTFFY+YMRPL+EAG VYIALPPLY++
Sbjct: 483 GVGTDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVYIALPPLYRV 542
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
K E +AWT+ ELE + + L R+KGLGEMNA LWETTMDPE+RTLIR
Sbjct: 543 KYSSKKIED-QFAWTNDELESITSQSDARYELTRFKGLGEMNAPLLWETTMDPESRTLIR 601
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
V IDD AE+RV+ LMGDK PRR+WIE NV FTL+E
Sbjct: 602 VKIDDAVLAEKRVTTLMGDKVDPRREWIEANVHFTLDE 639
>ref|YP_001843719.1| topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956]
dbj|BAG27239.1| topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956]
Length = 665
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/637 (64%), Positives = 513/637 (80%), Gaps = 2/637 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ +I++L+GL+AVRKRPGMYIGSTDA GLHHL++EIVDNAVDEALSGFGD+I V I
Sbjct: 8 YDASSIKILKGLEAVRKRPGMYIGSTDAHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQG-GYKTSGGLHGVGSSVVNA 130
D +++V D GRGMP G H G PT +VI TILHAGGKFGQ GYK+SGGLHGVG+SVVNA
Sbjct: 68 DNAITVQDHGRGMPVGMHESGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVVNA 127
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS+ L + I RD Y+++F +GG+P+ TLK++G + SGT VTF PD IFST +
Sbjct: 128 LSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKT-REGSGTTVTFKPDPTIFSTTVYD 186
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+ T++ RL+ESAFLLK VK++LTD R E F + NG++DFV YLNEDK+TL V
Sbjct: 187 YQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFANGIEDFVAYLNEDKDTLGKVFS 246
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
G +V+VA QYNDG+++N+LSFVNNVRT GG+HE G + A TK NDYARK L
Sbjct: 247 FTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTKTFNDYARKVGL 306
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LKE+DKNLEG+D REGL+AV+S+ +PE+ LQFEGQTK KLG+P AR IV++IVSE+L +
Sbjct: 307 LKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIVDTIVSEQLGYA 366
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L+EN ++A L++KA++AR AREAARKAR+ SR+GK+ + + LSGKLTPAQSKN+ KN
Sbjct: 367 LMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKLTPAQSKNSAKN 426
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
EL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ D++KNEE+NT++YT+GAGV
Sbjct: 427 ELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEELNTIIYTVGAGV 486
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
G +F +ED NYDKIIIMTDAD DGAHIQ LLLTFFY+YMRP++EAG VYIA+PPLY++ K
Sbjct: 487 GTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVYIAMPPLYRLQK 546
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
G+GK KI YAWT+ EL L ++ KG LQR+KGLGEMNA+QLWETTM+PETRTLIRV
Sbjct: 547 GRGKNTKITYAWTNDELTKLTKKGSKGTSLQRFKGLGEMNADQLWETTMNPETRTLIRVR 606
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
I+D AE+R++ LMG+K PRR+WI+ NV FT+ ++
Sbjct: 607 IEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDD 643
>ref|ZP_02077211.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991]
gb|EDP11086.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991]
Length = 643
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/636 (61%), Positives = 492/636 (77%), Gaps = 7/636 (1%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ +IQ+L+GL+AVRKRPGMYIGSTD GLHHL+WEIVDN++DEAL+G+GD I++ + +
Sbjct: 6 YDGSSIQILDGLEAVRKRPGMYIGSTDRRGLHHLVWEIVDNSIDEALNGYGDTIRITLEE 65
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKF-GQGGYKTSGGLHGVGSSVVNA 130
+ V D GRGMP HA G+P VQVI+T+LHAGGKF +GGYKTSGGLHGVG+SVVNA
Sbjct: 66 GDVICVEDHGRGMPVDMHASGVPAVQVIYTVLHAGGKFTSEGGYKTSGGLHGVGASVVNA 125
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS W+EV I RDG +++ RFE+GG V LK +G +K+G++V F D IFST +
Sbjct: 126 LSEWVEVTIHRDGKIHQIRFEDGGSKVGKLKVLGKT--NKTGSIVRFKADKHIFSTTKYS 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
F+ I+ER +E AFLL+ + + + D R +HY NG+ F++YL+EDK+T +
Sbjct: 184 FSQIAERAQEDAFLLEGLCLEVRDERVGKEREVRYHYANGLTAFMDYLHEDKQTFHQPVA 243
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
G D +V+ A QY D + +NI SFVN VRTKDGG+HETG K+A TK N+YAR+ +
Sbjct: 244 FSGMVNDIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTKVFNEYARRNGI 303
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
LK+KDKN EGSD REGL+ +LS+ +PE LQFEGQTK KLG+P A+ V+ +VSEKL+F+
Sbjct: 304 LKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAKNAVDQLVSEKLSFW 363
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
L EN E+A L++K +A AREAARKAR+D+R GK K + +LSGKL AQSK+A+K
Sbjct: 364 LEENKELALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILSGKLASAQSKDARKK 423
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
ELYLVEGDSAGGSAKQGRD ++QAILPLRGKVLNTEKA +A+I KNEE+NT+++ +GAGV
Sbjct: 424 ELYLVEGDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKNEELNTIIHALGAGV 483
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
GA+F+ ED +Y K+IIMTDADTDGAHIQTLLLTFFYRYM+ L+E G VYIALPPLYK+ K
Sbjct: 484 GANFHAEDASYHKVIIMTDADTDGAHIQTLLLTFFYRYMKELIEKGMVYIALPPLYKLQK 543
Query: 551 GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVT 610
GK +I YAW+D EL+ +R+ F KG LQRYKGLGEMNA+QLWETTM P TRTLI+VT
Sbjct: 544 GK----EIQYAWSDEELDRIRKTFPKGYTLQRYKGLGEMNADQLWETTMSPATRTLIQVT 599
Query: 611 IDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
IDD AE+RVSVLMGDKA RR WIEDNV FT+E+
Sbjct: 600 IDDAFLAEKRVSVLMGDKADVRRTWIEDNVSFTMED 635
>ref|ZP_01275026.1| Gram positive topoisomerase IV, subunit B [Lactobacillus reuteri
100-23]
gb|EAS87999.1| Gram positive topoisomerase IV, subunit B [Lactobacillus reuteri
100-23]
Length = 606
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/581 (64%), Positives = 472/581 (81%), Gaps = 2/581 (0%)
Query: 68 VINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQG-GYKTSGGLHGVGSS 126
I D +++V D GRGMP G HA G PT +VI T+LHAGGKFGQ GYKTSGGLHGVG+S
Sbjct: 1 TIEADNAITVQDHGRGMPVGMHASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGAS 60
Query: 127 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 186
VVNALS+ L + I RD Y++ F++GG+PV TLKK+G K+++GT V+F PD KIFST
Sbjct: 61 VVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKT-KAENGTTVSFKPDPKIFST 119
Query: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT 246
+ +NT++ RL+ESAFLLK +K++LTD R + F + +G+Q+FV YLNE K+ L
Sbjct: 120 TVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNEGKDVLG 179
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
+Y +G+ +VEVA QYNDG+S+++LSFVNNVRT DGG+HE G +SA TK N+YA+
Sbjct: 180 KTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNEYAK 239
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K LLK DKNLEGSD REGL+AV+S+ +PE+ LQFEGQTKDKLG+P AR IV++IVSE+
Sbjct: 240 KVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIVDAIVSEQ 299
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L + L+ENG+ A L+RKA+KAR+AREAARKAR+ +R GK+ K + LSGKLTPAQSKN
Sbjct: 300 LNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKN 359
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
AKKNEL+LVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAK+ D+LKNEE+NT++YT+
Sbjct: 360 AKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTV 419
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
GAG G++FN+ED NYDKIIIMTDAD DGAHIQ LLLTFFY+YMRP++EAG +YIALPPLY
Sbjct: 420 GAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLY 479
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 606
++ +G+G I YAWT+ EL L ++ GKGA LQR+KGLGEMNA+QLWETTM+PETRTL
Sbjct: 480 RLQRGRGAKTNITYAWTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPETRTL 539
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
I+V I+D AERRV+ LMG+K PRR+WIE+NV+FTL ++
Sbjct: 540 IQVRIEDAELAERRVTTLMGNKVEPRREWIEENVQFTLADD 580
>emb|CAK99042.1| dna topoisomerase iv subunit b protein [Spiroplasma citri]
Length = 645
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/636 (58%), Positives = 489/636 (76%), Gaps = 6/636 (0%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y++ +IQ+LEGLDAVRKRPGMYIGSTD GLHHL+WEI+DN++DEAL+G+ ++I ++I K
Sbjct: 10 YDESSIQILEGLDAVRKRPGMYIGSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYK 69
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
+ ++ VAD+GRG+PTG H+ G T +VIF++LHAGGKFG GYKT+GGLHGVGSSVVNAL
Sbjct: 70 NNAIMVADNGRGVPTGVHSSGKSTPEVIFSVLHAGGKFGGDGYKTAGGLHGVGSSVVNAL 129
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
SA +V I RD V+ +F NGG+ L K +K+GT VTF+PD KIF IDF F
Sbjct: 130 SATFDVTIYRDHKVWSIKFANGGQVKEPLTK--IGTTTKTGTTVTFLPDHKIFKVIDFSF 187
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
+TISER++ESAFL VK++LTD R D + + + NG+++F+ Y+NEDK+++TP+I +
Sbjct: 188 STISERIRESAFLNSGVKLTLTDQRTDKKV--SYLFNNGLEEFITYMNEDKKSITPIIML 245
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
+G ++ +VE+ALQY+ F++N+LSF NNV+T +GGSH G ++ +TK +NDYARK LL
Sbjct: 246 KGVEKQIEVEIALQYSTEFNENLLSFANNVKTSEGGSHVVGFRTGLTKVINDYARKEGLL 305
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
KEKDKNL+ D REGL+ ++S+ +PE +Q+EGQTK KLG+ AR VE+IVS++ F+L
Sbjct: 306 KEKDKNLDSVDTREGLTTIVSVKIPENLIQYEGQTKGKLGTYEARVAVETIVSKQFGFWL 365
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
EN A ++ KA+ AR+ RE ARKAR+ +RN KK LL+GKLTPAQ++N NE
Sbjct: 366 TENKTNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNE 425
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
++LVEGDSAGGSAK GRDR+FQAILPLRGKV+N EKAK+ D++ NEEIN M+ IGAGVG
Sbjct: 426 IFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEKAKLQDLMNNEEINVMINAIGAGVG 485
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
F++ D NY K+IIMTDADTDGAHIQTLLLTFFYRYMRPL+E VY+ALPPL+K++
Sbjct: 486 NGFDINDANYGKVIIMTDADTDGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITST 545
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
K K I YAW + EL++ +F LQRYKGLGEMNA QLWETTM+P+TR LI VTI
Sbjct: 546 KNK--HIEYAWDETELKNKLSQFHGKFELQRYKGLGEMNAEQLWETTMNPQTRQLILVTI 603
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
DD AERR+ LMGD A R+ WI++NVKFTLE++
Sbjct: 604 DDAVMAERRIVTLMGDDAKKRKYWIDENVKFTLEDD 639
>ref|YP_001620377.1| DNA topoisomerase IV, subunit B [Acholeplasma laidlawii PG-8A]
gb|ABX81001.1| DNA topoisomerase IV, subunit B [Acholeplasma laidlawii PG-8A]
Length = 651
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/638 (59%), Positives = 490/638 (76%), Gaps = 10/638 (1%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY++ +IQ+LEGL+AVRKRPGMYIGSTD GLHHL+WEIVDNA+DE L+GFG +I V I
Sbjct: 5 NYDETSIQILEGLEAVRKRPGMYIGSTDHRGLHHLVWEIVDNAMDEVLAGFGSEITVTIK 64
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFG-QGGYKTSGGLHGVGSSVVN 129
D ++ V D GRGMP +H G+PT QVIFT+LHAGGKFG G YK +GGLHGVGSSVVN
Sbjct: 65 PDNAIEVLDDGRGMPYKKHTSGVPTTQVIFTVLHAGGKFGGDGAYKVAGGLHGVGSSVVN 124
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS+ LEV + +DG ++RQRFENGGK + +K+G K+GT V F PD IFST +
Sbjct: 125 ALSSVLEVTVYKDGGIFRQRFENGGKKIFNQEKIGDT--KKTGTQVYFKPDPSIFSTTLY 182
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
++TI ERLKESA+L+K +K++L D R + E F ++ G++ +VE++N K L V
Sbjct: 183 NYDTIKERLKESAYLIKGLKINLIDERNNKK--ETFKFDEGIKAYVEFMNTGKNALHDVT 240
Query: 250 YMEG-----QDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDY 304
+EG +D +VEVALQY D +S+NI+SFVNNVRTKDGG+HE G KSA+TK +NDY
Sbjct: 241 DVEGTFNTAKDSAIEVEVALQYTDSYSENIISFVNNVRTKDGGTHEIGFKSALTKVINDY 300
Query: 305 ARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVS 364
ARK N +KEKD N++G D REGL+A++S+ +PE L+FEGQTK KLG+P AR +E++
Sbjct: 301 ARKYNHIKEKDSNIDGVDIREGLTAIVSLRIPETVLEFEGQTKGKLGTPEARNALETVFY 360
Query: 365 EKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQS 424
EK FL EN + A ++ KA+ A +AREAARKAR+++R GKK K + +LSGKLTPAQ
Sbjct: 361 EKFNTFLEENSDAALSIITKAVAAANAREAARKAREEARAGKKRSKKEVILSGKLTPAQG 420
Query: 425 KNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVY 484
K+ NEL+LVEGDSAGGSAKQGR+R+FQAILPLRGKV+NTE+ ILKNEEI+TM+Y
Sbjct: 421 KDKSINELFLVEGDSAGGSAKQGRNRRFQAILPLRGKVINTERTNTETILKNEEISTMIY 480
Query: 485 TIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPP 544
TIGA G DF+++ NY+K+IIMTDAD DGAHIQTLLLTFF+RYMRPL+EAG +YIA PP
Sbjct: 481 TIGADFGEDFDIKKCNYNKVIIMTDADDDGAHIQTLLLTFFFRYMRPLIEAGRLYIAQPP 540
Query: 545 LYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETR 604
YK++ K K E+ YAW+D +L++ G+ ++ R+KGLGEMN QLWETTM+PE+R
Sbjct: 541 FYKVTYKKNKKEETVYAWSDEDLKETLESIGQNYMITRFKGLGEMNFYQLWETTMNPESR 600
Query: 605 TLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TLI+VTIDDL +++ +SVLMGD+ APRR+WIE NV F
Sbjct: 601 TLIQVTIDDLNVSDKHISVLMGDQVAPRREWIEANVDF 638
>ref|ZP_02851177.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. JDR-2]
gb|EDS48958.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. JDR-2]
Length = 656
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/643 (60%), Positives = 495/643 (76%), Gaps = 17/643 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY D IQVLEGL AVRKRPGMYIGST ++GLHHL+WEIVDNAVDE L+ F I V ++
Sbjct: 17 NYEADDIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKFCTAIDVTLH 76
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
K+G+V+V D+GRG+PTG H GIPT QV++TILHAGGKFG GGYK SGGLHGVG+SV NA
Sbjct: 77 KNGAVTVQDNGRGIPTGMHKTGIPTPQVVYTILHAGGKFGGGGYKKSGGLHGVGASVTNA 136
Query: 131 LSAWLEVEITRDGSVYRQRFE---------NGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
LS WLEVEI RDG +++ RFE + G+PVT L+ G +++GT VTF PD
Sbjct: 137 LSEWLEVEIFRDGKIHKMRFEYWVDNKGKEHVGEPVTGLEITGNT--NRTGTKVTFKPDG 194
Query: 182 KIFST-IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNE 240
++F ++T++ERL+E AFL +K+++ D R I FHYE G + FV+YLN+
Sbjct: 195 RVFQGGTSLNYDTLAERLQEIAFLNSGLKVTIKDDRSGKEDI--FHYEGGARQFVQYLND 252
Query: 241 DKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA 300
DK L V++ G+ + +VEVALQYNDG+++ I SFVN++ T+ GG+HETG K+A T+
Sbjct: 253 DKTVLHDVVHFAGEKDEIEVEVALQYNDGYTETIASFVNSIPTRGGGTHETGFKTAYTRV 312
Query: 301 MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVE 360
MN+YARK LLKEK+KNLEG+D REG+ +V++I + E ++F GQTKD+LGS AR V+
Sbjct: 313 MNEYARKAGLLKEKEKNLEGNDLREGMMSVINIKMSE--VEFVGQTKDQLGSASARSAVD 370
Query: 361 SIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLT 420
++VS+K+ FL EN +VA L++KA++A AREAARKAR++ R+GKK K + L+GKLT
Sbjct: 371 AVVSDKMQVFLEENPQVAQMLLKKAVQASKAREAARKAREEIRSGKK-KSESSNLNGKLT 429
Query: 421 PAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEIN 480
PAQSK+ +NEL++VEGDSAGGSAKQGRD K QAILPL+GK +N EKAK+ DILKNEE
Sbjct: 430 PAQSKDFSRNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMNPEKAKLLDILKNEEYK 489
Query: 481 TMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540
++ IGAGVG +F+ E+ NY+KIIIMTDADTDGAHIQ LLLTFFYRYM+PL++ G VYI
Sbjct: 490 AIISAIGAGVGPEFDAEECNYNKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDTGRVYI 549
Query: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD 600
A PPLYK+++ GK E + YAWTD +L++ +EFGK LQRYKGLGEMN +QLWETTMD
Sbjct: 550 AQPPLYKITRKSGKLETVRYAWTDEQLQNYLKEFGKNFELQRYKGLGEMNPDQLWETTMD 609
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
PETRTL++V I+D A+AERRVS LMGDK PR++WI +NV FT
Sbjct: 610 PETRTLLQVQIEDAAKAERRVSALMGDKVDPRKRWIIENVDFT 652
>ref|YP_001256324.1| Topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
emb|CAL58880.1| Topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
Length = 641
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/638 (57%), Positives = 474/638 (74%), Gaps = 6/638 (0%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+NY+ +IQ L+GL+AVRKRPGMYIGSTD GLHHLIWEIVDN++DEAL+G ++I V++
Sbjct: 7 SNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGETNEIIVIL 66
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KDGSV V+D+GRG+P G+ G V+++FT LHAGGKF +G YKTSGGLHGVGSSVVN
Sbjct: 67 KKDGSVVVSDNGRGIPVGKTPSGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS L+ + RD +Y FENG V +G+ +K GT + F P+ +IF F
Sbjct: 127 ALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGST--NKRGTSIQFWPNYEIFKKAKF 184
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
F TI+ERL+ES+FL+ N+ + L D + + EEF Y NG++ FVE++N+ K L V
Sbjct: 185 NFETIAERLRESSFLISNLSIKLIDEQSERS--EEFKYSNGIKAFVEFINDSKTALFNVY 242
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
+ + ++E QY DGF++ ILSFVNNV+T+DGG+HE GLKSAITK ND+A
Sbjct: 243 SFKQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDFALDEK 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
+LK K+ +G D REGL+ VLS+ +PE++L+F QTKDKLG+P A+ VE VS+ L
Sbjct: 303 VLKGKN-TFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSAVEEAVSKNLKT 361
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
++ EN ++A ++ K +A D+RE+ARKAR ++R K K+K +LSGKLTPAQ+KN K+
Sbjct: 362 WITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGKLTPAQTKNVKE 421
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
EL+LVEGDSAGGSAK GRDR++QAILPLRGKV+NTEKA++ DILKNEEINT++ IGAG
Sbjct: 422 KELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEEINTIINAIGAG 481
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF++ I YDK+IIMTDADTDGAHIQ LLLTFF+ +MR L+E G VYIALPPL+K++
Sbjct: 482 IGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFIHMRRLIEEGKVYIALPPLFKLT 541
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
K K E I YAW + EL++L + K A +QRYKGLGEMNA+QLWETTM+PETRTLI+V
Sbjct: 542 INKAKKE-ILYAWDENELKELLQTKMKNAEVQRYKGLGEMNADQLWETTMNPETRTLIQV 600
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
I D A AERRVS LMGD R++WI NV FTLE++
Sbjct: 601 RIQDAALAERRVSTLMGDNVESRKEWINKNVNFTLEDD 638
>ref|ZP_02328278.1| DNA topoisomerase IV subunit B [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 657
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/644 (60%), Positives = 496/644 (77%), Gaps = 16/644 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
++Y+ DAIQVLEGL AVRKRPGMYIGST ++GLHHL+WEIVDNAVDE L+ I V I
Sbjct: 16 SDYDADAIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKHCSKIDVTI 75
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
+K+GS++V D+GRG+PTG H MGIPT QV+FTILHAGGKFG GGYK SGGLHGVG+SV N
Sbjct: 76 HKEGSITVYDNGRGIPTGMHKMGIPTPQVVFTILHAGGKFGGGGYKKSGGLHGVGASVTN 135
Query: 130 ALSAWLEVEITRDGSVYRQRFE---------NGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
ALS WLEVEI RDG +Y+QRFE + G+PVT+L+ +G SKSGT +TF PD
Sbjct: 136 ALSEWLEVEIFRDGQIYKQRFEYWVDEAGKEHVGEPVTSLEIIGKT--SKSGTKITFKPD 193
Query: 181 DKIFST-IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
++F I F ++T++ERL+E AFL +++ L D R + F Y G +FV +LN
Sbjct: 194 VRVFKGGIQFNYDTLAERLQELAFLNSGLEIFLKDERTGSE--DHFLYSGGASEFVRFLN 251
Query: 240 EDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITK 299
E K+ L VI+ E + D +VE+A+QYN G+++ ++SFVN++ T+ GG+HETG K+A T+
Sbjct: 252 EGKDVLHDVIHFEAEKDDIEVEIAMQYNIGYTETLVSFVNSIPTRGGGTHETGFKTAFTR 311
Query: 300 AMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIV 359
MN+YARK ++LKEKDKNLEG+D REGL AV++I + + ++F GQTKD+LGS AR V
Sbjct: 312 VMNEYARKNSILKEKDKNLEGTDLREGLMAVINIKMSD--VEFVGQTKDQLGSATARSAV 369
Query: 360 ESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKL 419
+++VSEK+ FL EN +VA +++KA+++ AREAARKAR++ R+GKK + + L+GKL
Sbjct: 370 DAVVSEKMAVFLEENPQVAQMMLKKAVQSAKAREAARKAREEVRSGKKGRSESSNLNGKL 429
Query: 420 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEI 479
TPAQSK+ +NEL++VEGDSAGGSAKQGRD K+QAILPL+GK +N EKAK+ DILKN+E
Sbjct: 430 TPAQSKDVTRNELFIVEGDSAGGSAKQGRDSKYQAILPLKGKPMNPEKAKLLDILKNDEY 489
Query: 480 NTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY 539
++ IGAGVG++F L + NY+KIIIMTDADTDGAHIQ LLLTFFYRYM+PLV+AG VY
Sbjct: 490 KAIISAIGAGVGSEFELSETNYNKIIIMTDADTDGAHIQVLLLTFFYRYMKPLVDAGKVY 549
Query: 540 IALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTM 599
IA PPLYK+SK GK + YAWTD EL L ++ GK LQRYKGLGEMN QLWETTM
Sbjct: 550 IAQPPLYKISKKSGKRTSVHYAWTDEELSKLTQKAGKNFELQRYKGLGEMNPEQLWETTM 609
Query: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
+P TR L++V I+D A+AERRVS LMGDK PR++WI DNV FT
Sbjct: 610 NPGTRILLQVQIEDAAKAERRVSTLMGDKVDPRKRWIIDNVDFT 653
>ref|ZP_01697833.1| DNA topoisomerase, type IIA, subunit B, region 2 [Bacillus
coagulans 36D1]
gb|EAY42927.1| DNA topoisomerase, type IIA, subunit B, region 2 [Bacillus
coagulans 36D1]
Length = 525
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/522 (69%), Positives = 435/522 (83%), Gaps = 6/522 (1%)
Query: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDD 64
K+ I YNDDAIQVLEGL+AVRKRPGMYIGSTDA GLHHL++EIVDNAVDEALSG+G+
Sbjct: 3 KKQNILEYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNAVDEALSGYGNH 62
Query: 65 IKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 124
I V I+KD S+SV D GRGMP G H +G PT +VI TILHAGGKFGQGGYKTSGGLHGVG
Sbjct: 63 IIVNIHKDNSISVQDFGRGMPVGMHKLGKPTTEVILTILHAGGKFGQGGYKTSGGLHGVG 122
Query: 125 SSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF 184
+SVVNALS WL V I RDG VY QRF +GGKP TTL+K T +K+GT + F PD IF
Sbjct: 123 ASVVNALSEWLVVTIHRDGYVYEQRFRDGGKPETTLEK--TGKTNKTGTTIHFKPDPSIF 180
Query: 185 STIDFKFNTISERLKESAFLLKNVKMSLTDLR-GDDPIIEEFHYENGVQDFVEYLNEDKE 243
STI F ++T+ ERL+ESAFLLK +K+ +TD R G + FHYENG++ FV+YLNE KE
Sbjct: 181 STITFNYDTLCERLRESAFLLKGLKIEITDERFGRHDL---FHYENGIEAFVQYLNEGKE 237
Query: 244 TLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMND 303
L PV+++EG+ + E A Q+NDGFS+NILSFVNNVRTKDGG+HE G K+A+T+ +ND
Sbjct: 238 VLHPVVFIEGETNGIEAEFAFQFNDGFSENILSFVNNVRTKDGGTHEAGAKTALTRVVND 297
Query: 304 YARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIV 363
YARKT LLKEKDKNLEG+D REGLSA++S+ +PE+ LQFEGQTK KLG+ AR V++IV
Sbjct: 298 YARKTGLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDTIV 357
Query: 364 SEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQ 423
SE L++FL EN + ++ L+RKAIKA AREAARKAR+++R+GKK KK + LSGKLTPAQ
Sbjct: 358 SEHLSYFLEENPDTSNLLIRKAIKASQAREAARKAREEARSGKKRKKSETTLSGKLTPAQ 417
Query: 424 SKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMV 483
S+N ++NELYLVEGDSAGGSAKQGRDRKFQA+LPLRGKV+NTEKAK+ADI KNEEINT++
Sbjct: 418 SRNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 477
Query: 484 YTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFF 525
YTIGAGVG +FNLED+NYDK+IIMTDADTDGAHIQ LLLT F
Sbjct: 478 YTIGAGVGPEFNLEDVNYDKVIIMTDADTDGAHIQVLLLTSF 519
>ref|NP_326203.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pulmonis UAB CTIP]
emb|CAC13545.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pulmonis]
Length = 642
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/639 (55%), Positives = 475/639 (74%), Gaps = 7/639 (1%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
++ Y D +++L+GL+AVRKRPGMYIGSTD GLHHL+WEI DNAVDEAL+G+ IKV
Sbjct: 1 MSKYTVDDLKMLKGLEAVRKRPGMYIGSTDINGLHHLVWEIFDNAVDEALAGYASIIKVS 60
Query: 69 INKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+ K+ S+ V D+GRG+P +H+ G V+++FT LHAGGKF +G Y+TSGGLHGVGSSVV
Sbjct: 61 LTKNQSIRVEDNGRGIPVEKHSSGKSGVELVFTELHAGGKFSEGAYRTSGGLHGVGSSVV 120
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS L V + +DG YR +FENG V KVG P +K GT+V F+P+ +IF
Sbjct: 121 NALSKELTVSVFKDGFEYRTKFENGDTIVEKTHKVG--PSNKKGTIVEFLPNYEIFKRAQ 178
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F TISERL+E++FL+ N+K+ D + + E F+YENG++ FV+++N K+TL V
Sbjct: 179 FLPETISERLREASFLIPNLKIVFYD--ENQNLRETFNYENGIEAFVDFINNGKKTLNKV 236
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
+ ++ ++ A QYND +S+ I+SFVNNV+T+DGG+HE KSA TK +NDYA +
Sbjct: 237 VSFSETKKNIELSCAFQYNDDYSETIISFVNNVKTRDGGTHEAAFKSAFTKTLNDYAIEK 296
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
+LK K EGSD+REGL+A++S+ +PE L+F GQTKDKLG+ A+ +VE IVS+ L
Sbjct: 297 KILK-GGKTFEGSDFREGLTAIISLKIPESILEFVGQTKDKLGTIEAKNVVEEIVSQNLK 355
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L E + A + K KA +AR AARKAR+++R K K+ +LSGKLTPAQSKN K
Sbjct: 356 YWLNEKKQEAEKVFNKFKKAYEARIAARKARNEARTLKSKMKETKILSGKLTPAQSKNPK 415
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+NE++LVEGDSAGGSAK GR+R+FQAILPLRGKV+NTEK+++ DILKNEEI+T++ +
Sbjct: 416 ENEIFLVEGDSAGGSAKSGRNRRFQAILPLRGKVINTEKSRLIDILKNEEISTIINALNT 475
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF ++++ Y KIIIMTDADTDGAHIQ LLLTFF+RYM L+E G VY+ALPPL+K+
Sbjct: 476 GVGEDFEIKNLKYHKIIIMTDADTDGAHIQVLLLTFFFRYMHELIEKGMVYVALPPLFKV 535
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ K KIAYAW + EL+++ + K +QRYKGLGEMNA+QLWETTM+PETR+L++
Sbjct: 536 TFKNDKKNKIAYAWDENELKEIVK--NKSVEIQRYKGLGEMNADQLWETTMNPETRSLVK 593
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
+TI D A ERRVS LMG+ R++WI NVKFTLE++
Sbjct: 594 ITIQDAAIVERRVSTLMGENVEIRKEWINKNVKFTLEDD 632
>ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
gb|AAT75666.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
Length = 647
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/636 (55%), Positives = 465/636 (73%), Gaps = 8/636 (1%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y++ AIQVLEGL+AVRKRPGMYIGSTD GLHHL+WEIVDN++DEAL+G+ +I V + K
Sbjct: 7 YDESAIQVLEGLEAVRKRPGMYIGSTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEK 66
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
+GSV+VAD+GRG+P G H+ G PT +VIF++LHAGGKFG GYKTSGGLHGVGSSVVNAL
Sbjct: 67 NGSVTVADNGRGVPIGMHSTGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNAL 126
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S V I RD V F NGGK L +VGT +K+GTVV F+PDD IF+T F F
Sbjct: 127 SKKFNVTIYRDKKVNEIEFTNGGKLNIPLTEVGTT--NKTGTVVNFLPDDSIFNTTKFNF 184
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
TISERLKESA L +K++++D D + E+ +ENG+ +FV+ L+ + +T + +
Sbjct: 185 TTISERLKESALLNSGLKITISDKVNDKFV--EYQFENGLVEFVKELSSEFTHITDPVVI 242
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
G+ + E+ +QY + F++ IL F NNV+T DGG+H TG K+ + +A+NDYA+ +L
Sbjct: 243 TGESKRIASEICIQYTEDFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKIL 302
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
K+KD L+ +D REGL A++++ +PE +++EGQTK KLG+P A+ VE + + + F+L
Sbjct: 303 KDKDPRLDSNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWL 362
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
+EN A+ ++ KA+ AR ARE ARKAR R+ K K + +L GKLTPAQ + + NE
Sbjct: 363 IENKVPATKIIEKAMLARRAREEARKARQAIRDSKGKKTTRAML-GKLTPAQGRKKEINE 421
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAK GRDR FQAILPLRGKV+N+EKAK+ +++KNEEI T++ IGAG+G
Sbjct: 422 LYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIG 481
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
DF++ DINY K+IIMTDADTDGAHIQTLLLTFFYRYM+ L+ HV+IALPPLYK++
Sbjct: 482 QDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFS 541
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
K Y W + EL D + K +QRYKGLGEMNA+QLWETTM+P R LI VTI
Sbjct: 542 D---RKFIYLWDEQELADFAKTATKKYEIQRYKGLGEMNADQLWETTMNPAQRKLIVVTI 598
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
+D AE+ LMG+ A R+ WI++NVKFTLE+N
Sbjct: 599 EDALMAEKSFRTLMGEDAEKRKVWIQENVKFTLEDN 634
>ref|YP_001198124.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Streptococcus suis 05ZYH33]
gb|ABP89724.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
subunit [Streptococcus suis 05ZYH33]
Length = 387
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/387 (91%), Positives = 376/387 (97%)
Query: 264 LQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDY 323
+QYNDG+SDNILSFVNNVRTKDGG+HETGLK AITKAMNDYARKTNLLKEKDKNLEGSDY
Sbjct: 1 MQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDY 60
Query: 324 REGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVR 383
REGLSAVLSILVPE+HLQFEGQTKDKLGSPLARP+V+ IVS+KLTFFLLENGE+AS+LVR
Sbjct: 61 REGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVR 120
Query: 384 KAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGS 443
KAIKARDAREAARKARD+SRNGKKNKKDKGLLSGKLTPAQSKN KNELYLVEGDSAGGS
Sbjct: 121 KAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGS 180
Query: 444 AKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDK 503
AKQGRDRKFQAILPLRGKV+NT KAKMADILKNEEINTM+YTIGAGVG+DF +ED+NYDK
Sbjct: 181 AKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTIEDVNYDK 240
Query: 504 IIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWT 563
IIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAG VYIALPPLYKMSKGKGK EKIAYAW+
Sbjct: 241 IIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKAEKIAYAWS 300
Query: 564 DGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSV 623
DGELEDLR++FGKG ILQRYKGLGEMNA+QLWETTM+PETRTLIRVTI+DLARAERRVSV
Sbjct: 301 DGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSV 360
Query: 624 LMGDKAAPRRQWIEDNVKFTLEENTVF 650
LMGDK PRR+WIEDNVKFTLEE+TVF
Sbjct: 361 LMGDKVEPRRKWIEDNVKFTLEESTVF 387
>ref|NP_758034.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2]
dbj|BAC44438.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2]
Length = 631
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/638 (54%), Positives = 478/638 (74%), Gaps = 9/638 (1%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
+N+Y + I+VLEGLD VRKRPGMYIGSTD GLHHLIWEI+DNAVDE ++G D IK+
Sbjct: 1 MNSYKESDIKVLEGLDPVRKRPGMYIGSTDQRGLHHLIWEILDNAVDEVMAGVCDTIKMT 60
Query: 69 INKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127
+++DGS SV D+GRG+PTG H + TV +FT LHAGGKF YK SGGLHGVGSSV
Sbjct: 61 LHRDGSFSVEDNGRGIPTGIHPKTKMSTVDTVFTTLHAGGKFSDSAYKMSGGLHGVGSSV 120
Query: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187
VNALS++L V + RDG +Y ++ +GGK +G+ +++GT V F+PD IF I
Sbjct: 121 VNALSSYLTVTVKRDGKIYESQYVDGGKIKQKSHIIGST--NRTGTTVRFLPDASIFKNI 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F + I ER++E++FL K +K+ + ++ F +NG+ +FV +++ +++T++
Sbjct: 179 AFSPSIIFERVQETSFLFKGLKIIFENEYTRK--VDTFLAQNGISEFVSFISSNQKTISE 236
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
VIY+EG++QD + E+A QYND S+ +SF N+V+TK+GG+HETG K+A+T+ +NDYARK
Sbjct: 237 VIYIEGKEQDIEAEIAFQYNDSNSETFVSFANSVKTKEGGTHETGFKTALTETLNDYARK 296
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
LLK+K+KN EGSD+REGL V+S+ +PE+ + +EGQTK+KL + A +V++IV K
Sbjct: 297 WKLLKDKEKNFEGSDFREGLVCVISVRIPERLISYEGQTKNKLFTQEAYSVVKNIVKTKF 356
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
T++L EN + A ++ KA +R+AR AA+KAR++ + K KK+K +LSGKLTP QSK+
Sbjct: 357 TYWLEENKKDAKTIIEKAYLSREARIAAKKAREEVKQLKGQKKEK-ILSGKLTPCQSKDK 415
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
EL+LVEGDSAGGSAK GRD+++QAILPL+GKV+N EKA + D+LKNEEI+T++ +IG
Sbjct: 416 TITELFLVEGDSAGGSAKLGRDKRYQAILPLKGKVINVEKAMLKDLLKNEEISTIISSIG 475
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
+G+DF L D+ Y KIIIMTDADTDGAHI+ LLLTFFYRYM+ L+E+G VYIALPPLYK
Sbjct: 476 GSIGSDFCLPDVKYSKIIIMTDADTDGAHIRILLLTFFYRYMKELIESGRVYIALPPLYK 535
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+ K K E Y W D ELE+L+++ +QRYKGLGEMNA+QLW+TTMDPETR LI
Sbjct: 536 FTNTKNKKE--FYVWEDYELEELKKD-NPNYEIQRYKGLGEMNADQLWDTTMDPETRQLI 592
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLE 645
+V+I+D A ERRVS+LMGD ++ R++WI DNV F +E
Sbjct: 593 QVSIEDAALTERRVSILMGDDSSKRKEWITDNVDFEME 630
>ref|ZP_02852009.1| DNA gyrase, B subunit [Natranaerobius thermophilus JW/NM-WN-LF]
gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 640
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/644 (54%), Positives = 465/644 (72%), Gaps = 14/644 (2%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M K + NY++ IQVLEGL+AVRKRPGMYIGSTD GLHHL+ E+VDN++DEA++G
Sbjct: 1 MEENKFVNEQNYDESQIQVLEGLEAVRKRPGMYIGSTDERGLHHLVHEVVDNSIDEAMAG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 119
+ DDI++ + V V D+GRG+P H + PT++VI T LHAGGKF YK SGG
Sbjct: 61 YCDDIRIKLEPGNKVRVTDNGRGIPVKDHPKIKKPTLEVIMTYLHAGGKFSNDSYKVSGG 120
Query: 120 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 179
LHGVG SVVN LS W+ V++ RDG VY+Q +E G P T +K++G + K GT + F+P
Sbjct: 121 LHGVGISVVNGLSKWIRVKVYRDGKVYQQEYEKG-YPKTEIKEIGES--DKRGTEIIFLP 177
Query: 180 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
D++IF T++F + + RL++ AFL + V ++++D R D+ E F YE G++ FVEYLN
Sbjct: 178 DEEIFETVEFDYQVLRNRLQQLAFLNRGVSITISDEREDEFKEEHFKYEGGIKSFVEYLN 237
Query: 240 EDKETL-TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
E+K TL TP +Y+EG+ + ++EVA+QYNDG+ + I S+ NN+ T +GG+HE+G K ++T
Sbjct: 238 ENKTTLFTPPVYIEGEQEGCKLEVAIQYNDGYQEMIHSYANNINTHEGGTHESGFKISLT 297
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ +NDYAR+ NLLK DKNL G D REG++A++S+ V + QFEGQTK KLG+ R I
Sbjct: 298 RTVNDYARRHNLLKNGDKNLTGEDIREGITAIISVKVEDP--QFEGQTKTKLGNSEVRRI 355
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
VE IVSE L +L EN V +V KAI A AREAARKA++ +R +KN + L GK
Sbjct: 356 VEGIVSEHLESYLEENPAVGKKIVNKAINASRAREAARKAKELTR--RKNALEVTALPGK 413
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
L +K+A K+ELYLVEGDSAGGSAKQGRDR+FQAILPLRGK+LN EKA+ IL NEE
Sbjct: 414 LADCTTKDASKSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARFDKILANEE 473
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I T++ IG G+G +F++ Y +IIIMTDAD DGAHI+TLLLTFFYRYMRPL+E G+V
Sbjct: 474 IKTIITAIGTGIGEEFDISKARYQRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYV 533
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWET 597
YIA PPLY M K KGK Y + D EL++L E GK I LQRYKGLGEMN QLWET
Sbjct: 534 YIAQPPLY-MVKKKGKH---YYTFNDHELDNLLEEIGKEGISLQRYKGLGEMNPTQLWET 589
Query: 598 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
TM+PE+RT++ V + D A++ +VLMG+K +PRR++IE+N +
Sbjct: 590 TMNPESRTVLNVNLQDAIEADKIFTVLMGEKVSPRRKFIEENAR 633
>gb|ABW84388.1| DNA topoisomerase IV subunit B [Spiroplasma sp. CRAB]
gb|ABW84391.1| DNA topoisomerase IV subunit B [Spiroplasma sp. SHRIMP]
Length = 568
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/574 (58%), Positives = 441/574 (76%), Gaps = 6/574 (1%)
Query: 28 KRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTG 87
KRPGMYIGSTD GLHHL+WEIVDN++DEAL+GF +I ++I+K+ ++V D+GRG+P G
Sbjct: 1 KRPGMYIGSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIG 60
Query: 88 QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYR 147
+HA G T +VIF++LHAGGKFG GYKTSGGLHGVGSSVVNALS+ +V I RD +
Sbjct: 61 KHASGKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKISN 120
Query: 148 QRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKN 207
+F NGGK L +G+ + +GT V F+PD +IF IDF F+TISER++ESAFL
Sbjct: 121 IKFNNGGKLAQKLTTIGST--ATTGTTVYFVPDPEIFKVIDFSFSTISERIRESAFLNSG 178
Query: 208 VKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYN 267
+K++L D R D + E+ + NG+++F+ Y+NE K+ +TP+I +G ++D VE+ALQY+
Sbjct: 179 LKITLQDERTDKYV--EYLFNNGLEEFITYMNEGKKPITPIITFKGIEKDIDVEIALQYS 236
Query: 268 DGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGL 327
F++N+LSF NNV+T DGGSH G ++ +TK +N+YARK LLKEKDKNL+ +D REGL
Sbjct: 237 TEFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTREGL 296
Query: 328 SAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIK 387
+A++S+ +PE +Q+EGQTK KLG+ A+ VE+IV++++ F++LEN A ++ KA+
Sbjct: 297 TAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNAYAIIEKALL 356
Query: 388 ARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQG 447
AR A+E ARKAR+ +R K+ + LL+GKLTPAQ+KN K NEL+LVEGDSAGGSAK G
Sbjct: 357 ARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAKSG 416
Query: 448 RDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIM 507
RDRKFQAIL LRGKV+N EKAK+ D++ NEEIN M++ IGAG G +F+LED NY KIIIM
Sbjct: 417 RDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNNFDLEDANYGKIIIM 476
Query: 508 TDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGEL 567
TDADTDGAHIQTLLLTFFYR+MRPL+E VYIALPPL+K++ KT+K++YAW + EL
Sbjct: 477 TDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKIT--NLKTKKVSYAWDENEL 534
Query: 568 EDLRREFGKGAILQRYKGLGEMNANQLWETTMDP 601
+ + LQRYKGLGEMNA QLWETTMDP
Sbjct: 535 KTKLKHLKDKFELQRYKGLGEMNAEQLWETTMDP 568
>ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
gb|EDT49412.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13
str. ATCC 33698]
Length = 642
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/636 (53%), Positives = 470/636 (73%), Gaps = 9/636 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ AI++LEGL+AVRKRPGMYIGST + GLHHL+WEIVDN++DE ++ +I VV+
Sbjct: 3 NKYDGSAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNISVVL 62
Query: 70 NKDGSVSVADSGRGMPTGQHAMG-IPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+S+ D GRG+P + I TV+ + T+LHAGGKF + YKT+GGLHGVGSSVV
Sbjct: 63 HEDNSISILDDGRGIPVDINPQTKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALSAWL E+ RD +Y+ +F NGG LK +GT K+GT++ F+PD IF +
Sbjct: 123 NALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTT--KKTGTLIHFLPDPLIFKNLF 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F NTI ERL ES FL+K++K+S D + EF + G+ DF++++NE K+T + V
Sbjct: 181 FNPNTIKERLHESTFLIKDLKISFEDKINNKKY--EFINDQGLIDFIKFINETKKTFSDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
I+ + VEVA QY+D ++ ++SF N+V+T +GG HE K+A+T +N+YARK
Sbjct: 239 IFFKNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSVVNNYARKH 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
+LLKEKDKNLEG D REGLS+V+S+ +PE + +EGQTK+KL +P A V+ + + +
Sbjct: 299 DLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN A LV +AI ARDA+ AA++AR++++ KK K+++G+ GKLTPAQSK+
Sbjct: 359 FWLEENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGM-GGKLTPAQSKDPT 417
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NEL+LVEGDSAGGSAK GR++K+QAILPLRGKVLN KA++ D+LKNEEI ++ +G
Sbjct: 418 LNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGT 477
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+GA+F+L+ + Y KIIIMTDADTDG+HIQ LLLT FYR+MRPL+E G++YIALPPLYK+
Sbjct: 478 GIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 537
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ T+K YAW D EL+ L++E K +QRYKGLGEMNA+QL+ETTMDP R L+R
Sbjct: 538 T--NKNTKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQLFETTMDPSKRLLLR 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL 644
V I+D+ +AER+++ LMG+ + RRQWI++N+ F++
Sbjct: 595 VNINDILQAERQINTLMGNDVSIRRQWIDNNIDFSV 630
>ref|YP_016083.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
gb|AAT27872.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
Length = 638
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/638 (53%), Positives = 465/638 (72%), Gaps = 8/638 (1%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY+ +I+ + L+AV+KRPGMYIGSTDA GLHHL+WEIVDN++DEA++ F + I+V +
Sbjct: 4 NYDSKSIKSYKDLEAVKKRPGMYIGSTDAKGLHHLVWEIVDNSIDEAIANFANKIQVTLT 63
Query: 71 KDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
KDGSV V D+GRG+P + + TV+ +FT LH GGKFG G YKTSGGLHGVGSSVVNA
Sbjct: 64 KDGSVIVEDNGRGIPVDKFSDQKTTVEAVFTELHTGGKFGDGAYKTSGGLHGVGSSVVNA 123
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS L + RD +Y FENGG+ + K +G+ +K GT + F PD IF
Sbjct: 124 LSIKLIATVYRDKKIYETIFENGGEISQSTKIIGST--TKRGTKIEFWPDYIIFKRAKLS 181
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
+ ISERL+ES+FL++N+++ L D + E F YENG+ +FV+++N K+ + + I
Sbjct: 182 YEIISERLRESSFLIQNLEIVLVDENTNQK--ETFKYENGIVEFVDFINSGKDAINSKTI 239
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y+ +D VE+A+QY D +++ I+SFVNN++T+DGGSHE G+K+A+TK N+Y + N
Sbjct: 240 YINDTKKDINVEIAIQYTDSYNETIVSFVNNIKTRDGGSHENGVKTALTKVFNEYVKDKN 299
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK K+ + EG+D REG++ V+S+ +PE L+F GQTKDKLG+ A+ I E I+S L
Sbjct: 300 LLKGKNNSFEGNDIREGITIVISLRIPENILEFVGQTKDKLGTQEAKSITEDILSNSLWI 359
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L EN E A ++ K K++D+R AA+ AR +SR K + K++ +LSGKL+PA+SK A +
Sbjct: 360 WLNENKEDALKIINKIKKSQDSRIAAKNARKESRETKNSLKEQKILSGKLSPARSKKASE 419
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
EL+LVEGDSAGGSAK GR+ +FQAILPL+GKV+N EK K+ D+LKNEEI+T++ TIGAG
Sbjct: 420 KELFLVEGDSAGGSAKLGRNSQFQAILPLKGKVINCEKTKLIDVLKNEEISTIINTIGAG 479
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+GADF+L+ NY K++IMTDAD DG+HIQ LLLTF YRYM+PL+EAG VYIALPPL+K++
Sbjct: 480 IGADFDLKKANYHKVVIMTDADVDGSHIQVLLLTFLYRYMKPLIEAGMVYIALPPLFKIT 539
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
KT+K Y + EL +L ++ I QRYKGLGEMN +QLWET M+PETRTLI+V
Sbjct: 540 --NKKTKKFKYVLDEDELNNLMKKENDFEI-QRYKGLGEMNPDQLWETAMNPETRTLIKV 596
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
I+D ERRVS LMGD+ R++WI NV F+LE+N
Sbjct: 597 EIEDALITERRVSTLMGDQIELRKEWINKNVVFSLEDN 634
>ref|ZP_02964846.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
gb|EDU06006.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
str. ATCC 27817]
Length = 642
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/636 (53%), Positives = 468/636 (73%), Gaps = 9/636 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ +AI++LEGL+AVRKRPGMYIGST + GLHHL+WEIVDN++DE ++ +I V++
Sbjct: 3 NKYDGNAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNINVIL 62
Query: 70 NKDGSVSVADSGRGMPTGQHAMG-IPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+SV D GRG+P ++ I TV+ + TILHAGGKF + YKT+GGLHGVGSSVV
Sbjct: 63 HEDNSISVLDDGRGIPVDINSQTKISTVETVLTILHAGGKFDESAYKTAGGLHGVGSSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WL E+ RD +Y+ +F NGG +LK +GT K+GT++ F+PD IF +
Sbjct: 123 NALSSWLICEVYRDQKIYQAKFINGGHIHQSLKVIGTT--KKTGTLIHFLPDPLIFKNLV 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F N I ERL ES FL+K++K+ D EF G+ DF++++NE K+T + V
Sbjct: 181 FNPNIIKERLHESTFLIKDLKIIFEDKINKKKY--EFINNQGLIDFIKFINETKKTFSDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY + VE+A QY+D ++ ++SF N+V+T +GG HE K+A+T +N+YARK
Sbjct: 239 IYFKSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTNVVNNYARKH 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
NLLKEKDKNLEG D REGLS+V+S+ +PE + +EGQTK+KL +P A V+ + + +
Sbjct: 299 NLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN A LV +AI ARDA+ AA++AR++++ KK K+++G+ GKLTPAQSK+
Sbjct: 359 FWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGM-GGKLTPAQSKDPT 417
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NEL+LVEGDSAGGSAK GR++K+QAILPLRGKVLN KA++ D+LKNEEI ++ +G
Sbjct: 418 LNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGT 477
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+GA+F+L+ + Y KIIIMTDADTDG+HIQ LLLT FYR+MRPL+E G++YIALPPLYK+
Sbjct: 478 GIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 537
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ K K YAW D EL+ L++E K +QRYKGLGEMNA+QL+ETTMDP R L+R
Sbjct: 538 TNKNNK--KFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQLFETTMDPSKRLLLR 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL 644
V I+D+ +AER+++ LMG+ + RRQWI++N+ F++
Sbjct: 595 VNINDILQAERQINTLMGNDVSIRRQWIDNNIDFSV 630
>ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str.
ATCC 33697]
gb|EDT87892.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str.
ATCC 33697]
Length = 642
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/636 (53%), Positives = 469/636 (73%), Gaps = 9/636 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ +AI++LEGL+AVRKRPGMYIGST +TGLHHLIWEIVDN++DE ++ +I V++
Sbjct: 3 NKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVIL 62
Query: 70 NKDGSVSVADSGRGMPTGQHAMG-IPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+SV D GRG+P ++ I TV+ + T+LHAGGKF +G YKT+GGLHGVGSSVV
Sbjct: 63 HEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDEGAYKTAGGLHGVGSSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WL E+ RD +Y+ +F NGG +LK +GT K+GT++ F+PD IF +
Sbjct: 123 NALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTT--KKTGTLIHFLPDPLIFKNLV 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F N I ERL ES FL+K++K+ D EF G+ DF++++NE K+T + V
Sbjct: 181 FNPNIIKERLHESTFLIKDLKIIFEDKINKKKY--EFINNQGLIDFIKFINEAKKTFSDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY VE+A QY+D ++ ++SF N+V+T +GG HE K+A+T +N+YARK
Sbjct: 239 IYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSVVNNYARKH 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
NLLKEKDKNLEG D REGLS+V+S+ +PE + +EGQTK+KL +P A V+ + + +
Sbjct: 299 NLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN A LV +AI ARDA+ AA++AR++++ KK K+++G+ GKLTPAQSK+
Sbjct: 359 FWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGM-GGKLTPAQSKDPV 417
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NEL+LVEGDSAGGSAK GR++K+QAILPLRGKVLN KA++ D+LKNEEI ++ +G
Sbjct: 418 LNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGT 477
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+GA+F+L+ + Y KIIIMTDADTDG+HIQ LLLT FYR+MRPL+E G++YIALPPLYK+
Sbjct: 478 GIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 537
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ K K YAW D EL+ L++E K +QRYKGLGEMNA+QL+ETTMDP R L++
Sbjct: 538 TNKNNK--KFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQLFETTMDPNNRLLLK 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL 644
+ I+D+ +AER+++ LMG+ + R+QWI++N+ F++
Sbjct: 595 ININDILQAERQINTLMGNDVSIRKQWIDNNIDFSV 630
>ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
ATCC 27813]
gb|EDT49128.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
ATCC 27813]
Length = 642
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/636 (52%), Positives = 469/636 (73%), Gaps = 9/636 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ +AI++LEGL+AVRKRPGMYIGST +TGLHHLIWEIVDN++DE ++ +I V++
Sbjct: 3 NKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVIL 62
Query: 70 NKDGSVSVADSGRGMPTGQHAMG-IPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+SV D GRG+P ++ I TV+ + T+LHAGGKF + YKT+GGLHGVGSSVV
Sbjct: 63 HEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WL E+ RD +Y+ +F NGG +LK +GT K+GT++ F+PD IF +
Sbjct: 123 NALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTT--KKTGTLIHFLPDPLIFKNLV 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F N I ERL ES FL+K++K+ D EF G+ DF++++NE K+T + V
Sbjct: 181 FNPNIIKERLHESTFLIKDLKIIFEDKINKKKY--EFINNQGLIDFIKFINEAKKTFSDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY +VE+A QY+D ++ ++SF N+V+T +GG HE K+A+T +N+YARK
Sbjct: 239 IYFRSNINKIEVEIAFQYSDQNNEIMVSFANSVKTNEGGVHENAFKNALTSVVNNYARKH 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
NLLKEKDKNLEG D REGLS+V+S+ +PE + +EGQTK+KL +P A V+ + + +
Sbjct: 299 NLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN A LV +AI ARDA+ AA++AR++++ KK K+++G+ GKLTPAQSK+
Sbjct: 359 FWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGM-GGKLTPAQSKDPT 417
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NEL+LVEGDSAGGSAK GR++K+QAILPLRGKVLN KA++ D+LKNEEI ++ +G
Sbjct: 418 LNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGT 477
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+GA+F+L+ + Y KIIIMTDADTDG+HIQ LLLT FYR+MRPL+E G++YIALPPLYK+
Sbjct: 478 GIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 537
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ K K YAW D EL+ L++E K +QRYKGLGEMNA+QL+ETTMDP R L++
Sbjct: 538 TNKNNK--KFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQLFETTMDPNNRLLLK 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL 644
+ I+D+ +AER+++ LMG+ + R+QWI++N+ F++
Sbjct: 595 ININDILQAERQINTLMGNDVSIRKQWIDNNIDFSV 630
>ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
ATCC 700970]
ref|YP_001752551.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str.
ATCC 27815]
pir||G82886 topoisomerase IV subunit B UU466 [imported] - Ureaplasma
urealyticum
gb|AAF30878.1|AE002143_3 topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC
700970]
gb|ACA32705.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str.
ATCC 27815]
Length = 642
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/636 (52%), Positives = 468/636 (73%), Gaps = 9/636 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ +AI++LEGL+AVRKRPGMYIGST +TGLHHLIWEIVDN++DE ++ +I V++
Sbjct: 3 NKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVIL 62
Query: 70 NKDGSVSVADSGRGMPTGQHAMG-IPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+SV D GRG+P ++ I TV+ + T+LHAGGKF + YKT+GGLHGVGSSVV
Sbjct: 63 HEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WL E+ RD +Y+ +F NGG +LK +GT K+GT++ F+PD IF +
Sbjct: 123 NALSSWLICEVYRDQKIYQAKFINGGHINQSLKVIGTT--KKTGTLIHFLPDPLIFKNLV 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F N I ERL ES FL+K++K+ D EF G+ DF++++NE K+T + V
Sbjct: 181 FNPNIIKERLHESTFLIKDLKIIFEDKINKKKY--EFINNQGLIDFIKFINEAKKTFSDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY VE+A QY+D ++ ++SF N+V+T +GG HE K+A+T +N+YARK
Sbjct: 239 IYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSVVNNYARKH 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
NLLKEKDKNLEG D REGLS+V+S+ +PE + +EGQTK+KL +P A V+ + + +
Sbjct: 299 NLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN A LV +AI ARDA+ AA++AR++++ KK K+++G+ GKLTPAQSK+
Sbjct: 359 FWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGM-GGKLTPAQSKDPV 417
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NEL+LVEGDSAGGSAK GR++K+QAILPLRGKVLN KA++ D+LKNEEI ++ +G
Sbjct: 418 LNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGT 477
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+GA+F+L+ + Y KIIIMTDADTDG+HIQ LLLT FYR+MRPL+E G++YIALPPLYK+
Sbjct: 478 GIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 537
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ K K YAW D EL+ L++E K +QRYKGLGEMNA+QL+ETTMDP R L++
Sbjct: 538 TNKNNK--KFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQLFETTMDPNNRLLLK 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL 644
+ I+D+ +AER+++ LMG+ + R+QWI++N+ F++
Sbjct: 595 ININDILQAERQINTLMGNDVSIRKQWIDNNIDFSV 630
>ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
ATCC 27818]
gb|EDU19362.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
ATCC 27818]
Length = 642
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/636 (52%), Positives = 468/636 (73%), Gaps = 9/636 (1%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ +AI++LEGL+AVRKRPGMYIGST +TGLHHLIWEIVDN++DE ++ +I V++
Sbjct: 3 NKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVIL 62
Query: 70 NKDGSVSVADSGRGMPTGQHAMG-IPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+SV D GRG+P ++ I TV+ + T+LHAGGKF + YKT+GGLHGVGSSVV
Sbjct: 63 HEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS+WL E+ RD +Y+ +F NGG +LK +GT K+GT++ F+PD IF +
Sbjct: 123 NALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTT--KKTGTLIHFLPDPLIFKNLV 180
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F N I ERL ES FL+K++K+ D EF G+ DF++++NE K+T + V
Sbjct: 181 FNPNIIKERLHESTFLIKDLKIIFEDKINKKKY--EFINNQGLIDFIKFINEAKKTFSDV 238
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY VE+A QY+D ++ ++SF N+V+T +GG HE K+A+T +N+YARK
Sbjct: 239 IYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSVVNNYARKH 298
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
NLLKEKDKNLEG D REGLS+V+S+ +PE + +EGQTK+KL +P A V+ + + +
Sbjct: 299 NLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
F+L EN A LV +AI ARDA+ AA++AR++++ KK K+++G+ GKLTPAQSK+
Sbjct: 359 FWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGM-GGKLTPAQSKDPV 417
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NEL+LVEGDSAGGSAK GR++K+QAILPLRGKVLN KA++ D+LKNEEI ++ +G
Sbjct: 418 LNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGT 477
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+GA+F+L+ + Y KIIIMTDADTDG+HIQ LLLT FYR+MRPL+E G++YIALPPLYK+
Sbjct: 478 GIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKL 537
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ K K YAW D EL+ L++E K +QRYKGLGEMNA+QL+ETTMDP R L++
Sbjct: 538 TNKNNK--KFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQLFETTMDPNNRLLLK 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTL 644
+ I+D+ +AER+++ LMG+ + R+QWI++N+ F++
Sbjct: 595 ININDILQAERQINTLMGNDVSIRKQWIDNNIDFSV 630
>ref|NP_975496.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
emb|CAE77138.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
Length = 643
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/641 (53%), Positives = 463/641 (72%), Gaps = 14/641 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y++ AIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNA+DEAL+G+ I V++ K
Sbjct: 7 YDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVILEK 66
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S++++D+GRG+PTG H G T +VIF+ILHAGGKF YK+SGGLHGVGSSV NAL
Sbjct: 67 DNSITISDNGRGIPTGMHKTGKSTPEVIFSILHAGGKFDSTAYKSSGGLHGVGSSVTNAL 126
Query: 132 SAWLEVEITRDGSVYRQRFENGGK---PVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
S + I RD ++ F+NGGK P+T + A K+GT + F+PDD IFS
Sbjct: 127 SKRFKATIYRDKKIHEIEFKNGGKLEKPLTFI-----ANTYKTGTTINFLPDDSIFSNTK 181
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F F+ ISERLKESA L +K++L+DL + + E+ ++ G+ +F++ L +DK+ +T +
Sbjct: 182 FNFSLISERLKESALLNSGLKITLSDLISNRYV--EYQFQYGLVEFIKELVDDKKVITDI 239
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
I + + ++ E+ALQY + ++ IL F NNV+T DGG+H G KS + +A+NDYA++
Sbjct: 240 ITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRAINDYAKEQ 299
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
+LK+K K L+ +D REGL A++++ +PE +++EGQTK KLG+ A+ +VE IV E ++
Sbjct: 300 KILKDKAK-LDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYEFMS 358
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
++L+EN +A+ ++ A A+ AR AA++AR ++ K K L+ GKLTPAQ K +
Sbjct: 359 YWLIENKVLANKIIENAFNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLTPAQGKKRE 418
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
NELYLVEGDSAGGSAK GR+RKFQAILPLRGKV+N+EKAK+ D+LKNEEI +++ IGA
Sbjct: 419 INELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGA 478
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
GVG DF++ DINY KIIIMTDADTDGAHIQTLLLTFFYR+M+ L+ VYIALPPLYK+
Sbjct: 479 GVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVYIALPPLYKI 538
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
+ + Y W + EL + + K +QRYKGLGEMNA+QLW+TTMDP+ R +I+
Sbjct: 539 T---FNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMDPKNRKIIQ 595
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTV 649
VTI D AER LMGD R+ WI++NVKFTLE++ +
Sbjct: 596 VTITDGLLAERMFKTLMGDDVEKRKLWIQENVKFTLEDDQI 636
>ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
sp|P50028|GYRB_MYCCT DNA gyrase subunit B
gb|ABC01260.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 643
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/638 (53%), Positives = 460/638 (72%), Gaps = 8/638 (1%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y++ AIQVLEGL+AVRKRPGMYIGSTD GLHHL+WEIVDNA+DEAL+G+ I V++ K
Sbjct: 7 YDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVILEK 66
Query: 72 DGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNAL 131
D S++V D+GRG+PTG H G PT +VIF++LHAGGKF YK+SGGLHGVGSSV NAL
Sbjct: 67 DNSITVIDNGRGIPTGMHKTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSVTNAL 126
Query: 132 SAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKF 191
S + I RD ++ F+NGGK L + T K+GT + F+PDD IFS F F
Sbjct: 127 SKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTT--YKTGTTINFLPDDTIFSNAKFNF 184
Query: 192 NTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYM 251
+ ISERLKESA L +K++L+DL + + E+ +++G+ +FV+ L +DK +T +I +
Sbjct: 185 SLISERLKESALLNSGLKITLSDLISNRYV--EYQFQDGLVEFVKELVDDKTPVTDIITI 242
Query: 252 EGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLL 311
+ ++ VE+ALQY + ++ IL F NNV+T DGG+H G KS + +A+NDYA+ +L
Sbjct: 243 NNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHLVGFKSGLIRAINDYAKDQKIL 302
Query: 312 KEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFL 371
K+K K L+ +D REGL A++++ +PE +++EGQTK KLG+ A+ +VE IV E ++++L
Sbjct: 303 KDKTK-LDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYEFMSYWL 361
Query: 372 LENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNE 431
+EN +A+ ++ A+ A+ AR AA++AR ++ K K L+ GKLTPAQ K + NE
Sbjct: 362 IENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGKKRELNE 421
Query: 432 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVG 491
LYLVEGDSAGGSAK GRDR FQAILPLRGKV+N+EKAK+ D+LKNEEI +++ IGAGVG
Sbjct: 422 LYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAGVG 481
Query: 492 ADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKG 551
DF++ DINY KIIIMTDADTDGAHIQTLLLTFFYR+M+ L+ VYIALPPLYK++
Sbjct: 482 KDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPLYKIT-- 539
Query: 552 KGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTI 611
+ Y W + EL + K +QRYKGLGEMNA+QLW+TTMDP+ R +I+VTI
Sbjct: 540 -FNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGLGEMNADQLWQTTMDPKNRKIIQVTI 598
Query: 612 DDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTV 649
D AER LMGD R+ WI++NVKFTLE++ +
Sbjct: 599 SDGLLAERMFKTLMGDDVEKRKLWIQENVKFTLEDDQI 636
>ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
sp|P94604|GYRB_CLOAB DNA gyrase subunit B
gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium acetobutylicum
ATCC 824]
Length = 637
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/645 (54%), Positives = 466/645 (72%), Gaps = 23/645 (3%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M K EI Y++ IQVLEGL+AVRKRPGMYIGST GLHHL++EIVDN++DEAL+G
Sbjct: 1 MSEKNEI----YDESQIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEIVDNSIDEALAG 56
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGG 119
+ IKV I+KD SV+V+D GRGMP G H M PTV+VI TILHAGGKFG G Y+ SGG
Sbjct: 57 YCSHIKVFIHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGAYRVSGG 116
Query: 120 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 179
LHGVG+SVVNALS EVE+ +G +++Q + G K + +K+G + + GT + F P
Sbjct: 117 LHGVGASVVNALSETCEVEVKTEGHIWKQTYHRG-KVASPFEKIGDS--DEHGTKIYFKP 173
Query: 180 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
D +IF ++ ++T+S+RL+E AFL K +K+ LTD R D E FHYE G++ FV YLN
Sbjct: 174 DPEIFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKN--EIFHYEGGLKSFVSYLN 231
Query: 240 EDKETL-TPVIYMEGQ-DQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
+KE + IY+EG D ++ VE+ALQYNDG+++NI SF NN+ T +GG+H G K+A+
Sbjct: 232 RNKEVVFKEPIYVEGSIDSNYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKTAL 291
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDYA+K LKE DKNL G D REGL+AV+S+ + E QFEGQTK KLG+ R
Sbjct: 292 TRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEP--QFEGQTKTKLGNTEVRG 349
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
IV+SI+SE+++ +L EN ++ ++ KA+ A AREAA+KAR+ +R +K+ + L G
Sbjct: 350 IVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITR--RKSVLESTSLPG 407
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+A++ E+Y+VEGDSAGGSAKQGR+R+FQAILPLRGK++N EK ++ IL +E
Sbjct: 408 KLADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSE 467
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
EI M G G+G DF++ + Y KIIIMTDAD DGAHI+TL+LTFFYRYM L+ GH
Sbjct: 468 EIKAMATAFGGGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGH 527
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQL 594
V+IA PPLYK++ KT K YA++D ELED+ ++ G K +QRYKGLGEMN QL
Sbjct: 528 VFIAQPPLYKVT----KTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQL 583
Query: 595 WETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 639
WETTM+PE RTLI+V I+D A+ ++LMGDK PRR++IE+N
Sbjct: 584 WETTMNPEQRTLIKVNIEDAMAADEIFTILMGDKVDPRRKFIEEN 628
>gb|AAB41130.1| DNA gyrase subunit B
Length = 637
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/645 (54%), Positives = 466/645 (72%), Gaps = 23/645 (3%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M K EI Y++ IQVLEGL+AVRKRPGMYIG+T GLHHL++EIVDN++DEAL+G
Sbjct: 1 MSEKNEI----YDESQIQVLEGLEAVRKRPGMYIGTTGTRGLHHLVYEIVDNSIDEALAG 56
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGG 119
+ IKV I+KD SV+V+D GRGMP G H M PTV+VI TILHAGGKFG G Y+ SGG
Sbjct: 57 YCSHIKVFIHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGAYRVSGG 116
Query: 120 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 179
LHGVG+SVVNALS EVE+ +G +++Q + G K + +K+G + + GT + F P
Sbjct: 117 LHGVGASVVNALSETCEVEVKTEGHIWKQTYHRG-KVASPFEKIGDS--DEHGTKIYFKP 173
Query: 180 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
D +IF ++ ++T+S+RL+E AFL K +K+ LTD R D E FHYE G++ FV YLN
Sbjct: 174 DPEIFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKN--EIFHYEGGLKSFVSYLN 231
Query: 240 EDKETL-TPVIYMEGQ-DQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
+KE + IY+EG D ++ VE+ALQYNDG+++NI SF NN+ T +GG+H G K+A+
Sbjct: 232 RNKEVVFKEPIYVEGSIDSNYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKTAL 291
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDYA+K LKE DKNL G D REGL+AV+S+ + E QFEGQTK KLG+ R
Sbjct: 292 TRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEP--QFEGQTKTKLGNTEVRG 349
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
IV+SI+SE+++ +L EN ++ ++ KA+ A AREAA+KAR+ +R +K+ + L G
Sbjct: 350 IVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITR--RKSVLESTSLPG 407
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+A++ E+Y+VEGDSAGGSAKQGR+R+FQAILPLRGK++N EK ++ IL +E
Sbjct: 408 KLADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSE 467
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
EI M G G+G DF++ + Y KIIIMTDAD DGAHI+TL+LTFFYRYM L+ GH
Sbjct: 468 EIKAMATAFGGGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGH 527
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQL 594
V+IA PPLYK++ KT K YA++D ELED+ ++ G K +QRYKGLGEMN QL
Sbjct: 528 VFIAQPPLYKVT----KTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQL 583
Query: 595 WETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 639
WETTM+PE RTLI+V I+D A+ ++LMGDK PRR++IE+N
Sbjct: 584 WETTMNPEQRTLIKVNIEDAMAADEIFTILMGDKVDPRRKFIEEN 628
>gb|AAC33841.2| topoisomerase IV subunit [Mycoplasma hominis]
Length = 639
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/643 (53%), Positives = 465/643 (72%), Gaps = 12/643 (1%)
Query: 7 ITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIK 66
+++NNY ++VL+GLDAVRKRPGMYIGSTD++GLHHLIWEI DNA+DEALSGF + I
Sbjct: 1 MSLNNYEASDLKVLKGLDAVRKRPGMYIGSTDSSGLHHLIWEIFDNAIDEALSGFANKII 60
Query: 67 VVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSS 126
V + KD SV V D+GRG+P +H G V+++FT LHAGGKFG G YKTSGGLHGVGSS
Sbjct: 61 VTLKKDSSVIVEDNGRGIPVNKHESGKSGVELVFTELHAGGKFGDGAYKTSGGLHGVGSS 120
Query: 127 VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVG-TAPKSKSGTVVTFMPDDKIFS 185
VVNALS+ +EV + RD Y F+ T ++K +P +K GT V F D IF
Sbjct: 121 VVNALSSKVEVTVWRDKKAYFTAFQQD----TIIEKTHEISPTTKQGTKVQFWADFSIFK 176
Query: 186 TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL 245
+ I E+L+E++FL+ N+ + + D+ + F ++G+++++ ++ E K+ +
Sbjct: 177 KSKYSPEIIKEKLREASFLMPNLTIEFYNENTDEHVT--FKTKDGIKEYINFVGEGKKFI 234
Query: 246 TPVIYMEGQ-DQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDY 304
+ + Y G + ++++AL Y DG+S++I SFVNNV+T+DGG+HET LK+A+TK +NDY
Sbjct: 235 SEIFYASGMCNYGIEIDLALVYTDGYSESIYSFVNNVKTRDGGTHETALKTALTKTINDY 294
Query: 305 ARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVS 364
A K L K+ EGSD REG+ AV+S+ VPE+ L+F GQTKDKLG+P AR +VE VS
Sbjct: 295 ASKNGLAKKI--TFEGSDVREGIIAVISLKVPEEILEFVGQTKDKLGTPEAREVVEDFVS 352
Query: 365 EKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQS 424
+K FFL EN A ++ K KA +A+ AAR A++++R K +++ +LSGKLTPAQS
Sbjct: 353 QKFYFFLNENKIEAEKIISKIKKAYEAKVAARNAKNEARKIKNKFENRKILSGKLTPAQS 412
Query: 425 KNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVY 484
KN EL+LVEGDSAGGSAK GR+R QAILPLRGKV+NT+KAK++D+L NEEI T++
Sbjct: 413 KNPAVKELFLVEGDSAGGSAKLGRNRVTQAILPLRGKVINTDKAKLSDVLANEEIATIIN 472
Query: 485 TIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPP 544
TIGAG+G DFNL++ Y KIIIMTDADTDGAHIQTLLLTFF+RYM+ LVE G VYIALPP
Sbjct: 473 TIGAGIGEDFNLKNAQYHKIIIMTDADTDGAHIQTLLLTFFWRYMKKLVENGMVYIALPP 532
Query: 545 LYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETR 604
LYK+S K K + YAW + +L+++ ++ I QRYKGLGEMNA+QLWETTM+PETR
Sbjct: 533 LYKISI-KSKNTQPLYAWDEDQLKEITSKYTNYEI-QRYKGLGEMNADQLWETTMNPETR 590
Query: 605 TLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEEN 647
++I+V ++D ER VS LM D R+QWI +NV F+ E++
Sbjct: 591 SIIKVDVEDEILVERNVSTLMSDDVIARKQWINNNVDFSSEDD 633
>ref|ZP_01828867.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS69]
gb|EDK64970.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS69]
Length = 415
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/408 (81%), Positives = 361/408 (88%), Gaps = 12/408 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
++KKEI INNYNDDAIQVLEGLDAVRKRPGMYIGSTD GLHHL+WEIVDNAVDEALSGF
Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLH 121
GD I V INKDGS++V D GRGMPTG HAMGIPTV+VIFTILHAGGKFGQGGYKTSGGLH
Sbjct: 61 GDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLH 120
Query: 122 GVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDD 181
GVGSSVVNALS+WLEVEITRDG+VY+QRFENGGKPVTTLKKVGTAPKSK+GT VTFMPD
Sbjct: 121 GVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDA 180
Query: 182 KIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNED 241
IFST DFK+NTISERL ESAFLLKNV +SLTD R D+ I EFHYENGVQDFV YLNED
Sbjct: 181 TIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAI--EFHYENGVQDFVSYLNED 238
Query: 242 KETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
KE LTPV+Y EG+D FQVEVALQYNDGFSDNILSFVNNVRTKDGG+HETGLKSAITK M
Sbjct: 239 KEILTPVLYFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVM 298
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARKT LLKEKDKNLEGSDYREGL+AVLSILVPE+HLQFEGQTKDKLGSPLARP+V+
Sbjct: 299 NDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDG 358
Query: 362 IVSEKLTFFLLENGEVASH----------LVRKAIKARDAREAARKAR 399
IV++KLTFFL+ENGE+AS+ LV++ ++ E RK R
Sbjct: 359 IVADKLTFFLMENGELASNSSARLSRPVMLVKQHVRRVMRAEMGRKTR 406
>ref|YP_752735.1| DNA topoisomerase (ATP-hydrolyzing) [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 633
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/634 (52%), Positives = 455/634 (71%), Gaps = 13/634 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
YN IQVLEGL+AVRKRPGMYIGST GLHHL++EIVDN++DEA++GF I+V IN+
Sbjct: 6 YNASDIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVFEIVDNSIDEAVAGFCKKIEVTINQ 65
Query: 72 DGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRG+P H AMGIP +QVI T LH+GGKFG GY SGGLHGVG SVVNA
Sbjct: 66 DNSITVCDDGRGIPVDIHPAMGIPALQVILTTLHSGGKFGGSGYNISGGLHGVGLSVVNA 125
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS +EV + RDG +Y+Q +E G PV ++ +G + ++GT + F DD+IF I+F+
Sbjct: 126 LSRRMEVRVKRDGHIYQQDYERGN-PVNEIRIIGES--KETGTSICFFADDEIFEEINFE 182
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP-VI 249
+ +RL+E +FL +N+K+SL D R ++ +EFHY +G++DFV Y+N++KE + I
Sbjct: 183 REILLQRLRELSFLNRNLKISLRDEREEEVFYQEFHYSHGLKDFVAYINKNKEVINDNPI 242
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y E + D V+VA+QYN+ +S+N+ SF NN+RT++GG+HE G K+A+T+ +NDYA+K N
Sbjct: 243 YFENKKDDVIVQVAIQYNNSYSENLYSFANNIRTQEGGTHEIGFKNALTRVINDYAKKNN 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
+LKE D NL G D REG++A++S+LV + QFEGQTK KLG+ R IVESIV E +
Sbjct: 303 ILKENDNNLSGEDIREGIAAIISVLVKDP--QFEGQTKTKLGNTYIRGIVESIVFEHVED 360
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L EN A L+ KAI AR AREAA+KAR+ +R +KN + L GKL +KN +
Sbjct: 361 YLNENPAAARKLLDKAISARRAREAAKKARELTR--RKNALESTALPGKLADCSNKNPAE 418
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
+EL++VEGDSAGGSAKQGRDR +QAILPLRGK+LN EKA++ +L +EEI ++ +G G
Sbjct: 419 SELFIVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNLITAMGTG 478
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF+++ Y K+ IMTDAD DG+HI+ LLLTFFYRYM+ L+E G++YIA PPLY +
Sbjct: 479 IGEDFDIKKARYHKLFIMTDADVDGSHIRVLLLTFFYRYMKELIEEGYLYIAQPPLYGLK 538
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
+GK +I Y + D +L + + +QRYKGLGEM+ QLW TTMD E+RT+++V
Sbjct: 539 RGK----EIKYFYNDADLNAFLSQTEQKWSIQRYKGLGEMDPEQLWTTTMDAESRTVLKV 594
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
TI+D +A S LMGD PRR++IE N ++
Sbjct: 595 TIEDAIKANDIFSALMGDNVQPRREFIESNARYV 628
>ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125]
sp|O50627|GYRB_BACHD DNA gyrase subunit B
dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.]
dbj|BAA82690.1| 78%-identity [Bacillus halodurans]
dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125]
Length = 637
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/637 (55%), Positives = 472/637 (74%), Gaps = 19/637 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y++ IQVLEGL+AVRKRPGMYIGST + GLHHL+WEIVDN++DEA++GF D+I VVI +
Sbjct: 8 YDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVIEE 67
Query: 72 DGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D+GRG+P G H MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVVNA
Sbjct: 68 DNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNA 127
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TIDF 189
LS LEVE+ R+G V+ Q+F G P L+ +GT ++GT + F PD IF+ T F
Sbjct: 128 LSTMLEVEVHREGKVHYQKFHRG-VPAADLEVIGTT--DRTGTKIHFKPDGDIFTETTVF 184
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL--TP 247
+++T++ RL+E AFL K +++ +TD+R ++ +EFHYE G+ FVE+LN +ETL TP
Sbjct: 185 EYDTLASRLRELAFLNKGLRIKITDMREEEKS-DEFHYEGGIASFVEHLNRTRETLHETP 243
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
I++EG+ Q VE+A+QYNDGF+ NI SF NN+ T +GG+HE+G K+ +T+ +NDYARK
Sbjct: 244 -IHIEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARK 302
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
NL KE D NL G D REGL+A++S+ +P+ QFEGQTK KLG+ AR I +S+ +E
Sbjct: 303 HNLFKESDPNLTGEDVREGLTAIISVKIPDP--QFEGQTKTKLGNSEARTITDSLFTEHF 360
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+ FL+E+ +VA LV K + A AREAA+KAR+ +R +K+ + L GKL S++A
Sbjct: 361 SRFLIEHPQVARKLVDKGLMASRAREAAKKARELTR--RKSALEVSSLPGKLADCSSRDA 418
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+E+Y+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N EI ++ +G
Sbjct: 419 SISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALG 478
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+G DF++E Y KIIIMTDAD DGAHI+TL+LTFFYRYMRPL+E G+VYIA PPLYK
Sbjct: 479 TGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYK 538
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPETRT 605
+ +GK I YA+ D EL+++ + A +QRYKGLGEMN +QLWETTMDP RT
Sbjct: 539 VQQGK----DIQYAYGDAELQEILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRT 594
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+++VT++D +A+ +LMGD+ PRR +I++N ++
Sbjct: 595 VLQVTLEDAMKADEIFEILMGDRVEPRRDFIQENARY 631
>gb|ABW84389.1| DNA topoisomerase IV subunit B [Spiroplasma sp. CRAYFISH]
Length = 559
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/564 (57%), Positives = 432/564 (76%), Gaps = 6/564 (1%)
Query: 28 KRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTG 87
KRPGMYIGSTD GLHHL+WEIVDN++DEAL+GF +I ++I+K+ ++V D+GRG+P G
Sbjct: 1 KRPGMYIGSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIG 60
Query: 88 QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYR 147
+HA G T +VIF++LHAGGKFG GYKTSGGLHGVGSSVVNALS+ +V I RD +
Sbjct: 61 KHASGKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKISN 120
Query: 148 QRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKN 207
+F NGGK L +G+ + +GT V F+PD +IF IDF F+TISER++ESAFL
Sbjct: 121 IKFNNGGKLAQKLTTIGST--ATTGTTVYFVPDPEIFKVIDFSFSTISERIRESAFLNSG 178
Query: 208 VKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYN 267
+K++L D R D + E+ + NG+++F+ Y+NE K+ +TP+I +G ++D VE+ALQY+
Sbjct: 179 LKITLQDERTDKYV--EYLFNNGLEEFITYMNEGKKPITPIITFKGIEKDIDVEIALQYS 236
Query: 268 DGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGL 327
F++N+LSF NNV+T DGGSH G ++ +TK +N+YARK LLKEKDKNL+ +D REGL
Sbjct: 237 TEFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTREGL 296
Query: 328 SAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIK 387
+A++S+ +PE +Q+EGQTK KLG+ A+ VE+IV++++ F++LEN A ++ KA+
Sbjct: 297 TAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNAYAIIEKALL 356
Query: 388 ARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQG 447
AR A+E ARKAR+ +R K+ + LL+GKLTPAQ+KN K NEL+LVEGDSAGGSAK G
Sbjct: 357 ARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAKSG 416
Query: 448 RDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIM 507
RDRKFQAIL LRGKV+N EKAK+ D++ NEEIN M++ IGAG G +F+LED NY KIIIM
Sbjct: 417 RDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNNFDLEDANYGKIIIM 476
Query: 508 TDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGEL 567
TDADTDGAHIQTLLLTFFYR+MRPL+E VYIALPPL+K++ KT+K++YAW + EL
Sbjct: 477 TDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKIT--NLKTKKVSYAWDENEL 534
Query: 568 EDLRREFGKGAILQRYKGLGEMNA 591
+ + LQRYKGLGEMNA
Sbjct: 535 KTKLKHLKDKFELQRYKGLGEMNA 558
>ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM
8903]
gb|ABP65670.1| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 637
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/634 (53%), Positives = 455/634 (71%), Gaps = 14/634 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y IQVLEGL+AVRKRPGMYIGST GLHHL++EIVDNA+DEA++GF +I V+I++
Sbjct: 11 YTASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIDVIIHR 70
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D SV+V D GRG+P H + V+V+FT+LHAGGKF + YK SGGLHGVG+SVVNA
Sbjct: 71 DNSVTVLDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNESVYKVSGGLHGVGASVVNA 130
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS +LEVE+ RDG VY Q++E G KPV LK +G ++GT VTF+PDD+IF TI+F
Sbjct: 131 LSRYLEVEVYRDGKVYYQKYERG-KPVCDLKVIGQT--QRTGTKVTFLPDDEIFETIEFD 187
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP-VI 249
+ + +RL+E AFL K ++++ TD R +P E Y+ G+ +FV++LN +KE L P I
Sbjct: 188 ADVLLQRLRELAFLNKGIRITFTDEREKNPKTIELKYDGGIAEFVKFLNRNKEVLHPEPI 247
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y+EG+ VEVA+QY D F +NI SF NN+ T DGG+H G K+A+TKA+N+YA+K N
Sbjct: 248 YIEGEKNQILVEVAIQYTDQFGENIYSFANNIATIDGGTHLVGFKAAVTKAVNEYAKKYN 307
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
+K D L G D R+G++AV+S+ + E QFEGQTK KLG+ AR VE++VSEKL
Sbjct: 308 FVK-GDNQLLGEDIRDGMTAVVSVKIHEP--QFEGQTKTKLGNSEARWAVENLVSEKLAA 364
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN +V+ ++ KA+ A ARE ARKAR+ +K+ D L GKL K+ +K
Sbjct: 365 FLEENPDVSKKIIDKALLAAKAREEARKARELVIK-RKSALDSSNLPGKLADCSEKDPEK 423
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+++VEGDSAGGSAKQGRDR++QAILPL GK+LN EKA I N+++ ++ +G G
Sbjct: 424 CEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASPDKIYSNDKLLPLIQALGCG 483
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G D +L+ + Y K+I+M DAD DG+HI+TLLLTFFYRYMRPL+E GH+YIA PPLYK++
Sbjct: 484 IGNDLDLKKLRYHKVIVMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKIT 543
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
KGK ++ YA+ D EL+ + +E K A +QR+KGLGEMNA +LWETTMDP R L+RV
Sbjct: 544 KGK----QVRYAYNDKELQKILQEM-KDAQVQRFKGLGEMNAEELWETTMDPARRILLRV 598
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
++D AE ++LMG+K PRR++IE N K+
Sbjct: 599 ELEDAVMAEEIFTILMGEKVEPRREFIEKNAKYV 632
>ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
sp|P05652|GYRB_BACSU DNA gyrase subunit B
emb|CAA26221.1| unnamed protein product [Bacillus subtilis]
dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis]
emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168]
Length = 638
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/638 (53%), Positives = 457/638 (71%), Gaps = 16/638 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y+++ IQVLEGL+AVRKRPGMYIGST++ GLHHL+WEIVDN++DEAL+G+ DI + I
Sbjct: 6 NSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQI 65
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
KD S++V D+GRG+P G H MG P V+VI T+LHAGGKF GYK SGGLHGVG+SVV
Sbjct: 66 EKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS L+V + RDG ++RQ ++ G PVT L+ +G +GT F+PD +IFS T
Sbjct: 126 NALSTELDVTVHRDGKIHRQTYKRG-VPVTDLEIIGET--DHTGTTTHFVPDPEIFSETT 182
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-T 246
++ ++ ++ R++E AFL K V +++ D R E+HYE G++ +VEYLN KE +
Sbjct: 183 EYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHE 242
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
IY+EG+ VEVALQYND ++ NI SF NN+ T +GG+HE G K+ +T+ +NDYAR
Sbjct: 243 EPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYAR 302
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K L+KE D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I +++ S
Sbjct: 303 KKGLIKENDPNLSGDDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARTITDTLFSTA 360
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
+ F+LEN + A +V K + A AR AA+KAR+ +R +K+ + L GKL SK+
Sbjct: 361 METFMLENPDAAKKIVDKGLMAARARMAAKKARELTR--RKSALEISNLPGKLADCSSKD 418
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
+ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N E+ +M+ +
Sbjct: 419 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 478
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+G DFNLE Y K++IMTDAD DGAHI+TLLLTFFYRYMR ++E G+VYIA PPLY
Sbjct: 479 GTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLY 538
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPETR 604
K+ +GK ++ YA+ D ELE+L + + LQRYKGLGEMNA QLWETTMDP +R
Sbjct: 539 KVQQGK----RVEYAYNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSR 594
Query: 605 TLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TL++VT++D A+ +LMGDK PRR +IE N ++
Sbjct: 595 TLLQVTLEDAMDADETFEMLMGDKVEPRRNFIEANARY 632
>ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
gb|AAU38997.1| GyrB [Bacillus licheniformis DSM 13]
Length = 637
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/639 (54%), Positives = 454/639 (71%), Gaps = 18/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ +I V I
Sbjct: 5 NNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVAI 64
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
KD S++V D+GRG+P G H MG P V+VI T+LHAGGKF GYK SGGLHGVG+SVV
Sbjct: 65 EKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVV 124
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS L+V + RDG ++ Q FE G P LK +G +GT F PD +IF+ T
Sbjct: 125 NALSTELDVTVYRDGKIHYQEFERG-VPKADLKVIGDT--EVTGTTTHFKPDPEIFTETT 181
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
++ ++T++ R++E AFL K VK+++ D R E+ YE G++ +VE+LN +E +
Sbjct: 182 EYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHE 241
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG VEVALQYND ++ NI SF NN+ T +GG+HE G K+ +T+ +NDYA
Sbjct: 242 EPV-YIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYA 300
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
R+ + KE D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I +++ SE
Sbjct: 301 RRNGVFKESDPNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARTITDALFSE 358
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
L FLLEN + A +V K + A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 359 ALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTR--RKSALEVSNLPGKLADCSSK 416
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N E+ +M+
Sbjct: 417 DPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 476
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
+G G+G DFNLE Y K++IMTDAD DGAHI+TLLLTFFYRYMR ++E G+VYIA PPL
Sbjct: 477 LGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPL 536
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
YK+ +GK ++ YA+ D +LE++ +E + LQRYKGLGEMNA QLWETTMDPET
Sbjct: 537 YKVQQGK----RVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPET 592
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
RTL++VT+ D A+ +LMGDK PRR +IE+N ++
Sbjct: 593 RTLLQVTLKDAIDADETFEMLMGDKVEPRRNFIEENARY 631
>ref|YP_077288.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580]
gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580]
Length = 639
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/639 (54%), Positives = 454/639 (71%), Gaps = 18/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ +I V I
Sbjct: 7 NNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVAI 66
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
KD S++V D+GRG+P G H MG P V+VI T+LHAGGKF GYK SGGLHGVG+SVV
Sbjct: 67 EKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVV 126
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS L+V + RDG ++ Q FE G P LK +G +GT F PD +IF+ T
Sbjct: 127 NALSTELDVTVYRDGKIHYQEFERG-VPKADLKVIGDT--EVTGTTTHFKPDPEIFTETT 183
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
++ ++T++ R++E AFL K VK+++ D R E+ YE G++ +VE+LN +E +
Sbjct: 184 EYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHE 243
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG VEVALQYND ++ NI SF NN+ T +GG+HE G K+ +T+ +NDYA
Sbjct: 244 EPV-YIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYA 302
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
R+ + KE D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I +++ SE
Sbjct: 303 RRNGVFKESDPNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARTITDALFSE 360
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
L FLLEN + A +V K + A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 361 ALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTR--RKSALEVSNLPGKLADCSSK 418
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N E+ +M+
Sbjct: 419 DPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 478
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
+G G+G DFNLE Y K++IMTDAD DGAHI+TLLLTFFYRYMR ++E G+VYIA PPL
Sbjct: 479 LGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPL 538
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
YK+ +GK ++ YA+ D +LE++ +E + LQRYKGLGEMNA QLWETTMDPET
Sbjct: 539 YKVQQGK----RVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPET 594
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
RTL++VT+ D A+ +LMGDK PRR +IE+N ++
Sbjct: 595 RTLLQVTLKDAIDADETFEMLMGDKVEPRRNFIEENARY 633
>ref|YP_001419685.1| GyrB [Bacillus amyloliquefaciens FZB42]
gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42]
Length = 638
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/638 (53%), Positives = 455/638 (71%), Gaps = 16/638 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y+++ IQVLEGL+AVRKRPGMYIGST++ GLHHL+WEIVDN++DEAL+G+ DI + I
Sbjct: 6 NSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIEI 65
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
KD S++V D+GRG+P G Q MG P V+VI T+LHAGGKF GYK SGGLHGVG+SVV
Sbjct: 66 EKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS L+V + RDG ++ Q +E G PV L+ +G K+GT+ F+PD +IF TI
Sbjct: 126 NALSTTLDVTVHRDGKIHYQAYERG-VPVADLEVIGDT--DKTGTITHFVPDPEIFKETI 182
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-T 246
+ ++ +S R++E AFL K V +++ D R E+HYE G++ +VEYLN KE +
Sbjct: 183 VYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHE 242
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
IY+EG+ VEVALQYND ++ NI SF NN+ T +GG+HE G K+ +T+ +NDYAR
Sbjct: 243 EPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYAR 302
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
+ + KE D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I +++ S
Sbjct: 303 RKGIFKENDPNLSGDDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARTITDTLFSSA 360
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L FLLEN + A +V K + A AR AA+KAR+ +R +K+ + L GKL SK+
Sbjct: 361 LETFLLENPDSARKIVEKGLMAARARMAAKKARELTR--RKSALEISNLPGKLADCSSKD 418
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
+ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N E+ +M+ +
Sbjct: 419 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 478
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+G DFNLE Y K++IMTDAD DGAHI+TLLLTFFYRYMR ++E G+VYIA PPLY
Sbjct: 479 GTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 538
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPETR 604
K+ +GK ++ YA+ D +L++L +E + LQRYKGLGEMNA QLWETTMDP TR
Sbjct: 539 KVQQGK----RVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWETTMDPATR 594
Query: 605 TLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TL++V ++D A+ +LMGDK PRR +IE N ++
Sbjct: 595 TLLQVNLEDAMDADETFEMLMGDKVEPRRNFIEANARY 632
>ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
ref|ZP_01371779.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2]
dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
gb|EAT50521.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2]
Length = 644
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/643 (53%), Positives = 457/643 (71%), Gaps = 14/643 (2%)
Query: 4 KKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGD 63
K+ I N+YN I+VLEGL+AVRKRPGMYIGST GLHHL++EIVDN++DEAL+G+ D
Sbjct: 8 KETIPTNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCD 67
Query: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122
I+V I+KD S+SV D+GRG+P H +G P V+V T+LHAGGKF YK SGGLHG
Sbjct: 68 TIEVTIHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHG 127
Query: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182
VG SVVNALS WL VE+ +DG++Y Q F G K T L +G +++GT +TF PD +
Sbjct: 128 VGMSVVNALSTWLHVEVRKDGNIYHQEFMRG-KTKTELAVIGQVDPNQTGTTITFSPDPE 186
Query: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242
IF F F+T++ RL+E +FL K V ++L D R D E +++ G+ DFV+Y+N K
Sbjct: 187 IFEDTVFLFDTLAHRLRELSFLNKKVSITLIDAREDKK--EVYYHTGGIYDFVKYINRSK 244
Query: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301
E+L P IY E + QVEV++QYNDG+ +N+ S+ NN+ T +GG+HE+G K+A+T+
Sbjct: 245 ESLHPEPIYFEAEKDGVQVEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAALTRVA 304
Query: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361
NDYARK N+LK + NL G D REGL+AV+S+ VPE QFEGQTK KLG+ R IV+S
Sbjct: 305 NDYARKNNILKANEANLSGEDIREGLTAVISVKVPEP--QFEGQTKTKLGNSEIRSIVDS 362
Query: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421
I E L+ F EN + ++ K+I+A AREAARKAR+ +R +K+ + L GKL
Sbjct: 363 ITGEGLSAFFEENPAIGKKVIEKSIQASRAREAARKARELTR--RKSALEVSALPGKLAD 420
Query: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481
K A+ E+Y+VEGDSAGGSAKQGRDR+FQAILPLRGK+LN EKA++ IL N EI
Sbjct: 421 CSWKEAELCEMYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRA 480
Query: 482 MVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIA 541
M+ +G G+ DF++E Y K++IMTDAD DGAHI+ LLLTFF+RYM+PL+E +VYIA
Sbjct: 481 MITAMGTGISEDFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIA 540
Query: 542 LPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWETTMD 600
PPL+K+ KGK I Y +++ EL L+ E G+ + +QRYKGLGEMNA QLWETTMD
Sbjct: 541 QPPLFKVKKGK----DIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQLWETTMD 596
Query: 601 PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
P RT+++VT++D +A+ ++LMGD PRR++I+DN ++
Sbjct: 597 PAKRTILQVTMEDAIKADELFTILMGDVVEPRREFIQDNAQYV 639
>ref|YP_001485266.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus
SAFR-032]
gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus
SAFR-032]
Length = 642
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/648 (53%), Positives = 459/648 (70%), Gaps = 18/648 (2%)
Query: 1 MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSG 60
M E N+Y+++ IQVLEGL+AVRKRPGMYIGST A GLHHL+WEIVDN++DEAL+G
Sbjct: 1 MYVAMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAG 60
Query: 61 FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 119
+ DI V I KD S++V D+GRG+P G H MG P V+VI T+LHAGGKF GYK SGG
Sbjct: 61 YCTDITVQIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGG 120
Query: 120 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 179
LHGVG+SVVNALS L+V + RDG ++ Q+F+ G PV L+ +G +GT F+P
Sbjct: 121 LHGVGASVVNALSTTLDVTVYRDGKIHYQQFKRG-VPVGDLEIIGET--DVTGTTTHFVP 177
Query: 180 DDKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYL 238
D +IF+ TI+F ++T++ R++E AFL K V + + DLR E+ YE G++ +VE+L
Sbjct: 178 DPEIFTETIEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHL 237
Query: 239 NEDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSA 296
N KE + PV Y+EG+ VEVALQYND ++ NI SF NN+ T +GG+HE G K+
Sbjct: 238 NRSKEVVHEEPV-YIEGERDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTG 296
Query: 297 ITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLAR 356
+T+ +NDYARK + K+ D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR
Sbjct: 297 LTRVINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEAR 354
Query: 357 PIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLS 416
I +S+ SE L FLLEN + A +V K + A AR AA+KAR+ +R +K+ + L
Sbjct: 355 TITDSLFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTR--RKSALEVSSLP 412
Query: 417 GKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKN 476
GKL SK+ +ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N
Sbjct: 413 GKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSN 472
Query: 477 EEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAG 536
E+ +M+ +G G+G DFNLE Y K++IMTDAD DGAHI+TLLLTFFYRYMR ++E G
Sbjct: 473 NEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENG 532
Query: 537 HVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQL 594
+VYIA PPLYK+ +GK ++ Y + D +L++L + + LQRYKGLGEMNA QL
Sbjct: 533 YVYIAQPPLYKVQQGK----RVEYVYNDKQLDELLKSLSQTPKPGLQRYKGLGEMNAAQL 588
Query: 595 WETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
WETTMDP+ RTL++VT++D A+ +LMGDK PRR +IE+N ++
Sbjct: 589 WETTMDPDARTLLQVTLEDAIDADETFEMLMGDKVEPRRNFIEENAQY 636
>gb|ABF50633.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
gb|ABW84390.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
Length = 554
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/560 (57%), Positives = 427/560 (76%), Gaps = 6/560 (1%)
Query: 35 GSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIP 94
GSTD GLHHL+WEIVDN++DEAL+GF +I ++I+K+ ++V D+GRG+P G+HA G
Sbjct: 1 GSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIGKHASGKS 60
Query: 95 TVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGG 154
T +VIF+ILHAGGKFG GYKTSGGLHGVGSSVVNALS+ +V I RD + + +F NGG
Sbjct: 61 TPEVIFSILHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKISKIKFNNGG 120
Query: 155 KPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTD 214
K L +G+A + +GT V F+PD +IF IDF F+TISER++ESAFL +K++L D
Sbjct: 121 KLAQKLTTIGSA--TTTGTTVYFVPDPEIFKVIDFSFSTISERIRESAFLNSGLKITLQD 178
Query: 215 LRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNI 274
R D + E+ + NG+++F+ Y+NE K+ +TP+I +G ++D VE+ALQY+ F++N+
Sbjct: 179 ERTDKYV--EYLFNNGLEEFITYMNEGKKPITPIIIFKGMEKDIDVEIALQYSTEFNENL 236
Query: 275 LSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSIL 334
LSF NNV+T DGGSH G ++ +TK +N+YARK LLKEKDKNL+ +D REGL+A++S+
Sbjct: 237 LSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTREGLTAIISVK 296
Query: 335 VPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREA 394
+PE +Q+EGQTK KLG+ + VE+IV++++ F++LEN A ++ KA+ AR A+E
Sbjct: 297 IPESLIQYEGQTKGKLGTSDVKMAVENIVAKQMQFWMLENKTNAYAIIEKALLARTAKEE 356
Query: 395 ARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQA 454
ARKAR+ +R K+ + LL+GKLTPAQ+KN K NEL+LVEGDSAGGSAK GRDRKFQA
Sbjct: 357 ARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAKSGRDRKFQA 416
Query: 455 ILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDG 514
IL LRGKV+N EKAK+ D++ NEEIN M++ IGAG+G F+LED NY KIIIMTDADTDG
Sbjct: 417 ILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGLGNSFDLEDANYGKIIIMTDADTDG 476
Query: 515 AHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREF 574
AHIQTLLLTFFYR+MRPL+E VYIALPPL+K++ K K K++YAW + EL+ +
Sbjct: 477 AHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKSK--KVSYAWNENELKTKLKHL 534
Query: 575 GKGAILQRYKGLGEMNANQL 594
LQRYKGLGEMNA QL
Sbjct: 535 KDKFELQRYKGLGEMNAEQL 554
>ref|ZP_01188363.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
gb|EAR79965.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
Length = 637
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/631 (52%), Positives = 453/631 (71%), Gaps = 14/631 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y + I++L+GL+AVRKRPGMYIGST GLHHL+WE+VDN++DE L+G+GD I+V IN+
Sbjct: 9 YGAEQIEILKGLEAVRKRPGMYIGSTGIRGLHHLVWEVVDNSIDEYLAGYGDKIEVTINE 68
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRG+P +H G+P QV+ T LHAGGKF YK SGGLHGVG SVVNA
Sbjct: 69 DNSITVEDWGRGIPAEEHPETGLPAAQVVMTTLHAGGKFNNNSYKVSGGLHGVGISVVNA 128
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLE+ +G+ Y QR+E G P T +K+GT+ +++GT+++F PD +IF +FK
Sbjct: 129 LSEWLELTTYWNGNEYYQRYERG-YPKTKFQKLGTS--NRNGTIISFKPDPEIFDVTEFK 185
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP-VI 249
+ T++ RL+ESAFL K + + L D R D E F Y+ G++ FVEYLN++++ + +I
Sbjct: 186 YETLAHRLQESAFLNKELSLILIDKRSDKTKKEVFQYDGGIKAFVEYLNKNRQVINEDII 245
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y E ++ D+ +EVALQYN+G+++ I S+ NN+ T DGG H TG K+A+TKA+N++A++ N
Sbjct: 246 YTEKENGDYYIEVALQYNEGYNERIFSYANNINTVDGGYHLTGFKTALTKAINNFAKQNN 305
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK+ D L G+D REGL+AV+++ +P QFEGQTK KLG+ R IVES + + L+
Sbjct: 306 LLKQSDPTLTGNDVREGLTAVVNVKLPNP--QFEGQTKSKLGNSEIRSIVESNIYDYLSL 363
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L N EV +V KAI+A AR+A++KAR+ +R +KN + L GKL S+ +K
Sbjct: 364 YLDSNPEVGKKIVDKAIQAIRARQASKKARELTR--RKNALNSHSLPGKLADCASRKPEK 421
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
+EL+LVEGDSAGGSAKQGR+R FQAILPL+GK++N E+A++ IL N EI T++ +G G
Sbjct: 422 SELFLVEGDSAGGSAKQGRNRHFQAILPLKGKIMNVERARLDKILSNNEIATIISALGTG 481
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G +FN++ + Y KIIIMTDAD DGAHI TLLLT FYRYM L++ G++YIA PPLYK+S
Sbjct: 482 IGQEFNIDKLRYHKIIIMTDADVDGAHIATLLLTLFYRYMPELIKEGYIYIAQPPLYKVS 541
Query: 550 KGKGKTEKIAYAWTDGELEDLRREF-GKGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
K I Y +TD ELE L+RE K +QRYKGLGEMN QLWETTM+PETR L+R
Sbjct: 542 WKKN----IRYLYTDKELESLKRELENKSYSIQRYKGLGEMNPRQLWETTMNPETRKLLR 597
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDN 639
+ IDD A+ + LMG A+ RR++I N
Sbjct: 598 IEIDDEIEADEIFTRLMGSNASLRREFIISN 628
>ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 636
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/639 (53%), Positives = 462/639 (72%), Gaps = 18/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST + GLHHL+WE+VDN++DEAL+GF I V I
Sbjct: 6 NTYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEVVDNSIDEALAGFCTKIDVTI 65
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S++V D+GRG+P G+H + PT++V+ T+LHAGGKFG GYK SGGLHGVG SVV
Sbjct: 66 HEDNSITVIDNGRGIPVGEHPKLKKPTLEVVLTVLHAGGKFGGEGYKVSGGLHGVGVSVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS L + RDG +Y+Q F+ G P +K +G + GTV+TF PD +IF+ T
Sbjct: 126 NALSESLVATVKRDGHIYQQEFKRG-VPQYGVKVIGDT--DEYGTVITFKPDAEIFTETT 182
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT- 246
+ + + R++E AFL K ++++L D R + YE G+ FVEYLN+++E L
Sbjct: 183 VYDYEVLQSRIRELAFLNKELEINLKDERTGAS--HSYKYEGGIISFVEYLNQNREPLNQ 240
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
P IY+EG + QVE+A+QYND F++NI SF NN+ T +GG+HE+G KSA+T+ +NDYAR
Sbjct: 241 PPIYVEGNKDNIQVEIAIQYNDNFNENIYSFANNIHTHEGGTHESGFKSALTRVINDYAR 300
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
KTN+LK+ + NL G D REG++A++S+ +P+ QFEGQTK KLG+ R IVES+++EK
Sbjct: 301 KTNVLKDSNSNLSGDDVREGIAAIISVKIPDP--QFEGQTKTKLGNSEVRGIVESLLAEK 358
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L FL EN A ++ K+++A AREAARKAR+ +R +K+ + L GKL SK+
Sbjct: 359 LQEFLEENPSTAKRIMEKSMQAARAREAARKARELTR--RKSALEVSSLPGKLADCSSKD 416
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
A +ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N EI ++ +
Sbjct: 417 AAISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNMEIRAIITAL 476
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+ DF+L Y KIIIMTDAD DGAHI+TLLLTFF+RYMR L+EAG+VYIA PPLY
Sbjct: 477 GTGISEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQPPLY 536
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPETR 604
K+ K K + YA+ D + ++ +EFG+G+ +QRYKGLGEMNA QLWETTMDPE+R
Sbjct: 537 KLEKNK----TVRYAYNDKQRAEIMKEFGEGSKVNVQRYKGLGEMNAGQLWETTMDPESR 592
Query: 605 TLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
TL++V I+D +A+ +LMGD PRR +I ++ K+
Sbjct: 593 TLLQVNIEDAIKADAIFDMLMGDNVEPRRNFIHEHAKYV 631
>ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
methanogenic archaeon RC-I]
emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
methanogenic archaeon RC-I]
Length = 635
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/640 (52%), Positives = 454/640 (70%), Gaps = 17/640 (2%)
Query: 6 EITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDI 65
E+ Y+ +IQVLEGL+AVRKRP MYIGSTD GLHHL++E+VDN++DEAL+G+ + I
Sbjct: 4 EVPAQTYDASSIQVLEGLEAVRKRPSMYIGSTDYRGLHHLVYEVVDNSIDEALAGYCNAI 63
Query: 66 KVVINKDGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 124
V IN +GSV+V D+GRG+P H P ++++ TILHAGGKF YK SGGLHGVG
Sbjct: 64 DVTINPNGSVTVTDNGRGIPVEMHEKYKKPALEIVMTILHAGGKFDNRTYKVSGGLHGVG 123
Query: 125 SSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF 184
SVVNALS +LEVE+ R+G V+ QR+E G KPV +K +G ++GT TF PD IF
Sbjct: 124 VSVVNALSEYLEVEVKRNGKVFFQRYEKG-KPVCEVKIIGET--DQTGTKTTFKPDKSIF 180
Query: 185 STIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKET 244
T++F+F+ ++ RL+E A+L K ++++L+DL E+HYE G+ F+EYLN+DK
Sbjct: 181 ETVEFQFDILANRLRELAYLNKGIRITLSDLGAQKS--AEYHYEGGINQFIEYLNQDKTV 238
Query: 245 LTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMND 303
L P IY E + +VE+++QYNDG+S+ IL+F NN+ T +GG+H +G ++A+T+ +ND
Sbjct: 239 LHPKPIYFEREKDTTKVEISMQYNDGYSEVILAFANNINTHEGGTHLSGFRAALTRTVND 298
Query: 304 YARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIV 363
YARK N+LK D L G D REGL+A++S+ + QFEGQTK KLG+ + IVES+V
Sbjct: 299 YARKNNMLK-GDMVLSGEDIREGLTAIISVKLTNP--QFEGQTKTKLGNSDVKGIVESLV 355
Query: 364 SEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQ 423
+ L +L EN A ++ K ++A AREAARKAR+ +R +K+ + L GKL
Sbjct: 356 GDGLNDYLEENPADARKIIEKTVQAFQAREAARKARELTR--RKSALEGSTLPGKLADCS 413
Query: 424 SKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMV 483
K+A K ELY+VEGDSAGGSAKQGR+R FQAILPLRGK+LN EKA++ IL++ EI ++
Sbjct: 414 EKDASKCELYIVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLNKILESAEIRALI 473
Query: 484 YTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALP 543
+G GVG DF L+ Y KII+MTDAD DGAHI+TLLLTFFYRYM+ +VEAG VYIA P
Sbjct: 474 TALGTGVGEDFVLDKARYHKIILMTDADVDGAHIRTLLLTFFYRYMQQIVEAGFVYIAQP 533
Query: 544 PLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWETTMDPE 602
PLY++ KGK EK Y ++D EL + G+ + +QRYKGLGEMN QLW TTMDP
Sbjct: 534 PLYRIK--KGKEEK--YVYSDRELNEALEAMGRTNVSIQRYKGLGEMNPEQLWSTTMDPA 589
Query: 603 TRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TRT+ +V ++D+ A+R ++LMGDK PRR++I N KF
Sbjct: 590 TRTMYQVKLEDVIEADRTFTLLMGDKVEPRREFIVKNAKF 629
>ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759]
gb|EDP26661.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759]
Length = 639
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/640 (57%), Positives = 463/640 (72%), Gaps = 15/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+NY + IQVLEGL+AVRKRPGMYIGST +TGLHHL++EIVDN+VDEAL+G+ I+V I
Sbjct: 4 DNYGAEQIQVLEGLEAVRKRPGMYIGSTSSTGLHHLVYEIVDNSVDEALAGYCTHIQVYI 63
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
N+D S++V D GRG+P G H GIP V+V+FTILHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 64 NEDNSITVVDDGRGIPVGIHKKQGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 123
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS WLEVEITR+G +Y+QR+E G K + L+ +G AP+ SGT VTF+PD IF
Sbjct: 124 NALSTWLEVEITRNGKIYKQRYEKG-KVMYKLQVIGDAPEGVSGTKVTFLPDHTIFEDNV 182
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TP 247
+ ++ + RL+E AFL K +K+SLTD R + FHYE G+++FV YLN ++ L
Sbjct: 183 YDYDILRNRLREMAFLTKGLKISLTDKRITPEKVRSFHYEGGIKEFVSYLNRHRDPLYNE 242
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
VIY EG VEVALQ+ND ++++ SFVNN+ T +GG+H TG KSAITK NDYARK
Sbjct: 243 VIYCEGMRDGISVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAITKVFNDYARK 302
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
N++KEKD NL G D REGL+A++SI + + QFEGQTK KLG+ ARP VES+V+E+L
Sbjct: 303 NNIIKEKDDNLSGDDLREGLAAIVSIKISDP--QFEGQTKQKLGNSEARPAVESVVTEQL 360
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
T++L +N ++A +V KA A+ AR AARKARD +R K N D L GKL K+
Sbjct: 361 TYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVAR--KANLSDNMALPGKLADCSDKDP 418
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
K E+Y+VEGDSAGGSAK R R QAILPLRGK+LN EKA++ IL NEEI M+ G
Sbjct: 419 KNCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIKAMITAFG 478
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+ +FN+E + Y+KIIIMTDAD DGAHI TLLLTFFYR+M L+ GHVY+A PPLYK
Sbjct: 479 TGIHENFNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYK 538
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGK--GAILQRYKGLGEMNANQLWETTMDPETRT 605
+ K K K+ YA++D EL + E G+ +QRYKGLGEM+A QLWETTMDPE R
Sbjct: 539 LEKNK----KVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRI 594
Query: 606 LIRVTIDDLARAERRVS--VLMGDKAAPRRQWIEDNVKFT 643
L+RV IDD +E ++ VLMGDK PRR++IE N K+
Sbjct: 595 LLRVAIDDDDESEIDMTFNVLMGDKVEPRREFIETNAKYV 634
>ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
gb|EDP11646.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
Length = 648
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/637 (51%), Positives = 450/637 (70%), Gaps = 14/637 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
++Y D IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+GF DI++ I
Sbjct: 19 HSYTADDIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGFATDIEIAI 78
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
KD + V D+GRGMP G GI V+ IFT+LHAGGKFG G YK SGGLHGVG+SVV
Sbjct: 79 EKDNVIRVEDNGRGMPVGIVEKTGISGVETIFTVLHAGGKFGGGAYKVSGGLHGVGASVV 138
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS WLEV + ++G + RFENGGKP LK +G K G+VV F D IF+ T
Sbjct: 139 NALSEWLEVTVHQNGKKHFLRFENGGKPSGALKVIGDT--DKHGSVVRFKADASIFTETQ 196
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
+ F+T++ R+++ AFL K +++ + D R ++ E+ Y+ G++ +VEYLN++K L
Sbjct: 197 VYSFDTLNTRIRQLAFLNKGIRLVIIDEREEEAKRIEYKYDGGIRQYVEYLNKNKNVLHE 256
Query: 248 -VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
VIY+EG ++ EVALQYNDG+ NI SF NN+ T +GG+HE G + A+T+ +N YAR
Sbjct: 257 DVIYVEGLEEGILAEVALQYNDGYMPNIYSFCNNINTMEGGTHEDGFRLALTRVINAYAR 316
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
+ NL+K KD+ L G D REGL+A++S+ P+ Q+EGQTK KLG+ R IV I+ ++
Sbjct: 317 ENNLIK-KDETLAGDDVREGLTAIISVKHPDP--QYEGQTKTKLGNSEVRKIVSGILGDQ 373
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L FL+EN A +V K + A AR AA+KAR+ +R +K+ + L GKL SK+
Sbjct: 374 LERFLIENPTTAKIIVEKGVLASKARMAAKKARELTR--RKSALEITSLPGKLADCSSKD 431
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
A + E+Y+VEGDSAGGSAKQGR+ KFQAILPLRGK+LN EKA++ I +N EI +MV
Sbjct: 432 ASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLHRIFENNEIRSMVTAF 491
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+G + ++ + Y KI+IMTDAD DGAHI TL+LTFFYR++RP++E G+VYIA+PPL+
Sbjct: 492 GCGIGDEIDISKLRYHKIVIMTDADVDGAHICTLMLTFFYRFLRPVIEGGYVYIAMPPLF 551
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTL 606
K++KG ++ Y + + E+E +R E G+ +QRYKGLGEMN QLWETTMDP RTL
Sbjct: 552 KVAKGN----RVEYVYKEEEMERVRAEMGENVNVQRYKGLGEMNPEQLWETTMDPAFRTL 607
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
+V I+D A+ +LMG++ PRR++I++N K+
Sbjct: 608 KQVNIEDAVEADAIFEMLMGEEVEPRREFIQENAKYA 644
>ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT]
gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT]
Length = 628
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/632 (53%), Positives = 449/632 (71%), Gaps = 18/632 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ I+V+EGL+AVR RP MYIGSTD GLHHL++E+VDN+VDEA++G+ +I VVI+
Sbjct: 6 YDASHIKVMEGLEAVRHRPSMYIGSTDVHGLHHLVYEVVDNSVDEAMAGYCKEISVVIHG 65
Query: 72 DGSVSVADSGRGMPTGQHAM-GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
DGSVSV D GRG+P H P V+++ T+LHAGGKF Y SGGLHGVG SVVNA
Sbjct: 66 DGSVSVKDDGRGIPVDIHPQYNRPAVEIVMTVLHAGGKFDHDTYHVSGGLHGVGVSVVNA 125
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLEVE++R+G VYRQR+E G +PV+ L++ G + +GT V F PD +IF DF
Sbjct: 126 LSEWLEVEVSREGRVYRQRYERG-RPVSDLQETGVS--ENTGTTVRFKPDPEIFEVTDFS 182
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP-VI 249
F+ +S RL+E AFL + +K+S+TD R + FHY+ G+ FV+YLN+ KE L P I
Sbjct: 183 FDVLSSRLRELAFLNRGLKISITDERSGRS--KTFHYDGGIISFVQYLNKSKEVLHPNPI 240
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y D VEVA+QYN +++++ +F NN+ T++GG+H +G ++A+TK +ND+ R+
Sbjct: 241 YFSRVRDDVSVEVAMQYNTSYNESVFTFANNINTREGGTHLSGFRAALTKTVNDFVREKK 300
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK D L G D REGL AV+S+ +P+ QFEGQTK +LG+ R +VES+VSE L
Sbjct: 301 LLK-GDAKLTGDDLREGLVAVVSVRLPDP--QFEGQTKTRLGNSAVRGLVESLVSEGLME 357
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+ N +VA +V KA +A AREAARKA++ +R +K L GKL ++ K
Sbjct: 358 YFELNPQVAEAIVEKATEAMRAREAARKAKEITR--RKTALTSSGLPGKLADCVERDPAK 415
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
+ELY+VEG+SAGGSAKQGR+R FQA+LPLRGK+LN E+A++ +LKNEEI ++ +G G
Sbjct: 416 SELYIVEGESAGGSAKQGRNRHFQAVLPLRGKILNVERARLDKMLKNEEIRNLITALGTG 475
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF++ Y KIIIMTDAD DG+HI+TLLLTFFYRYM+PL+EAG+VYIA PPLY++
Sbjct: 476 IGDDFDITKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVYIAQPPLYQVR 535
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
KGK + YA++D EL L E GK A++QRYKGLGEMN QLWETTM+PE RTL+RV
Sbjct: 536 KGKS----VKYAYSDEELAKL-LEDGK-AVVQRYKGLGEMNPEQLWETTMNPEKRTLLRV 589
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
T+ D A+ SVLMG++ PRR +IE + +
Sbjct: 590 TLKDAVEADEIFSVLMGEQVEPRRVFIETHAR 621
>gb|ABI96238.1| DNA topoisomerase IV subunit B [Spiroplasma insolitum]
Length = 554
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/560 (58%), Positives = 426/560 (76%), Gaps = 6/560 (1%)
Query: 35 GSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIP 94
GSTD GLHHL+WEIVDN++DEAL+G+ +I V I+K+ +++V D+GRG+PTG+HA G
Sbjct: 1 GSTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTIHKNNAITVQDNGRGVPTGKHASGKS 60
Query: 95 TVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGG 154
T ++IF++LHAGGKFG GYKTSGGLHGVGSSVVNALS+ +V+I RD ++ +F NGG
Sbjct: 61 TPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSVFDVKIYRDQKIWHIKFGNGG 120
Query: 155 KPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTD 214
+ L ++GT ++ + VTF+PD KIF IDF F+TISER++ESAFL VK++LTD
Sbjct: 121 QVKQPLTQIGTTNETGT--TVTFLPDSKIFKVIDFSFSTISERIRESAFLNSGVKITLTD 178
Query: 215 LRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNI 274
R D + E+ + NG+++F+ Y+NE K+ +TP++ M+G +++ +VEVALQY+ F++N+
Sbjct: 179 DRADKTV--EYLFNNGLEEFISYMNEGKKNITPIVMMKGLEKEIEVEVALQYSTEFNENL 236
Query: 275 LSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSIL 334
LSF NNV+T +GGSH G +S +TK +NDYARK LLKEKDKNL+ +D REGL+A++S+
Sbjct: 237 LSFANNVKTSEGGSHVVGFRSGLTKVINDYARKEGLLKEKDKNLDSTDTREGLTAIISVK 296
Query: 335 VPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREA 394
VPE +Q+EGQTK KLG+ AR VE IV+++ F+L EN A ++ KA+ AR+ RE
Sbjct: 297 VPESLIQYEGQTKGKLGTYDARTAVEIIVTKQFGFWLTENKTSAYAIIEKALLARNVREE 356
Query: 395 ARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQA 454
ARKAR+ +RN KK LL+GKLTPAQ++N NE++LVEGDSAGGSAK GRDR+FQA
Sbjct: 357 ARKAREAARNNKKRGNSDRLLTGKLTPAQNRNKLSNEIFLVEGDSAGGSAKLGRDRRFQA 416
Query: 455 ILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDG 514
ILPLRGKV+N EKAKM D++ NEEIN M+ IGAGVG F++ED NY K+IIMTDADTDG
Sbjct: 417 ILPLRGKVINAEKAKMQDLMNNEEINVMINAIGAGVGNAFDIEDANYGKVIIMTDADTDG 476
Query: 515 AHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREF 574
AHIQTLLLTFFYRYMRPL+E VYIALPPL+K+ K K KI YAW + EL+
Sbjct: 477 AHIQTLLLTFFYRYMRPLIENHRVYIALPPLFKILNTKNK--KIDYAWDENELKTKLSTL 534
Query: 575 GKGAILQRYKGLGEMNANQL 594
LQRYKGLGEMNA QL
Sbjct: 535 KDKFELQRYKGLGEMNAEQL 554
>ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
BAA-613]
gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
BAA-613]
Length = 637
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/636 (54%), Positives = 454/636 (71%), Gaps = 16/636 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y D IQ+LEGL+AVRKRPGMYIGST A GLHHL++EIVDNAVDEAL+G+ D I V IN+
Sbjct: 5 YGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIDVTINE 64
Query: 72 DGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRG+P Q G+P V+V+FTILHAGGKFG GGYK SGGLHGVG+SVVNA
Sbjct: 65 DNSITVMDDGRGIPVDIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASVVNA 124
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLEV++ +DG++Y+QR+E G K LK VG + GT VTF+PD +IF +
Sbjct: 125 LSEWLEVQVYKDGNIYQQRYERG-KVTYPLKIVGKCGPEQHGTRVTFLPDKEIFEETVYD 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-PVI 249
++T+ RL+E+AFL KN+K+ L D R D+ + FHYE G+++FV YLN+ K + VI
Sbjct: 184 YDTLKIRLRETAFLTKNLKIILKDDR-DEKKEKVFHYEGGIKEFVTYLNKGKTPIYDQVI 242
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y EG + VEV++Q+ND +++NI +FVNN+ T +GG+H TG K+A+TK NDYAR+
Sbjct: 243 YCEGTREGVYVEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYAREKK 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK+ + NL G D REGL+A++S+ + + QFEGQTK KLG+ AR V++IVSE+LT+
Sbjct: 303 LLKDSEDNLSGEDIREGLTAIISVKIEDP--QFEGQTKQKLGNSEARAAVDNIVSEQLTY 360
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL +N VA + K+I A+ AR AARKARD +R +K+ D L GKL KN +
Sbjct: 361 FLEQNPAVAKSMCEKSILAQRARAAARKARDLTR--RKSALDGMALPGKLADCSDKNPEN 418
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+Y+VEGDSAGGSAK R R QAILPLRGK+LN EKA+M I N EI M+ G G
Sbjct: 419 CEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTG 478
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+ DF++ + Y KIIIMTDAD DGAHI TLLLTF YR+M L++ G+VY+A PPLYK+
Sbjct: 479 IHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKVE 538
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGK--GAILQRYKGLGEMNANQLWETTMDPETRTLI 607
K K K+ YA++D EL + +E G+ +QRYKGLGEM+A QLWETTMDPE R L+
Sbjct: 539 KNK----KVWYAYSDDELNSILKEIGRDNSNKIQRYKGLGEMDAEQLWETTMDPERRILL 594
Query: 608 RVTIDDLARAERRV--SVLMGDKAAPRRQWIEDNVK 641
RVT+D+ +E + + LMGD+ PRR++IE N K
Sbjct: 595 RVTMDEETTSEVDLTFTTLMGDQVEPRREFIEANAK 630
>ref|ZP_01576116.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10]
gb|EAV69758.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10]
Length = 642
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/639 (53%), Positives = 462/639 (72%), Gaps = 21/639 (3%)
Query: 9 INN---YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDI 65
INN Y++ IQVLEGL+AVRKRPGMYIGST + GLHHL++EIV N++DEAL+G D I
Sbjct: 4 INNNSIYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVANSIDEALAGRCDII 63
Query: 66 KVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 124
KV+++KD SV+V D+G G+P G H MGIPT++V+ TILHAGGKFG G Y SGGLHGVG
Sbjct: 64 KVIVHKDNSVTVTDNGSGIPVGIHPKMGIPTLEVVHTILHAGGKFGSGAYSVSGGLHGVG 123
Query: 125 SSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF 184
+SVVNALS +EVE+ R+G +YRQ++ G KP+T++ VG ++GT+ TF PD +IF
Sbjct: 124 ASVVNALSESMEVEVKREGHIYRQKYSRG-KPLTSVDIVGDT--DETGTITTFKPDPEIF 180
Query: 185 STIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKET 244
I + F+ + R +E AFL K + + L D R ++ + + HYE G+ FVEYLN+ KE
Sbjct: 181 EEIVYDFDAMISRYREMAFLNKGINIKLIDERPEESVEKNLHYEGGIISFVEYLNKSKEP 240
Query: 245 LT-PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMND 303
L VIY+EG VEVA+QYND +++++ ++ NN+ T +GG+H TG ++AITK +ND
Sbjct: 241 LHDEVIYLEGSRDANIVEVAMQYNDSYNESVFTYANNIATTEGGTHLTGFRAAITKVLND 300
Query: 304 YARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIV 363
YARK N+LKE DKNL G D REGL+AVLS+ +PE QFEGQTK KLG+ R +VE++V
Sbjct: 301 YARKFNILKENDKNLSGEDVREGLTAVLSVKLPEP--QFEGQTKTKLGNSEIRTLVENVV 358
Query: 364 SEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQ 423
S+KL FL E+ VA ++ K+I A AREAARKAR+ +R +K+ D L GKL
Sbjct: 359 SDKLFIFLEEHPAVAKIILDKSITAARAREAARKARELTR--RKSAMDSSTLPGKLADCS 416
Query: 424 SKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMV 483
K+ K E+++VEGDSAGGSAKQGRDRK QAILPL GK+LN EK++M + NE+++ ++
Sbjct: 417 EKDPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRMDKVYDNEKLSPVI 476
Query: 484 YTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALP 543
+GAG+G +F+ + YDKIIIM DAD DG+HI+ LLLTFF+RYMRPLVE GHVYIA+P
Sbjct: 477 IALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMP 536
Query: 544 PLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-----KGAILQRYKGLGEMNANQLWETT 598
PL+K+ KGK + YA+ D EL+ + +E G +QR+KGLGEMN +QLWETT
Sbjct: 537 PLFKVYKGKEE----YYAYDDIELDKIFKERGWRKDDPNVNIQRFKGLGEMNPDQLWETT 592
Query: 599 MDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIE 637
M+PETRT+I+V ++D A+ MGDK PRR++I+
Sbjct: 593 MNPETRTIIKVDLEDAISADEVFCKFMGDKVEPRREYIQ 631
>ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4]
gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter
tengcongensis MB4]
Length = 654
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/633 (53%), Positives = 464/633 (73%), Gaps = 16/633 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y IQ+LEGL+AVRKRPGMYIGST + GLHHL++E+VDN++DEAL+G+ +I V I+K
Sbjct: 28 YTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHK 87
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRG+PT H +G P V+V T+LHAGGKF YK SGGLHGVG SVVNA
Sbjct: 88 DNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNA 147
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS LEV + + G V+RQ +E G P T L+ +G ++GT++TF PD +IF I F
Sbjct: 148 LSERLEVIVKQRGKVFRQVYERG-VPKTPLEVIGET--EETGTIITFKPDKEIFEEIVFD 204
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++ +++RL+E AFL K + + L D R D E F+YE G+ FV+YLN +KE L I
Sbjct: 205 YDILAQRLRELAFLNKGINIKLIDER--DGKEEVFNYEGGLIAFVKYLNRNKEVLHEEPI 262
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
YME ++ D++VEV +QYND +++NI SF NN+ TK+GG+H G KSA+TK +NDYA+K
Sbjct: 263 YMEAKNTDYEVEVCMQYNDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAKKYG 322
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
++K+ +KNL+G D REGL+A++S+ + ++ QFEGQTK +LG+P R IVE +V+EKL+
Sbjct: 323 MIKDGEKNLQGEDVREGLTAIVSVKL--KNPQFEGQTKTRLGNPEMRSIVEGVVTEKLSA 380
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L EN VA +V KA++A AREAARKAR+ +R +K+ + L GKL K+ K
Sbjct: 381 YLEENPSVARIIVEKALQAARAREAARKARELTR--RKSALENTALPGKLADCSEKDPSK 438
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
EL++VEGDSAGGSAK GR+ +FQAILPLRGK+LN EKA++ I NEEI +++ +G G
Sbjct: 439 CELFIVEGDSAGGSAKAGRNSRFQAILPLRGKILNVEKARLDKIFSNEEIRSIITALGTG 498
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF++ + Y K+IIMTDAD DG+HI+TLLLTFF+R+M+PL+E GH+YIA PPLYK++
Sbjct: 499 IGEDFDISKLRYHKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKIT 558
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGK K+ YA++D EL+ + E G+ ++QRYKGLGEMNA+QLWETTMDPE RT+++
Sbjct: 559 KGK----KVYYAYSDRELDKILSEIGRENIVVQRYKGLGEMNADQLWETTMDPEKRTMLK 614
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
VT++D A+ ++LMGDK PRR++IE K
Sbjct: 615 VTLEDAIAADEIFTILMGDKVEPRREFIEKYAK 647
>ref|YP_001038771.1| DNA gyrase, B subunit [Clostridium thermocellum ATCC 27405]
gb|ABN53578.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405]
Length = 641
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/644 (53%), Positives = 458/644 (71%), Gaps = 20/644 (3%)
Query: 9 INN----YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDD 64
INN Y++ IQVLEGL+AVRKRPGMYIGST + GLHHL++EI+DN++DEAL+GF ++
Sbjct: 4 INNEMSKYDESNIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIMDNSIDEALAGFCNE 63
Query: 65 IKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGV 123
IKV+I+KD S++ D+GRG+P G H +GI TV+V+ TILHAGGKF GYK SGGLHGV
Sbjct: 64 IKVIIHKDNSITNIDNGRGIPVGIHPKLGISTVEVVHTILHAGGKFDGQGYKVSGGLHGV 123
Query: 124 GSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKI 183
G+SVVNALS +LEVE+ RDG +YRQR+E G KPVT ++ +G + +GT TF PD +I
Sbjct: 124 GASVVNALSEFLEVEVFRDGHIYRQRYERG-KPVTPVEIIGDT--NLTGTKTTFKPDPEI 180
Query: 184 FSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKE 243
F +F F + RL+E AFL K +K+ L D R ++P+ + HYE G+ FVEY++ +K+
Sbjct: 181 FEVTEFDFEVLLTRLRELAFLNKGLKIILRDERPEEPVEKHLHYEGGIVSFVEYMDRNKD 240
Query: 244 TLTPVIYMEGQDQDFQVEVALQYN-DGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMN 302
L IY +G VE+A+QYN D + +NI SF NN+ T +GG+H TG K+AITK +N
Sbjct: 241 PLHEPIYFDGYKDGCYVEIAMQYNKDVYVENIHSFANNISTAEGGTHLTGFKTAITKVLN 300
Query: 303 DYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESI 362
DYA+K N LKE DKNL G D REGL+AV+S+ +P+ QFEGQTK KLG+ R VESI
Sbjct: 301 DYAKKFNFLKENDKNLLGEDVREGLTAVISVKIPDP--QFEGQTKTKLGNSEVRSFVESI 358
Query: 363 VSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPA 422
++EK FL EN V ++ K I + AREAARKAR+ +R +KN + L GKL
Sbjct: 359 INEKFASFLEENPSVTRLILDKCIMSARAREAARKARELTR--RKNVLETSTLPGKLADC 416
Query: 423 QSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTM 482
++ E+++VEGDSAGGSAKQGR+R+FQAILPL GK+LN EKA++ + N+++ +
Sbjct: 417 TERDPSLCEIFIVEGDSAGGSAKQGRNRRFQAILPLWGKMLNVEKARVDKVYGNDKLTPV 476
Query: 483 VYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIAL 542
+ +G +G DF++ + Y KIIIM DAD DGAHI+TLLLTFFYRYM PL+ G+VYIA
Sbjct: 477 IMALGTNIGQDFDITKLRYHKIIIMADADVDGAHIRTLLLTFFYRYMTPLITNGYVYIAQ 536
Query: 543 PPLYKMSKGKGKTEKIAYAWTDGELEDLRREF---GKGAILQRYKGLGEMNANQLWETTM 599
PPLYK++KGK + YA+ D ELE + RE + +QR+KGLGEMN QLW TTM
Sbjct: 537 PPLYKITKGKTE----LYAYNDSELEKIIRENQWKKEECTIQRFKGLGEMNPEQLWTTTM 592
Query: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
DPETRT++RV ++D A+ ++LMGDK PR+++I+ N K
Sbjct: 593 DPETRTILRVELEDAIAADEIFTILMGDKVEPRKEFIQANAKLV 636
>ref|YP_361487.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901]
gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901]
Length = 635
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/635 (56%), Positives = 474/635 (74%), Gaps = 17/635 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y + IQVL+GL+ VRKRP MYIGST+ GLHHL++E+VDN++DEAL+GF + I+V+I+K
Sbjct: 10 YGAEEIQVLKGLEGVRKRPAMYIGSTNEKGLHHLVYEVVDNSIDEALAGFCNRIEVIIHK 69
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
DGS++VAD+GRG+P H +G P V+V+ T+LHAGGKFG GGYK SGGLHGVG SVVNA
Sbjct: 70 DGSITVADNGRGIPVDIHPEVGKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSVVNA 129
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKS-GTVVTFMPDDKIFSTIDF 189
LS WLEV I RDG++Y Q+F G +P+T LK +G KSKS GT++TF PD +IF T++F
Sbjct: 130 LSEWLEVRIKRDGNLYYQKFSRG-EPITELKIIG---KSKSTGTIITFKPDAEIFETVEF 185
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVI 249
++T+++RL E ++L KNVK+ L D R + E F + G++D+++YLN++KE L +I
Sbjct: 186 NYDTLAKRLLELSYLNKNVKIILKDERINKE--EIFEHSGGIKDYLKYLNKNKEPLHKII 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y E + + VEVALQY + FS+NILSF NN+ T +GG+HE G K+A+T+ +NDYA+K N
Sbjct: 244 YFEKEKDEVVVEVALQYCNSFSENILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYN 303
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
L+KE + +L+G D REGL+A++S+ VP+ QFEGQTK KL + R IV+SIVS+ L+
Sbjct: 304 LIKENNLSLQGEDIREGLTAIISVKVPDP--QFEGQTKTKLVNTEVRSIVDSIVSDYLST 361
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+L EN V L+ AI+A AREAARKAR+ +R +K + L GKL K+
Sbjct: 362 YLEENPAVGKKLIENAIRAARAREAARKARELAR--RKTALESNTLPGKLADCSEKDPSL 419
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
ELYLVEGDSAGGSAKQGRDR+FQAILPLRGK+LN EK+++ IL NEEI M+ +G G
Sbjct: 420 CELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITALGTG 479
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
V DF++E Y ++IIMTDAD DGAHI+TLLLTFFYRY+RPL+E G+VYIA PPLYK+
Sbjct: 480 VDKDFDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLYKVK 539
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGK EK Y ++D ELE E G+ G +QRYKGLGEM+ QLWETTM+PETRT+++
Sbjct: 540 --KGKLEK--YLYSDDELERYLNEIGREGVTIQRYKGLGEMDPEQLWETTMNPETRTILK 595
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
VT++D A+A+ ++LMGDK PRR++IE N K
Sbjct: 596 VTLEDAAKADEIFTILMGDKVEPRREFIEKNAKLV 630
>ref|NP_634443.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
Length = 634
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/633 (53%), Positives = 457/633 (72%), Gaps = 15/633 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ IQVLEGL+AVRKRP MYIGSTD GLHHL++E+VDN++DEAL+GF +I V IN
Sbjct: 7 YDASHIQVLEGLEAVRKRPSMYIGSTDGRGLHHLVYEVVDNSIDEALAGFCSEIDVTINP 66
Query: 72 DGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
+GSV+V D+GRG+P H + + ++V+ TILHAGGKF + YK SGGLHGVG SVVNA
Sbjct: 67 NGSVTVIDNGRGIPIDPHPVHKKSALEVVMTILHAGGKFDKNTYKVSGGLHGVGVSVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS W EVE++RDG Y QR+ G KP + ++++GT+ +GT TF PD KIF T DF+
Sbjct: 127 LSEWTEVEVSRDGKKYFQRYIRG-KPESDVREIGTS--DTTGTKTTFKPDTKIFETTDFQ 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++ + RL+E AFL + + ++L DLR + E F+Y G+ +FVEYLN+ K+ L I
Sbjct: 184 YDILLNRLRELAFLNRGLIINLKDLRSPEGQAETFNYSGGIIEFVEYLNKKKQPLHEKPI 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y E Q D VE+A+QY +G+++N+ SF NN+ T +GG+H G K+A+T+ NDY K N
Sbjct: 244 YFERQRDDMVVEIAMQYTNGYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYI-KAN 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
L ++D+ L G D REGL+A++S+ + E QFEGQTK KLG+ + IV+S+V++ L
Sbjct: 303 KLSKEDEKLTGDDVREGLTAIISVKLMEP--QFEGQTKTKLGNSEVKGIVDSLVTDGLAE 360
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+ EN +VA+ ++ KA+ A+ AREAA+KAR+ +R +K+ + L GKL +KN +
Sbjct: 361 YFEENPKVANIILDKALLAQRAREAAKKARELTR--RKSALEVSTLPGKLADCSNKNPAE 418
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+Y+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EK+++A ILKN E+ +++ IG G
Sbjct: 419 CEIYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITAIGTG 478
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
V DF+LE+ Y KIIIMTDAD DGAHI+TLLLT F+RYMR L++AG+VYIA PPLYK+
Sbjct: 479 VSEDFDLENARYHKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPPLYKIK 538
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGK YA++D EL D +E G KG +QRYKGLGEMN QLWETTMDPE+RTL++
Sbjct: 539 KGKMDY----YAYSDKELADKLKELGEKGVAIQRYKGLGEMNPGQLWETTMDPESRTLLQ 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
VT++D RA+ VLMGD+ PRR +IE + K
Sbjct: 595 VTLEDAIRADEIFRVLMGDEVEPRRNFIETHAK 627
>ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
gb|EDO58233.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
Length = 638
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/640 (56%), Positives = 463/640 (72%), Gaps = 15/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+ + IQVLEGL+AVRKRPGMYIGST GLHHL++EIVDN+VDEAL+G+ + I+V I
Sbjct: 3 NNYDAEQIQVLEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNSVDEALAGYCNHIEVFI 62
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
N D S++V D+GRG+P G Q G ++V+FT+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 63 NPDNSITVVDNGRGIPVGIQEKTGKSALEVVFTVLHAGGKFGGGGYKVSGGLHGVGASVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS WLEVE+TRDG VY+Q ++ G +TL+ + AP+ KSGT VTF+PD IF
Sbjct: 123 NALSEWLEVEVTRDGHVYKQTYKRGNVD-STLQIIADAPEDKSGTKVTFLPDKTIFDDWI 181
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-P 247
+ ++T+ RL+E+AFL K +K++LTDLR D P FHYE G+++FVEY+N +E L
Sbjct: 182 YDYDTLRTRLRETAFLTKGLKITLTDLRVDPPKERHFHYEGGIKEFVEYMNRHREALYDK 241
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
VIY EG VEVA+Q+ND +++ I S+VNN+ T +GG+H TG KSAITK NDYARK
Sbjct: 242 VIYCEGLKDGVYVEVAMQHNDSYNEMIHSYVNNINTPEGGTHLTGFKSAITKIFNDYARK 301
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
NLLKEK+ NL G D REG+SA++S+ + E QFEGQTK KLG+ RP+VE+IVSE+L
Sbjct: 302 NNLLKEKEDNLSGEDLREGMSAIVSVKIGEP--QFEGQTKQKLGNSEVRPVVENIVSEQL 359
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
T+FL +N +A ++ K++ A+ AR AAR+AR K N D L GKL K+
Sbjct: 360 TYFLEQNPNIAKIIINKSVMAQRARIAARRAR--DVARKANLADNMALPGKLADCSDKDP 417
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
K E+Y+VEGDSAGGSAK+ R R QAILPLRGK+LN EKA++ IL+N EI M+ G
Sbjct: 418 KNCEIYIVEGDSAGGSAKKARSRATQAILPLRGKILNVEKARIDRILENAEIKAMITAFG 477
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+ +F+++ + Y+KIIIMTDAD DGAHI TLLLTFFYR+M L+ GHVY+A PPLYK
Sbjct: 478 TGIHENFDIDKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYK 537
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPETRT 605
+ K K KI YA++D EL + E G+ +QRYKGLGEM+A QLWETTMDPE R
Sbjct: 538 LEKNK----KIWYAYSDDELNSILNEVGRDQSNKIQRYKGLGEMDAEQLWETTMDPEKRI 593
Query: 606 LIRVTIDDLARAERRVS--VLMGDKAAPRRQWIEDNVKFT 643
L++V IDD +E ++ VLMGDK PRRQ+IE N KF
Sbjct: 594 LLKVAIDDDDESEIDMTFNVLMGDKVEPRRQFIETNAKFV 633
>ref|NP_853202.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum R]
gb|AAP56770.1| ParE/GyrB [Mycoplasma gallisepticum R]
Length = 657
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/639 (51%), Positives = 465/639 (72%), Gaps = 8/639 (1%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
++NYN+ I+VL+GL+ VRKRPGMYIGSTD GLHHL+WE+ DNAVDEAL+G + I+VV
Sbjct: 26 VSNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVV 85
Query: 69 INKDGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127
KDGS+ V D+GRG+P G++ A + TV ++T+LHAGGKF YK SGGLHGVG+SV
Sbjct: 86 HKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 145
Query: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187
VNALS L V + RDG +Y +++GGK + LKKVG + +K GT+V F PD IF I
Sbjct: 146 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNS--TKHGTIVQFWPDPTIFKNI 203
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F I ERL ES+FL K +K+ D + + + F ++G+ ++++Y+NE+K++++
Sbjct: 204 QFNPYMIKERLHESSFLFKGLKIVFVD-ENNPELSQTFIAKDGILEYLKYVNENKKSISK 262
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
+I +G + V+ QY D S+ I+SF N+V+T +GGSHE G K A+ + +NDY++K
Sbjct: 263 IIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSKK 322
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
L+ KDK + SD +EGLS VLS+ VPE+ + +EGQTK+KL + + V I++++L
Sbjct: 323 YKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQL 382
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN A L+ + ++A+EAA+KA+++++ K K ++ +L GKLTPAQ KN
Sbjct: 383 FYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSER-VLYGKLTPAQQKNP 441
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+NE++LVEGDSAGG+AK GRD++FQAILPLRGKV+N EK+++ D+LKNEEI +++ +G
Sbjct: 442 LQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLG 501
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+G +FN++++ Y KIIIMTDADTDGAHIQ LLLTFFYRYM+ L+E G VYIAL PLYK
Sbjct: 502 CGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLYK 561
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+S + K A+AW D +L++LR ++G + QRYKGLGEMN+ QLW TTMDP R LI
Sbjct: 562 IS--AKNSNKSAFAWDDYQLDELRTKYGSYEV-QRYKGLGEMNSEQLWTTTMDPSKRQLI 618
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
+V+I + A+AER+VS+LMGD A+ R+ WI +NV F++EE
Sbjct: 619 QVSIQNAAQAERKVSILMGDDASIRKNWINENVDFSIEE 657
>sp|Q59526|PARE_MYCGA DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) (TopIIB)
Length = 633
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/639 (51%), Positives = 465/639 (72%), Gaps = 8/639 (1%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
++NYN+ I+VL+GL+ VRKRPGMYIGSTD GLHHL+WE+ DNAVDEAL+G + I+VV
Sbjct: 2 VSNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVV 61
Query: 69 INKDGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127
KDGS+ V D+GRG+P G++ A + TV ++T+LHAGGKF YK SGGLHGVG+SV
Sbjct: 62 HKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121
Query: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187
VNALS L V + RDG +Y +++GGK + LKKVG + +K GT+V F PD IF I
Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNS--TKHGTIVQFWPDPTIFKNI 179
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F I ERL ES+FL K +K+ D + + + F ++G+ ++++Y+NE+K++++
Sbjct: 180 QFNPYMIKERLHESSFLFKGLKIVFVD-ENNPELSQTFIAKDGILEYLKYVNENKKSISK 238
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
+I +G + V+ QY D S+ I+SF N+V+T +GGSHE G K A+ + +NDY++K
Sbjct: 239 IIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSKK 298
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
L+ KDK + SD +EGLS VLS+ VPE+ + +EGQTK+KL + + V I++++L
Sbjct: 299 YKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQL 358
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN A L+ + ++A+EAA+KA+++++ K K ++ +L GKLTPAQ KN
Sbjct: 359 FYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSER-VLYGKLTPAQQKNP 417
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+NE++LVEGDSAGG+AK GRD++FQAILPLRGKV+N EK+++ D+LKNEEI +++ +G
Sbjct: 418 LQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLG 477
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+G +FN++++ Y KIIIMTDADTDGAHIQ LLLTFFYRYM+ L+E G VYIAL PLYK
Sbjct: 478 CGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLYK 537
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
+S + K A+AW D +L++LR ++G + QRYKGLGEMN+ QLW TTMDP R LI
Sbjct: 538 IS--AKNSNKSAFAWDDYQLDELRTKYGSYEV-QRYKGLGEMNSEQLWTTTMDPSKRQLI 594
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
+V+I + A+AER+VS+LMGD A+ R+ WI +NV F++EE
Sbjct: 595 QVSIQNAAQAERKVSILMGDDASIRKNWINENVDFSIEE 633
>gb|AAA91333.1| topoisomerase II subunit B
Length = 633
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/639 (51%), Positives = 466/639 (72%), Gaps = 8/639 (1%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
++NYN+ I+VL+GL+ VRKRPGMYIGSTD GLHHL+WE+ DNAVDEAL+G + I+VV
Sbjct: 2 VSNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVV 61
Query: 69 INKDGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127
KDGS+ V D+GRG+P G++ A + TV ++T+LHAGGKF YK SGGLHGVG+SV
Sbjct: 62 HKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121
Query: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187
VNALS L V + RDG +Y +++GGK + LKK+G++ +K GT++ F PD IF I
Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKMGSS--TKHGTIIQFWPDPTIFKNI 179
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
F I ERL ES+FL K +K+ D + + + F ++G+ ++++Y+NE+K+T++
Sbjct: 180 QFNPYMIKERLHESSFLFKGLKIVFVD-ENNPELSQTFIAKDGILEYLKYVNENKKTISK 238
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
+I +G + V+ QY D S+ I+SF N+V+T +GGSHE G K A+ + +NDY++K
Sbjct: 239 IIPFKGDYEKIVVDGCFQYTDNESELIISFANSVKTSEGGSHENGFKQAMLETINDYSKK 298
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
L+ KDK + SD +EGLS VLS+ VPE+ + +EGQTK+KL + + V I++++L
Sbjct: 299 YKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQQL 358
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
+FL EN A L+ + ++A+EAA+KA+++++ K K ++ +L GKLTPAQ KN
Sbjct: 359 FYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSER-VLYGKLTPAQQKNP 417
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+NE++LVEGDSAGG+AK GRD++FQAILPLRGKV+N EK+++ D+LKNEEI +++ +G
Sbjct: 418 LQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCLG 477
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+G +FN++++ Y KIIIMTDADTDGAHIQ LLLTFFYRYM+ L+E G VYIAL PLYK
Sbjct: 478 CGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLYK 537
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLI 607
++ + K A+AW D +L++LR ++G + QRYKGLGEMN+ QLW TTMDP R LI
Sbjct: 538 IT--AKNSNKSAFAWDDYQLDELRTKYGSYEV-QRYKGLGEMNSEQLWTTTMDPSKRQLI 594
Query: 608 RVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646
+V+I + A+AER+VS+LMGD A+ R+ WI +NV F++EE
Sbjct: 595 QVSIQNAAQAERKVSILMGDDASIRKNWINENVDFSIEE 633
>ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT]
gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT]
Length = 637
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/635 (55%), Positives = 467/635 (73%), Gaps = 16/635 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y++ IQVLEGL+AVRKRPGMYIG+T GLHHL++EIVDN++DEAL+GF +I+V+I+K
Sbjct: 7 YDESQIQVLEGLEAVRKRPGMYIGTTGIRGLHHLVYEIVDNSIDEALAGFCQNIEVLIHK 66
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D ++V D GRGMP G H M PTV+VI T+LHAGGKFG GGYK SGGLHGVG+SVVNA
Sbjct: 67 DNCITVKDDGRGMPVGIHPKMKKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS VE+ RDG ++ Q ++ G K V+ L VG + GT V F PDD+IF ++F
Sbjct: 127 LSKECNVEVRRDGHIWSQNYKKG-KVVSELTIVGDT--DEHGTSVYFKPDDEIFEEVEFD 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++T+++RL+E AFL K +K+ L D R + +EFHYE G++ FV +LN +K+TL I
Sbjct: 184 YSTLAQRLRELAFLNKGIKIILVDEREGNERRDEFHYEGGIKSFVSFLNRNKQTLHAEPI 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y+EG D+ VEV LQYND +++NI SF NN+ T +GG+H G K+A+T+ +NDYAR+
Sbjct: 244 YVEGNKDDYLVEVGLQYNDTYNENIFSFANNIDTVEGGTHLAGFKTALTRVLNDYARRYG 303
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LKE DKNL G D REGL+AV+S+ + + QFEGQTK KLG+ R IV+SIVSE+++
Sbjct: 304 FLKENDKNLSGDDTREGLTAVISVKLTDP--QFEGQTKTKLGNTEVRGIVDSIVSERVSI 361
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN + A ++ K++ A AREAA+KAR+ +R +K+ + L GKL SK+ +
Sbjct: 362 FLEENPDTAKIVIEKSLTAARAREAAKKARELTR--RKSVLESTSLPGKLADCSSKDPSE 419
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+YLVEGDSAGGSAKQGRDR+FQAILPLRGK++N EK ++ IL +++I M+ GAG
Sbjct: 420 CEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSDQIRAMITAFGAG 479
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF++E I Y +IIIMTDAD DGAHI TLLLTFFYRYMR LV+ GHVYIA PPLY++
Sbjct: 480 IGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVDGGHVYIAQPPLYQVK 539
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRTL 606
KGK + YA++D EL+++ + G K +QRYKGLGEM+A QLW+TTM+PE RTL
Sbjct: 540 KGKS----VNYAYSDNELQEVLAQIGGKDKNTEIQRYKGLGEMDAGQLWDTTMNPEHRTL 595
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
++VTIDD RA+ ++LMGDK PRR++IE+N K
Sbjct: 596 VKVTIDDAMRADEVFTILMGDKVEPRREFIEENAK 630
>ref|YP_565157.1| DNA gyrase, B subunit [Methanococcoides burtonii DSM 6242]
gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
Length = 632
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/636 (51%), Positives = 452/636 (71%), Gaps = 17/636 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
++Y+ IQVLEGL+AVRKRP MYIGS D GLHHL++E+VDN++DEAL+GF +I V I
Sbjct: 3 DDYDATHIQVLEGLEAVRKRPSMYIGSVDTRGLHHLVYEVVDNSIDEALAGFCKNIDVSI 62
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
N DGSV+V D GRG+P H ++V+ T+LHAGGKF + YK SGGLHGVG SVV
Sbjct: 63 NADGSVTVVDDGRGIPVDNHPKYKKSALEVVLTVLHAGGKFDKSNYKVSGGLHGVGVSVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS W+EVE+ RDG +Y QR+E G P + + +G A +GT TFMPD +IF T +
Sbjct: 123 NALSEWMEVEVKRDGKLYYQRYERGA-PTSDVTVIGDA--KGTGTKSTFMPDSQIFETTE 179
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL--T 246
F + T+ RL+E AFL K +++++TD R ++ + F YE G+ FVE+LN+ + L T
Sbjct: 180 FSYGTLITRLRELAFLNKGIRITITDSREEELEQDVFEYEGGIISFVEHLNQSRTALHKT 239
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
P IY E + + VE+A+QY D + + + SF NN+ T +GG+H G K+A+T+ NDY +
Sbjct: 240 P-IYFEREKEGTIVEIAMQYTDSYGEYVYSFANNINTYEGGTHLIGFKTALTRVANDYIK 298
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K N++K D+ L G D REGL+A++S+ + E QFEGQTK KLG+ + IV+S+VSE
Sbjct: 299 KNNVVK-GDEKLTGEDIREGLAAIISVKLTEP--QFEGQTKTKLGNSELKGIVDSMVSEG 355
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L+ ++ EN +VA + +KA+ AR AREAA+KAR+ +R +K+ + G L GKL K+
Sbjct: 356 LSEYMEENPKVAVIIFQKALDARRAREAAKKARELTR--RKSALEIGTLPGKLADCSEKD 413
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
+E+YLVEGDSAGGSAKQGR+R+FQAILP RGK++N EKA+++ +LKN E+ +++ +
Sbjct: 414 PSVSEVYLVEGDSAGGSAKQGRNRRFQAILPFRGKIINVEKARLSKVLKNNEVLSLITAM 473
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+ D+N+E Y K+IIMTDAD DGAHI+TL+LTFF+RYM PL++AG+VYIA PPLY
Sbjct: 474 GTGIAEDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQPPLY 533
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPETRT 605
++ KGK + Y ++D EL E G+ +QRYKGLGEMN QLWETTM+P+TRT
Sbjct: 534 RIKKGKAE----HYVYSDRELAAKLEEIGENNTYVQRYKGLGEMNPEQLWETTMNPDTRT 589
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
L++VT+DD A A+ SVLMGD+ APR+ +I+ K
Sbjct: 590 LLQVTMDDAAAADEMFSVLMGDEVAPRKAFIQKYAK 625
>ref|ZP_02438913.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1]
gb|EDS21987.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1]
Length = 640
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/637 (56%), Positives = 460/637 (72%), Gaps = 17/637 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y D IQ+LEGL+AVRKRPGMYIGST GLHHL++EIVDNAVDE+L+GF D I V +NK
Sbjct: 9 YGADQIQILEGLEAVRKRPGMYIGSTSEKGLHHLVYEIVDNAVDESLAGFCDTIIVTLNK 68
Query: 72 DGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
DGSV+V D+GRG+P G G+ +V+V+FTILHAGGKFG GGYK SGGLHGVGSSVVNA
Sbjct: 69 DGSVTVEDNGRGIPVGINKKKGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGVGSSVVNA 128
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLEV + ++G +++QR+E G K LK +G K+GT VTF PD IF TIDF
Sbjct: 129 LSDWLEVTVCKEGHIHKQRYERG-KVCYPLKVLGDT--DKTGTTVTFYPDATIFETIDFD 185
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP-VI 249
+NT+ RL+E+AFL KN+K+ LTD RG++ + E FHYE G+++FV YLN+ KE L P VI
Sbjct: 186 YNTLKRRLRETAFLTKNLKIVLTDDRGEEQVSETFHYEGGIKEFVTYLNKGKEALYPDVI 245
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y EG+ VEVA Q+ND +++ LSFVNN+ T +GG+H +G K A+T NDYARK N
Sbjct: 246 YCEGEKDGVYVEVAFQHNDSYNETSLSFVNNIITPEGGTHLSGFKMALTSTFNDYARKNN 305
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLKEK+ NL G D REGL++V+SI + E QFEGQTK KLG+ AR V SI+SE+L +
Sbjct: 306 LLKEKEDNLSGEDIREGLTSVISIKIGEP--QFEGQTKQKLGNSEARGAVNSILSEQLKY 363
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL +N +VA + KA+ A+ AR+AARKARD +R +K D L GKL KN +
Sbjct: 364 FLEQNPQVAKIICEKAVLAQRARDAARKARDLTR--RKTALDGMSLPGKLADCSDKNPEN 421
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+Y+VEGDSAGGSAK R R QAILPLRGK+LN EKA++ +L N+EI M+ G G
Sbjct: 422 CEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVLVNKEIQAMITAFGTG 481
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+ DF++E + Y KIIIMTDAD DGAHI TLLLTF YR+M L++ G+VY+A PPLY++
Sbjct: 482 IHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVYLAQPPLYRVE 541
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGK--GAILQRYKGLGEMNANQLWETTMDPETRTLI 607
K K K YA++D EL ++ +E G+ +QRYKGLGEM+A QLW+TTMDPE R L+
Sbjct: 542 KNK----KFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEKRILL 597
Query: 608 RVTIDDLARAE--RRVSVLMGDKAAPRRQWIEDNVKF 642
RV +D+ + +E + LMGD+ PRR++IE N K+
Sbjct: 598 RVNLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKY 634
>ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfringens ATCC 13124]
ref|ZP_02633736.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
ref|ZP_02640897.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
ref|ZP_02637634.2| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
ref|ZP_02643926.2| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
ref|ZP_02954782.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
gb|ABG83071.1| DNA gyrase, B subunit [Clostridium perfringens ATCC 13124]
gb|EDT13600.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
gb|EDT22246.1| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
gb|EDT25514.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
gb|EDT70222.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
gb|EDT77171.1| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
Length = 638
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/636 (56%), Positives = 462/636 (72%), Gaps = 17/636 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY+ IQVLEGL+AVRKRPGMYIGST + GLHHL++EIVDN++DEAL+G+ +IKV I+
Sbjct: 8 NYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNIKVYIH 67
Query: 71 KDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KD SV+V D GRGMP G H MG PTV+VI T+LHAGGKFG GGYK SGGLHGVG+SVVN
Sbjct: 68 KDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 127
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS EV +TRDG V++Q ++ G +T L+K+G A SGT V F PD +IF ++
Sbjct: 128 ALSELCEVIVTRDGYVWKQSYKRGA-VLTGLEKIGEA--EGSGTKVHFKPDHEIFEETEY 184
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-PV 248
F +S+RL+E AFL K + ++L D R D+ E +HYE G++ FV YLN +KE L
Sbjct: 185 DFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEP 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY+EG VEV+LQY+DGF++NI +F NN+ T +GG+H G K+A+T+ MNDY R+
Sbjct: 245 IYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRF 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LKE DKNL G D REGL+AV+S+ + E QFEGQTK KLG+ R V+SI E ++
Sbjct: 305 GHLKESDKNLSGDDIREGLTAVVSVKISEP--QFEGQTKTKLGNSEVRSAVDSISGEGIS 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
FL EN EV ++ KA+ A AREAAR+AR+ +R K+ ++ L GKL SK+ K
Sbjct: 363 TFLEENPEVGKIIIEKALLASRAREAARRARELTR---KSVLERSSLPGKLADCSSKDPK 419
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+ E+Y+VEGDSAGGSAKQGRDRKFQAILPLRGK++N EK ++ IL ++ I +MV IGA
Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+G +F++E I Y++IIIMTDAD DGAHI+TLLLTFFYRYMR LVE GHVYIA PPLYK+
Sbjct: 480 GIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKI 539
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRT 605
SKGK + YA++D +++ EFG +QRYKGLGEMNA QLWETTMDPE+R
Sbjct: 540 SKGKQER----YAYSDAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRI 595
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
L+R I+D A+ ++LMGDK PRR++I+ N K
Sbjct: 596 LLRADIEDAMVADEIFTILMGDKVEPRREFIQKNAK 631
>ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101]
gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101]
Length = 638
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/636 (56%), Positives = 462/636 (72%), Gaps = 17/636 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY+ IQVLEGL+AVRKRPGMYIGST + GLHHL++EIVDN++DEAL+G+ +IKV I+
Sbjct: 8 NYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNIKVYIH 67
Query: 71 KDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KD S++V D GRGMP G H MG PTV+VI T+LHAGGKFG GGYK SGGLHGVG+SVVN
Sbjct: 68 KDNSITVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 127
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS EV +TRDG V++Q ++ G +T L+K+G A SGT V F PD +IF ++
Sbjct: 128 ALSELCEVIVTRDGYVWKQSYKRGA-VLTGLEKIGEA--EGSGTKVHFKPDHEIFEETEY 184
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-PV 248
F +S+RL+E AFL K + ++L D R D+ E +HYE G++ FV YLN +KE L
Sbjct: 185 DFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEP 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY+EG VEV+LQY+DGF++NI +F NN+ T +GG+H G K+A+T+ MNDY R+
Sbjct: 245 IYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRF 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LKE DKNL G D REGL+AV+S+ + E QFEGQTK KLG+ R V+SI E ++
Sbjct: 305 GHLKESDKNLSGDDIREGLTAVVSVKISEP--QFEGQTKTKLGNSEVRSAVDSISGEGIS 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
FL EN EV ++ KA+ A AREAAR+AR+ +R K+ ++ L GKL SK+ K
Sbjct: 363 TFLEENPEVGKIIIEKALLASRAREAARRARELTR---KSVLERSSLPGKLADCSSKDPK 419
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+ E+Y+VEGDSAGGSAKQGRDRKFQAILPLRGK++N EK ++ IL ++ I +MV IGA
Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+G +F++E I Y++IIIMTDAD DGAHI+TLLLTFFYRYMR LVE GHVYIA PPLYK+
Sbjct: 480 GIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKI 539
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRT 605
SKGK + YA++D +++ EFG +QRYKGLGEMNA QLWETTMDPE+R
Sbjct: 540 SKGKQER----YAYSDAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRI 595
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
L+R I+D A+ ++LMGDK PRR++I+ N K
Sbjct: 596 LLRADIEDAMVADEIFTILMGDKVEPRREFIQKNAK 631
>ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
gb|EDS80520.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
Length = 637
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/636 (56%), Positives = 462/636 (72%), Gaps = 17/636 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY+ IQVLEGL+AVRKRPGMYIGST + GLHHL++EIVDN++DEAL+G+ +IKV I+
Sbjct: 7 NYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNIKVYIH 66
Query: 71 KDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KD SV+V D GRGMP G H MG PTV+VI T+LHAGGKFG GGYK SGGLHGVG+SVVN
Sbjct: 67 KDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 126
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS EV +TRDG V++Q ++ G +T L+K+G A SGT V F PD +IF ++
Sbjct: 127 ALSELCEVIVTRDGYVWKQSYKRGA-VLTGLEKIGEA--EGSGTKVHFKPDHEIFEETEY 183
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-PV 248
F +S+RL+E AFL K + ++L D R D+ E +HYE G++ FV YLN +KE L
Sbjct: 184 DFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEP 243
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY+EG VEV+LQY+DGF++NI +F NN+ T +GG+H G K+A+T+ MNDY R+
Sbjct: 244 IYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRF 303
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LKE DKNL G D REGL+AV+S+ + E QFEGQTK KLG+ R V+SI E ++
Sbjct: 304 GHLKESDKNLSGDDIREGLTAVVSVKISEP--QFEGQTKTKLGNSEVRSAVDSISGEGIS 361
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
FL EN EV ++ KA+ A AREAAR+AR+ +R K+ ++ L GKL SK+ K
Sbjct: 362 TFLEENPEVGKIIIEKALLASRAREAARRARELTR---KSVLERSSLPGKLADCSSKDPK 418
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+ E+Y+VEGDSAGGSAKQGRDRKFQAILPLRGK++N EK ++ IL ++ I +MV IGA
Sbjct: 419 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 478
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+G +F++E I Y++IIIMTDAD DGAHI+TLLLTFFYRYMR LVE GHVYIA PPLYK+
Sbjct: 479 GIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKI 538
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRT 605
SKGK + YA++D +++ EFG +QRYKGLGEMNA QLWETTMDPE+R
Sbjct: 539 SKGKQER----YAYSDAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRI 594
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
L+R I+D A+ ++LMGDK PRR++I+ N K
Sbjct: 595 LLRADIEDAMVADEIFTILMGDKVEPRREFIQKNAK 630
>ref|YP_001111383.1| DNA gyrase, B subunit [Desulfotomaculum reducens MI-1]
gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
Length = 638
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/638 (54%), Positives = 468/638 (73%), Gaps = 16/638 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y+ D IQVLEGL+AVR+RPGMYIGST A GLHHL++E+VDN++DEAL+G+ D I V I
Sbjct: 8 NKYSADQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGYCDKIIVTI 67
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S++V D+GRG+P H +G P V+V+ T+LHAGGKFG GGYK SGGLHGVG SVV
Sbjct: 68 QEDNSITVEDNGRGIPVDLHPKVGRPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSVV 127
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS +L VEI R+G +Y+Q + G P T L+ VG + +GT VTF PD++IF +
Sbjct: 128 NALSKYLSVEIKRNGKIYKQEYSRG-IPTTELQIVGNS--KTTGTKVTFKPDEEIFEELV 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEE-FHYENGVQDFVEYLNEDKETL-T 246
F T+S+R++E A+L K +K+ L D R DP+ E+ F Y+ G++DFV++LN +K+T+ T
Sbjct: 185 FSLETLSQRIRELAYLNKGIKIILQDKR-KDPVAEQIFQYDGGIKDFVKHLNRNKQTIHT 243
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
IY+ G+ + VEVA+QYNDG+++N+LS+ NN+ T DGG+HE GLK+A+T+ +NDY R
Sbjct: 244 KPIYVSGEKEQIVVEVAIQYNDGYTENMLSYANNIHTVDGGTHEVGLKTALTRVINDYGR 303
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
+ +LK D NL G D REG + V+S+ VPE QFEGQTK KLG+ R IV+SI +EK
Sbjct: 304 QHGVLKNNDANLSGEDIREGATIVISVKVPEP--QFEGQTKTKLGNSEVRGIVDSIFAEK 361
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L+ +L+EN VA ++ K I A AREAARKAR+ +R +K+ + L GKL K+
Sbjct: 362 LSTYLVENPSVAKKIIEKGITAARAREAARKARELTR--RKSALETMSLPGKLADCSEKD 419
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
+E+YLVEGDSAGGSAKQGR+R+FQAILPL+GK+LN EKA+M IL NEEI M+ +
Sbjct: 420 PSVSEIYLVEGDSAGGSAKQGRERRFQAILPLKGKILNVEKARMDKILANEEIRAMITAM 479
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+G DF++ Y KI+IMTDAD DGAHI+TLL+TFFYRYMR L+EAG+V++A PPLY
Sbjct: 480 GTGIGEDFDIAKARYHKIVIMTDADVDGAHIRTLLMTFFYRYMRQLIEAGYVFVAQPPLY 539
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWETTMDPETRT 605
++ KGK + Y ++D ELE+L G + +QRYKGLGEMN QLWETTMDP+TRT
Sbjct: 540 RVRKGKHDS----YCYSDNELEELLNRIGHDRVNIQRYKGLGEMNPEQLWETTMDPDTRT 595
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
+++VT++D A+ S+LMGD+ PRR +I++N K+
Sbjct: 596 MLQVTLEDAIEADATFSMLMGDRVEPRRDFIQENAKYV 633
>ref|YP_306285.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
barkeri str. Fusaro]
gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
Length = 633
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/632 (53%), Positives = 446/632 (70%), Gaps = 14/632 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ IQVLEGL+AVRKRP MYIGSTD+ GLHHL++E+VDN++DEAL+GF I V IN
Sbjct: 7 YDASHIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTIINVTINP 66
Query: 72 DGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
DGSV+V D+GRG+P H + ++V+ T+LHAGGKF + YK SGGLHGVG SVVN
Sbjct: 67 DGSVTVLDNGRGIPVDPHPFHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVNG 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLEVE+ R+G Y QR++ G KP + ++GT+ +GT TF PD+KIF T+DF
Sbjct: 127 LSEWLEVEVAREGKKYFQRYDRG-KPKADVLEIGTS--ETTGTKTTFKPDEKIFETLDFD 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY 250
+ +S RL+E AFL + + +SL DLR D E F YE G+ +FV+YLN K+ L IY
Sbjct: 184 YEILSNRLRELAFLNRGLTISLMDLRTPDGQAETFTYEGGIVEFVKYLNNKKQPLHAPIY 243
Query: 251 MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNL 310
E Q D VE+A+QY +++N+ SF NN+ T +GG+H G K+A+T+ NDY K N
Sbjct: 244 FERQRDDMVVEIAMQYTSSYAENVYSFANNINTHEGGTHIIGFKTALTRVANDYI-KANK 302
Query: 311 LKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFF 370
L ++D L G D REGL+A++S+ + E QFEGQTK +LG+ + IV+S+V++ L +
Sbjct: 303 LSKEDIKLTGDDVREGLTAIISVKLMEP--QFEGQTKTRLGNSDVKGIVDSLVTDGLAEY 360
Query: 371 LLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKN 430
EN +VA+ ++ KA+ A+ AREAA+KAR+ +R +KN + L GKL KN
Sbjct: 361 FEENPKVANVILEKALLAQKAREAAKKARELTR--RKNALEVSTLPGKLADCSEKNPAAC 418
Query: 431 ELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGV 490
E+Y+VEG+SAGGSAKQGRDR FQAILPLRGK+LN EK+++A ILKNEEI +++ IG G+
Sbjct: 419 EIYIVEGNSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITAIGTGI 478
Query: 491 GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 550
DF LE Y K+IIMTDAD DG HI+TLLLT F+RYMRPL++ G+VYIA PPLY++ K
Sbjct: 479 SEDFTLESARYHKVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPPLYRIKK 538
Query: 551 GKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTMDPETRTLIRV 609
GK + Y +D ELE ++E G KG +QRYKGLGEMN QLWETTM+PE+R L++V
Sbjct: 539 GKAEY----YIHSDRELEAKKKELGEKGLGIQRYKGLGEMNPGQLWETTMNPESRILLQV 594
Query: 610 TIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
T++D RA+ VLMGD+ PRR +IE + K
Sbjct: 595 TLEDAIRADEIFRVLMGDEVEPRRNFIEAHAK 626
>ref|ZP_01695482.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
gb|EAY45342.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
Length = 641
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/647 (54%), Positives = 467/647 (72%), Gaps = 18/647 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ ++++ +Y + IQVLEGL+AVRKRPGMYIGST A GLHHL+WEIVDN++DEAL+GF
Sbjct: 1 MEQEQLQKQSYGAEQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSIDEALAGF 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I KD S++V D+GRG+P G Q +G P V+VI TILHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVFIEKDNSITVKDNGRGIPVGIQEKVGRPAVEVIMTILHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS L+V + RDG +Y Q++ G KP LK +G ++GT F PD
Sbjct: 121 HGVGASVVNALSTELDVYVHRDGHIYYQKYRRG-KPAFDLKIIGET--DRTGTTTHFKPD 177
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF+ T +F F+ ++ RL+E AFL K +K+++ D R +P +E+HYE G++ +VE+LN
Sbjct: 178 PEIFTETTEFDFDILTTRLRELAFLNKGIKITIEDKREKNPRKQEYHYEGGIKSYVEHLN 237
Query: 240 EDKETL-TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
KE L IY+EG+ VEV+LQYNDGF+ NI SF NN+ T +GG+HE+G K+A+T
Sbjct: 238 RSKEVLHKEPIYVEGEKDGITVEVSLQYNDGFASNIYSFANNIHTYEGGTHESGFKTALT 297
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ +NDYARK NL+KE + NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I
Sbjct: 298 RVINDYARKNNLIKENEANLTGEDVREGLTAIVSIKHPDP--QFEGQTKTKLGNTEARTI 355
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
+++ SE F++EN +VA +V K + A AR AA+KAR+ +R +K+ + L GK
Sbjct: 356 TDAVFSETFEKFMMENPQVARKIVEKGLMAARARMAAKKARELTR--RKSALESTSLPGK 413
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
L S++ ++ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA++ IL N E
Sbjct: 414 LADCTSRDPAESELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAE 473
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I T++ +G GVG DF++ Y K++IMTDAD DGAHI+TLLLTFFYRYMRPL++AG++
Sbjct: 474 IRTIITALGTGVGEDFDISKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYI 533
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREF---GKGAILQRYKGLGEMNANQLW 595
YIA PPLYK+ +GK ++ Y ++D LE+L K AI QRYKGLGEMN QLW
Sbjct: 534 YIAQPPLYKVQQGK----RVEYVYSDRGLEELLNTLPAQPKPAI-QRYKGLGEMNPEQLW 588
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
ETTM+P RT+++V++DD A+ +LMGDK PRR +IE+N +
Sbjct: 589 ETTMEPANRTMLQVSLDDAIEADGTFEMLMGDKVEPRRNFIEENAIY 635
>ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
acetivorans C2A]
gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
acetivorans C2A]
Length = 634
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/633 (52%), Positives = 449/633 (70%), Gaps = 15/633 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+ IQVLEGL+AVRKRP MYIGSTD+ GLHHL++E+VDN++DEAL+GF + V IN
Sbjct: 7 YDASRIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTRVDVTINP 66
Query: 72 DGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
DGSV+V D+GRG+P H + + ++V+ T+LHAGGKF + YK SGGLHGVG SVVNA
Sbjct: 67 DGSVTVLDNGRGIPIDPHPVHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WL VE+ RDG Y QR+ G KP +++ GT+ +GT TF PD +IF T DF+
Sbjct: 127 LSEWLNVEVERDGKKYFQRYIRG-KPEAEVQETGTS--EITGTKTTFKPDARIFETTDFQ 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++ +S RL+E AFL + + ++L DLR + E F Y G+ +FVEYLN+ K+ L I
Sbjct: 184 YDILSNRLRELAFLNRGLTINLKDLRSPEGQAETFIYSGGIVEFVEYLNKKKQPLHEKPI 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y E Q D VE+A+QY + +++N+ SF NN+ T +GG+H G K+A+T+ NDY K N
Sbjct: 244 YFERQRDDMVVEIAMQYTNSYTENVYSFANNINTHEGGTHIIGFKTALTRVANDYI-KAN 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
L ++D L G D REGL+A++S+ + E QFEGQTK +LG+ + IV+S+V++ L
Sbjct: 303 KLSKEDAKLTGDDVREGLTAIISVKLMEP--QFEGQTKTRLGNSEVKGIVDSLVTDGLAE 360
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+ EN +VA+ ++ KA+ A+ AREAA+KAR+ +R +K+ + L GKL K+
Sbjct: 361 YFEENPKVANVILEKALLAQKAREAAKKARELTR--RKSALEVSTLPGKLADCSEKDPSV 418
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+Y+VEG+SAGGSAKQGRDR FQAILPLRGK+LN EK+++A ILKN E+ +++ +G G
Sbjct: 419 CEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITALGTG 478
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
V DF LE Y K+I+MTDAD DGAHI+TLLLT F+RYMRPL++AG+VYIA PPLY++
Sbjct: 479 VSEDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLYRIK 538
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGK + Y +D ELE ++E G KG +QRYKGLGEMN QLWETTM+PE+RTL++
Sbjct: 539 KGKSE----YYIHSDRELEVKKKELGEKGLAIQRYKGLGEMNPEQLWETTMNPESRTLLQ 594
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
VT++D RA+ VLMGD+ PRR +IE + K
Sbjct: 595 VTLEDALRADEIFRVLMGDEVEPRRNFIETHAK 627
>gb|ABI96230.1| DNA topoisomerase IV subunit B [Spiroplasma melliferum]
Length = 554
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/560 (57%), Positives = 425/560 (75%), Gaps = 6/560 (1%)
Query: 35 GSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIP 94
GSTD GLHHL+WEI+DN++DEAL+G+ ++I ++I K+ ++ VAD+GRG+PTG H+ G
Sbjct: 1 GSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIHSSGKS 60
Query: 95 TVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGG 154
T +VIF++LHAGGKFG GYKT+GGLHGVGSSVVNALSA +V I RD V+ +F NGG
Sbjct: 61 TPEVIFSVLHAGGKFGGDGYKTAGGLHGVGSSVVNALSATFDVTIYRDHKVWSIKFANGG 120
Query: 155 KPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTD 214
+ L K +K+GT VTF+PD KIF IDF F+TISER++ESAFL VK++LTD
Sbjct: 121 QVKEPLTK--IGTTTKTGTTVTFLPDHKIFKVIDFSFSTISERIRESAFLNSGVKLTLTD 178
Query: 215 LRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNI 274
R D + + + NG+++F+ Y+NEDK+++TP+I ++G ++ +VE+ALQY+ F++N+
Sbjct: 179 QRTDKKV--SYLFNNGLEEFITYMNEDKKSITPIIMLKGVEKQIEVEIALQYSTEFNENL 236
Query: 275 LSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSIL 334
LSF NNV+T +GGSH G ++ +TK +NDYARK LLKEKDKNL+ D REGL+A++S+
Sbjct: 237 LSFANNVKTSEGGSHVVGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSVK 296
Query: 335 VPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREA 394
+PE +Q+EGQTK KLG+ AR VE+IV+++ F+L EN A ++ KA+ AR+ E
Sbjct: 297 IPENLIQYEGQTKGKLGTYEARVAVETIVAKQFGFWLTENKTNAYTIIEKALLARNVCEE 356
Query: 395 ARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQA 454
ARKAR+ +RN KK LL+GKLTPAQ++N NE++LVEGDSAGGSAK GRDR+FQA
Sbjct: 357 ARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQA 416
Query: 455 ILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDG 514
ILPLRGKV+N EKAK+ D++ NEEIN M+ IGAGVG F++ D NY K+IIMTDADTDG
Sbjct: 417 ILPLRGKVINAEKAKLQDLMNNEEINVMINAIGAGVGNGFDINDANYGKVIIMTDADTDG 476
Query: 515 AHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREF 574
AHIQTLLLTFFYRYMRPL+E VY+ALPPL+K++ K K I YAW + EL++ +F
Sbjct: 477 AHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNK--HIEYAWDETELKNKLSQF 534
Query: 575 GKGAILQRYKGLGEMNANQL 594
LQRYKGLGEMNA QL
Sbjct: 535 HGKFELQRYKGLGEMNAEQL 554
>gb|ABF50635.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
gb|ABF50636.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
Length = 554
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/560 (57%), Positives = 425/560 (75%), Gaps = 6/560 (1%)
Query: 35 GSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIP 94
GSTD GLHHL+WEI+DN++DEAL+G+ ++I ++I K+ ++ VAD+GRG+PTG H+ G
Sbjct: 1 GSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIHSSGKS 60
Query: 95 TVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGG 154
T +VIF++LHAGGKFG GYKTSGGLHGVGSSVVNALS+ +V I RD V+ +F NGG
Sbjct: 61 TPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSTFDVTIYRDHKVWSIKFANGG 120
Query: 155 KPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTD 214
+ L K +K+GT VTF+PD KIF IDF F+TISER++ESAFL VK++LTD
Sbjct: 121 QVKEPLTK--IGTTTKTGTTVTFLPDHKIFKVIDFSFSTISERIRESAFLNSGVKLTLTD 178
Query: 215 LRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNI 274
R D + + + NG+++F+ Y+NE K+++TP+I ++G ++ +VE+ALQY+ F++N+
Sbjct: 179 QRTDKKV--SYLFNNGLEEFITYMNEGKKSITPIIMLKGIEKQIEVEIALQYSTEFNENL 236
Query: 275 LSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSIL 334
LSF NNV+T +GGSH G ++ +TK +NDYARK LLKEKDKNL+ D REGL+A++S+
Sbjct: 237 LSFANNVKTSEGGSHVAGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSVK 296
Query: 335 VPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREA 394
+PE +Q+EGQTK KLG+ AR +VE+IVS++ F+L EN A ++ KA+ AR+ RE
Sbjct: 297 IPENLIQYEGQTKGKLGTYEARLVVETIVSKQFGFWLTENKANAYTIIEKALLARNVREE 356
Query: 395 ARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQA 454
ARKAR+ +RN KK LL+GKLTPAQ++N NE++LVEGDSAGGSAK GRDR+FQA
Sbjct: 357 ARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQA 416
Query: 455 ILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDG 514
ILPLRGKV+N EKAK+ D++ NEEIN M+ IG GVG F++ D NY K+IIMTDADTDG
Sbjct: 417 ILPLRGKVINAEKAKIQDLMNNEEINVMINAIGTGVGNGFDINDANYGKVIIMTDADTDG 476
Query: 515 AHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREF 574
AHIQTLLLTFFYRYMRPL+E VY+ALPPL+K++ K K I YAW + EL++ +F
Sbjct: 477 AHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNK--HIEYAWDETELKNKLSQF 534
Query: 575 GKGAILQRYKGLGEMNANQL 594
LQRYKGLGEMNA QL
Sbjct: 535 HGKFELQRYKGLGEMNAEQL 554
>ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
Length = 637
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/635 (56%), Positives = 465/635 (73%), Gaps = 17/635 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+++ IQVLEGL+AVRKRPGMYIGST + GLHHL++EIVDN++DEAL+G+ I+V INK
Sbjct: 8 YDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKKIEVNINK 67
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRGMP G H MG TV+VI TILHAGGKFG GGYK SGGLHGVG+SVVNA
Sbjct: 68 DNSITVIDDGRGMPVGIHPKMGKSTVEVIMTILHAGGKFGGGGYKVSGGLHGVGASVVNA 127
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS V + R+G++++Q + G K +T ++K+G + S+SGT V F PD +IF + F
Sbjct: 128 LSEECRVTVKREGAIWQQEYSKG-KVLTDVEKIGES--SESGTQVYFKPDAEIFDEVIFD 184
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
F +++RL+E AFL K + + L DLR ++ E FHYE G++ FV YLN +K L I
Sbjct: 185 FEILAQRLRELAFLNKGIYIKLVDLREENEKEEVFHYEGGIKSFVSYLNRNKVALHEEPI 244
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y+EG + VEVALQYNDG+++NI SF NN+ T +GG+H G K+A+T+A NDYA+K
Sbjct: 245 YIEGIKDNVSVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRAFNDYAKKFG 304
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
+KE DKN G D REGL+AV+S+ + E QFEGQTK KLG+ R IV+SIV E ++
Sbjct: 305 HIKENDKNFTGDDIREGLTAVVSVKIEEP--QFEGQTKTKLGNSEVRGIVDSIVGECIST 362
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN V +V KA+ A AR+AARKAR+ +R K+ ++ L GKL SK+ K+
Sbjct: 363 FLEENPSVGKMIVDKALMAARARDAARKARELTR---KSVLERSTLPGKLADCSSKDPKE 419
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+Y+VEGDSAGGSAKQGR+RKFQAILPLRGK+LN EK ++ IL + I +MV GAG
Sbjct: 420 CEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAFGAG 479
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF++E I YD+IIIMTDAD DGAHI+TLLLTFFYRYMRPL++ GHVYIA PPLYK+S
Sbjct: 480 IGNDFDIEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDEGHVYIAQPPLYKIS 539
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRTL 606
KGK K YA++D ELE + +FG +QRYKGLGEMNA+QLW+TTMDPE R L
Sbjct: 540 KGK----KEHYAYSDAELEQVLIDFGGKDNSTDIQRYKGLGEMNASQLWDTTMDPEQRIL 595
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
+RV ++D +A+ ++LMG+K PR+++I+ N K
Sbjct: 596 LRVNVEDAMQADEIFTILMGEKVEPRKEFIQQNAK 630
>ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
dbj|BAB79712.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
Length = 638
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/636 (56%), Positives = 462/636 (72%), Gaps = 17/636 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY+ IQVLEGL+AVRKRPGMYIGST + GLHHL++EIVDN++DEAL+G+ +IKV I+
Sbjct: 8 NYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNIKVYIH 67
Query: 71 KDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KD SV+V D GRGMP G H MG PTV+VI T+LHAGGKFG GGYK SGGLHGVG+SVVN
Sbjct: 68 KDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 127
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDF 189
ALS EV +TRDG V++Q ++ G +T L+++G A SGT V F PD +IF ++
Sbjct: 128 ALSELCEVIVTRDGYVWKQSYKRGA-VLTGLERIGEA--EGSGTKVHFKPDHEIFEETEY 184
Query: 190 KFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-PV 248
F +S+RL+E AFL K + ++L D R D+ E +HYE G++ FV YLN +KE L
Sbjct: 185 DFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVLHDEP 244
Query: 249 IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKT 308
IY+EG VEV+LQY+DGF++NI +F NN+ T +GG+H G K+A+T+ MNDY R+
Sbjct: 245 IYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDYGRRF 304
Query: 309 NLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLT 368
LKE DKNL G D REGL+AV+S+ + + QFEGQTK KLG+ R V+SI E ++
Sbjct: 305 GHLKESDKNLSGDDIREGLTAVVSVKISDP--QFEGQTKTKLGNSEVRSAVDSISGEGIS 362
Query: 369 FFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAK 428
FL EN EV ++ KA+ A AREAAR+AR+ +R K+ ++ L GKL SK+ K
Sbjct: 363 TFLEENPEVGKIIIEKALLASRAREAARRARELTR---KSVLERSSLPGKLADCSSKDPK 419
Query: 429 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGA 488
+ E+Y+VEGDSAGGSAKQGRDRKFQAILPLRGK++N EK ++ IL ++ I +MV IGA
Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479
Query: 489 GVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKM 548
G+G +F++E I Y++IIIMTDAD DGAHI+TLLLTFFYRYMR LVE GHVYIA PPLYK+
Sbjct: 480 GIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYKI 539
Query: 549 SKGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRT 605
SKGK + YA++D +++ EFG +QRYKGLGEMNA QLWETTMDPE+R
Sbjct: 540 SKGKQER----YAYSDAAADEIIEEFGGKDSSVNVQRYKGLGEMNAGQLWETTMDPESRI 595
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
L+R I+D A+ ++LMGDK PRR++I+ N K
Sbjct: 596 LLRADIEDAMVADEIFTILMGDKVEPRREFIQKNAK 631
>gb|ABF50634.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
Length = 554
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/560 (57%), Positives = 425/560 (75%), Gaps = 6/560 (1%)
Query: 35 GSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIP 94
GSTD GLHHL+WEI+DN++DEAL+G+ ++I ++I K+ ++ VAD+GRG+PTG H+ G
Sbjct: 1 GSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIHSSGKS 60
Query: 95 TVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGG 154
T +VIF++LHAGGKFG GYKTSGGLHGVGSSVVNALS+ +V I RD V+ +F NGG
Sbjct: 61 TPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSTFDVTIYRDHKVWSIKFANGG 120
Query: 155 KPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTD 214
+ L K +K+GT VTF+PD KIF IDF F+TISER++ESAFL VK++LTD
Sbjct: 121 QVKEPLTK--IGTTTKTGTTVTFLPDHKIFKVIDFSFSTISERIRESAFLNSGVKLTLTD 178
Query: 215 LRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNI 274
R D + + + NG+++F+ Y+NE K+++TP+I ++G ++ +VE+ALQY+ F++N+
Sbjct: 179 QRTDKKV--SYLFNNGLEEFITYMNEGKKSITPIIMLKGIEKQIEVEIALQYSTEFNENL 236
Query: 275 LSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSIL 334
LSF NNV+T +GGSH G ++ +TK +NDYARK LLKEKDKNL+ D REGL+A++S+
Sbjct: 237 LSFANNVKTSEGGSHVAGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSVK 296
Query: 335 VPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREA 394
+PE +Q+EGQTK KLG+ AR +VE+IV+++ F+L EN A ++ KA+ AR+ RE
Sbjct: 297 IPENLIQYEGQTKGKLGTYEARLVVETIVAKQFGFWLTENKANAYTIIEKALLARNVREE 356
Query: 395 ARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQA 454
ARKAR+ +RN KK LL+GKLTPAQ++N NE++LVEGDSAGGSAK GRDR+FQA
Sbjct: 357 ARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQA 416
Query: 455 ILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDG 514
ILPLRGKV+N EKAK+ D++ NEEIN M+ IG GVG F++ D NY K+IIMTDADTDG
Sbjct: 417 ILPLRGKVINAEKAKIQDLMNNEEINVMINAIGTGVGNGFDINDANYGKVIIMTDADTDG 476
Query: 515 AHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREF 574
AHIQTLLLTFFYRYMRPL+E VY+ALPPL+K++ K K I YAW + EL++ +F
Sbjct: 477 AHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNK--HIEYAWDETELKNKLSQF 534
Query: 575 GKGAILQRYKGLGEMNANQL 594
LQRYKGLGEMNA QL
Sbjct: 535 HGKFELQRYKGLGEMNAEQL 554
>ref|YP_699349.1| DNA topoisomerase IV subunit B [Clostridium perfringens SM101]
gb|ABG85821.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens SM101]
Length = 648
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/651 (49%), Positives = 463/651 (71%), Gaps = 26/651 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+ ++ LE L+ VR RPGMYIGST + GLHH IWEI+DN++DE +G+G+ KV++
Sbjct: 6 NNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKAKVIL 65
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
NKD SV+V D+GRG+PTG H + T V+++FT LH GGKF YKTSGGLHGVG++VV
Sbjct: 66 NKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGVGAAVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENG----------GKPVTTLKKVGTAPKSKSGTVVTFM 178
NALS WLEVE+ ++G +YRQRFE G PVT L+ VG + ++GT VTF+
Sbjct: 126 NALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGES--KETGTKVTFL 183
Query: 179 PDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYL 238
PD ++FST DFKF+ I ERL+E AF K +++ L D R ++ + +E++ E G+ DF++YL
Sbjct: 184 PDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGLLDFIDYL 243
Query: 239 NEDKETL--TPVIYMEGQDQ--DFQV--EVALQYNDGFSDNILSFVNNVRTKDGGSHETG 292
NE K L TPV++ EG+ + + Q+ E+ LQ+ D ++NI+S+VNN+ T + G+HETG
Sbjct: 244 NESKTPLHPTPVLF-EGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEAGTHETG 302
Query: 293 LKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGS 352
K+ +T+A ++A+K NL+KEKDK EG D REG++A++ I + + FEGQTK KLG+
Sbjct: 303 FKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKI--TNPVFEGQTKTKLGN 360
Query: 353 PLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDK 412
A ++ + K ++ +N EVA+ ++ A++A RE +K D R KK K
Sbjct: 361 NEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALEAAARREKIKKINDAER--KKIGKGT 418
Query: 413 GLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMAD 472
L+GK+ KN + NE +VEGDSAGGSAKQ RDR+FQ I+P +GK++NTEK K+ +
Sbjct: 419 APLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 478
Query: 473 ILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPL 532
++ +EE+ IG G+ ++N ED+ YDKIIIM+DAD DG HI+TL +T+ YRYMRPL
Sbjct: 479 VIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPL 538
Query: 533 VEAGHVYIALPPLYKMSK-GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNA 591
+ GH+Y+A PPLYK++K GKGK +KI YA++D ELE+++++ GKGA +QR+KGLGEMN
Sbjct: 539 IANGHLYLAQPPLYKVAKSGKGK-DKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNP 597
Query: 592 NQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+QLWETT++PETRTL++VTI+D A+AE+ VS+LMGD PR+ ++ +F
Sbjct: 598 DQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYAEF 648
>ref|ZP_02587033.1| DNA gyrase subunit B [Bacillus cereus G9842]
Length = 640
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/648 (53%), Positives = 464/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPD 177
Query: 181 DKIF-STIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T +++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 178 PEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLW
Sbjct: 532 IYIAQPPLFKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635
>ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 645
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/648 (53%), Positives = 464/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 6 MEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 65
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 66 CDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 125
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD
Sbjct: 126 HGVGASVVNALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPD 182
Query: 181 DKIF-STIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T +++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 183 PEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 241
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+
Sbjct: 242 RSKQPIHEEPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 300
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR
Sbjct: 301 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEART 358
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 359 ITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTR--RKSALEVSSLPG 416
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 417 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 476
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 477 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 536
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLW
Sbjct: 537 IYIAQPPLFKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 592
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 593 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 640
>gb|AAD00550.1| topoisomerase II ParE [Mycoplasma arthritidis]
Length = 614
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/616 (53%), Positives = 431/616 (69%), Gaps = 8/616 (1%)
Query: 32 MYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAM 91
MYIGSTD TGLHHL+WEIVDNA+DEAL+GF DIKV + KD SV V D+GRG+P +H
Sbjct: 1 MYIGSTDITGLHHLVWEIVDNALDEALAGFATDIKVTLKKDDSVIVEDNGRGIPVSKHGS 60
Query: 92 GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRFE 151
G V+++FT LHAGGKF +G YKTSGGLHGVGSSVVNALS L V++ RD Y+ FE
Sbjct: 61 GKTGVELVFTELHAGGKFDEGVYKTSGGLHGVGSSVVNALSEKLIVKVYRDKKEYKTVFE 120
Query: 152 NGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKESAFLLKNVKMS 211
K + VG P +K GT V F PD IF F + + E+L+E++FL+ N+K+
Sbjct: 121 QD-KIIEGTNVVG--PTTKHGTKVQFWPDKTIFKKTKFSSDIVKEKLREASFLIPNLKIH 177
Query: 212 LTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFS 271
+ I F G++++++++ E K ++ + Y +G + ++E+AL Y D ++
Sbjct: 178 FNHEESGEAIT--FEAAEGIKEYIKFVGEGKNFISSIFYAKGTFKKIEMEIALVYTDNYT 235
Query: 272 DNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVL 331
+NI SFVNNV+T+DGG+HET KSA+TK +N+YA + NLLK K+ N EG D REG+ AV+
Sbjct: 236 ENIYSFVNNVKTRDGGTHETAFKSALTKTINEYASQHNLLKNKN-NFEGDDVREGIIAVV 294
Query: 332 SILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDA 391
S+ +PE L+F GQTKDKLG+ AR VE SEK F+L EN + ++ K K+ DA
Sbjct: 295 SLKIPESILEFVGQTKDKLGTLEAREAVEDFFSEKFGFYLNENKLDSDKILNKIKKSYDA 354
Query: 392 REAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRK 451
R AAR AR++ R K ++K +LSGKLTPAQ+KN+ EL+LVEGDSAGGSAK GR
Sbjct: 355 RMAARTARNEIRKIKNKLENKKILSGKLTPAQTKNSSLKELFLVEGDSAGGSAKMGRAPN 414
Query: 452 FQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDAD 511
QAILPLRGKV+NT KAK+ DIL NEEI T++ TIGAG+G DFN+++ Y KIIIMTDAD
Sbjct: 415 TQAILPLRGKVINTVKAKLTDILSNEEIATIINTIGAGIGQDFNIKNSQYGKIIIMTDAD 474
Query: 512 TDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLR 571
TDGAHIQ LLLTFFYRYM+ L++AG VYIALPPLYK++ KG K Y W D EL DL
Sbjct: 475 TDGAHIQVLLLTFFYRYMKKLIDAGMVYIALPPLYKLTV-KGAKAKHFYVWDDDELRDLT 533
Query: 572 REFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAP 631
++ I QRYKGLGEMN +QLW+TTM+PETR+++RV I+D ER V+ LM D
Sbjct: 534 SKYSNYEI-QRYKGLGEMNPDQLWDTTMNPETRSILRVRINDEGLTERNVTTLMSDDINA 592
Query: 632 RRQWIEDNVKFTLEEN 647
R+ WI V F+ E++
Sbjct: 593 RKLWINTYVDFSAEDD 608
>ref|YP_696749.1| DNA topoisomerase IV subunit B [Clostridium perfringens ATCC 13124]
ref|ZP_02631882.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens E str. JGS1987]
ref|ZP_02638519.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens CPE str. F4969]
ref|ZP_02641321.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens NCTC 8239]
ref|ZP_02864679.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C
str. JGS1495]
gb|ABG84353.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens ATCC 13124]
gb|EDS80330.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C
str. JGS1495]
gb|EDT15276.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens E str. JGS1987]
gb|EDT27773.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens CPE str. F4969]
gb|EDT79792.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens NCTC 8239]
Length = 648
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/651 (49%), Positives = 462/651 (70%), Gaps = 26/651 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+ ++ LE L+ VR RPGMYIGST + GLHH IWEI+DN++DE +G+G+ KV++
Sbjct: 6 NNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKAKVIL 65
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
NKD SV+V D+GRG+PTG H + T V+++FT LH GGKF YKTSGGLHGVG++VV
Sbjct: 66 NKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGVGAAVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENG----------GKPVTTLKKVGTAPKSKSGTVVTFM 178
NALS WLEVE+ ++G +YRQRFE G PVT L+ VG + ++GT VTF+
Sbjct: 126 NALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGES--KETGTKVTFL 183
Query: 179 PDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYL 238
PD ++FST DFKF+ I ERL+E AF K +++ L D R ++ + +E++ E G+ DF++YL
Sbjct: 184 PDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGLLDFIDYL 243
Query: 239 NEDKETL--TPVIYMEGQDQ--DFQV--EVALQYNDGFSDNILSFVNNVRTKDGGSHETG 292
NE K L TPV++ EG+ + + Q+ E+ LQ+ D ++NI+S+VNN+ T + G+HETG
Sbjct: 244 NESKTPLHPTPVLF-EGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEAGTHETG 302
Query: 293 LKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGS 352
K+ +T+A ++A+K NL+KEKDK EG D REG++A++ I + + FEGQTK KLG+
Sbjct: 303 FKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKI--TNPVFEGQTKTKLGN 360
Query: 353 PLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDK 412
A ++ + K ++ +N EVA+ ++ A+ A RE +K D R KK K
Sbjct: 361 NEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAER--KKIGKGT 418
Query: 413 GLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMAD 472
L+GK+ KN + NE +VEGDSAGGSAKQ RDR+FQ I+P +GK++NTEK K+ +
Sbjct: 419 APLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 478
Query: 473 ILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPL 532
++ +EE+ IG G+ ++N ED+ YDKIIIM+DAD DG HI+TL +T+ YRYMRPL
Sbjct: 479 VIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPL 538
Query: 533 VEAGHVYIALPPLYKMSK-GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNA 591
+ GH+Y+A PPLYK++K GKGK +KI YA++D ELE+++++ GKGA +QR+KGLGEMN
Sbjct: 539 IANGHLYLAQPPLYKVAKSGKGK-DKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNP 597
Query: 592 NQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+QLWETT++PETRTL++VTI+D A+AE+ VS+LMGD PR+ ++ +F
Sbjct: 598 DQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYAEF 648
>ref|ZP_02951777.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens D str. JGS1721]
gb|EDT73236.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens D str. JGS1721]
Length = 648
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/651 (49%), Positives = 462/651 (70%), Gaps = 26/651 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+ ++ LE L+ VR RPGMYIGST + GLHH IWEI+DN++DE +G+G+ KV++
Sbjct: 6 NNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKAKVIL 65
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
NKD SV+V D+GRG+PTG H + T V+++FT LH GGKF YKTSGGLHGVG++VV
Sbjct: 66 NKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGVGAAVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENG----------GKPVTTLKKVGTAPKSKSGTVVTFM 178
NALS WLEVE+ ++G +YRQRFE G PVT L+ VG + ++GT VTF+
Sbjct: 126 NALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGES--KETGTKVTFL 183
Query: 179 PDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYL 238
PD ++FST DFKF+ I ERL+E AF K +++ L D R ++ + +E++ E G+ DF++YL
Sbjct: 184 PDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGLLDFIDYL 243
Query: 239 NEDKETL--TPVIYMEGQDQ--DFQV--EVALQYNDGFSDNILSFVNNVRTKDGGSHETG 292
NE K L TPV++ EG+ + + Q+ E+ LQ+ D ++NI+S+VNN+ T + G+HETG
Sbjct: 244 NESKTPLHPTPVLF-EGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEAGTHETG 302
Query: 293 LKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGS 352
K+ +T+A ++A+K NL+KEKDK EG D REG++A++ I + + FEGQTK KLG+
Sbjct: 303 FKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKI--TNPVFEGQTKTKLGN 360
Query: 353 PLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDK 412
A ++ + K ++ +N EVA+ ++ A+ A RE +K D R KK K
Sbjct: 361 NEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAER--KKIGKGT 418
Query: 413 GLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMAD 472
L+GK+ KN + NE +VEGDSAGGSAKQ RDR+FQ I+P +GK++NTEK K+ +
Sbjct: 419 APLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 478
Query: 473 ILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPL 532
++ +EE+ IG G+ ++N ED+ YDKIIIM+DAD DG HI+TL +T+ YRYMRPL
Sbjct: 479 VIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPL 538
Query: 533 VEAGHVYIALPPLYKMSK-GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNA 591
+ GH+Y+A PPLYK++K GKGK +KI YA++D ELE+++++ GKGA +QR+KGLGEMN
Sbjct: 539 IANGHLYLAQPPLYKVAKLGKGK-DKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNP 597
Query: 592 NQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+QLWETT++PETRTL++VTI+D A+AE+ VS+LMGD PR+ ++ +F
Sbjct: 598 DQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYAEF 648
>ref|ZP_02634396.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens B str. ATCC 3626]
gb|EDT25269.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
perfringens B str. ATCC 3626]
Length = 648
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/651 (49%), Positives = 462/651 (70%), Gaps = 26/651 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+ ++ LE L+ VR RPGMYIGST + GLHH IWEI+DN++DE +G+G+ KV++
Sbjct: 6 NNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKAKVIL 65
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
NKD SV+V D+GRG+PTG H + T V+++FT LH GGKF YKTSGGLHGVG++VV
Sbjct: 66 NKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGVGAAVV 125
Query: 129 NALSAWLEVEITRDGSVYRQRFENG----------GKPVTTLKKVGTAPKSKSGTVVTFM 178
NALS WLEVE+ ++G +YRQRFE G PVT L+ VG + ++GT VTF+
Sbjct: 126 NALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGES--KETGTKVTFL 183
Query: 179 PDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYL 238
PD ++FST DFKF+ I ERL+E AF K +++ L D R ++ + +E++ E G+ DF++YL
Sbjct: 184 PDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGLLDFIDYL 243
Query: 239 NEDKETL--TPVIYMEGQDQ--DFQV--EVALQYNDGFSDNILSFVNNVRTKDGGSHETG 292
NE K L TPV++ EG+ + + Q+ E+ LQ+ D ++NI+S+VNN+ T + G+HETG
Sbjct: 244 NESKTPLHPTPVLF-EGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEAGTHETG 302
Query: 293 LKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGS 352
K+ +T+A ++A+K NL+KEKDK EG D REG++A++ I + + FEGQTK KLG+
Sbjct: 303 FKTGMTRAFKEWAKKLNLVKEKDKEFEGDDLREGMTAIVRIKI--TNPVFEGQTKTKLGN 360
Query: 353 PLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDK 412
A ++ + K ++ +N EVA+ ++ A+ A RE +K D R KK K
Sbjct: 361 NEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAER--KKIGKGT 418
Query: 413 GLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMAD 472
L+GK+ KN + NE +VEGDSAGGSAKQ RDR+FQ I+P +GK++NTEK K+ +
Sbjct: 419 APLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 478
Query: 473 ILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPL 532
++ +EE+ IG G+ ++N ED+ YDKIIIM+DAD DG HI+TL +T+ YRYMRPL
Sbjct: 479 VIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPL 538
Query: 533 VEAGHVYIALPPLYKMSK-GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNA 591
+ GH+Y+A PPLYK++K GKGK +KI YA++D ELE+++++ GKGA +QR+KGLGEMN
Sbjct: 539 IANGHLYLAQPPLYKVAKSGKGK-DKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNP 597
Query: 592 NQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+QLWETT++PETRTL++VTI+D A+AE+ VS+LMGD PR+ ++ +F
Sbjct: 598 DQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYAEF 648
>ref|NP_562985.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13]
dbj|BAB81775.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13]
Length = 650
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/651 (49%), Positives = 462/651 (70%), Gaps = 26/651 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
NNY+ ++ LE L+ VR RPGMYIGST + GLHH IWEI+DN++DE +G+G+ KV++
Sbjct: 8 NNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKAKVIL 67
Query: 70 NKDGSVSVADSGRGMPTGQHAMGIPT-VQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
NKD SV+V D+GRG+PTG H + T V+++FT LH GGKF YKTSGGLHGVG++VV
Sbjct: 68 NKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGVGAAVV 127
Query: 129 NALSAWLEVEITRDGSVYRQRFENG----------GKPVTTLKKVGTAPKSKSGTVVTFM 178
NALS WLEVE+ ++G +YRQRFE G PVT L+ VG + ++GT VTF+
Sbjct: 128 NALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGES--KETGTKVTFL 185
Query: 179 PDDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYL 238
PD ++FST DFKF+ I ERL+E AF K +++ L D R ++ + +E++ E G+ DF++YL
Sbjct: 186 PDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGLLDFIDYL 245
Query: 239 NEDKETL--TPVIYMEGQDQ--DFQV--EVALQYNDGFSDNILSFVNNVRTKDGGSHETG 292
NE K L TPV++ EG+ + + Q+ E+ LQ+ D ++NI+S+VNN+ T + G+HETG
Sbjct: 246 NESKTPLHPTPVLF-EGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEAGTHETG 304
Query: 293 LKSAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGS 352
K+ +T+A ++A+K NL+KEKDK EG D REG++A++ I + + FEGQTK KLG+
Sbjct: 305 FKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKI--TNPVFEGQTKTKLGN 362
Query: 353 PLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDK 412
A ++ + K ++ +N EVA+ ++ A+ A RE +K D R KK K
Sbjct: 363 NEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAER--KKIGKGT 420
Query: 413 GLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMAD 472
L+GK+ KN + NE +VEGDSAGGSAKQ RDR+FQ I+P +GK++NTEK K+ +
Sbjct: 421 APLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 480
Query: 473 ILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPL 532
++ +EE+ IG G+ ++N ED+ YDKIIIM+DAD DG HI+TL +T+ YRYMRPL
Sbjct: 481 VIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPL 540
Query: 533 VEAGHVYIALPPLYKMSK-GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNA 591
+ GH+Y+A PPLYK++K GKGK +KI YA++D ELE+++++ GKGA +QR+KGLGEMN
Sbjct: 541 IANGHLYLAQPPLYKVAKSGKGK-DKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNP 599
Query: 592 NQLWETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+QLWETT++PETRTL++VTI+D A+AE+ VS+LMGD PR+ ++ +F
Sbjct: 600 DQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYAEF 650
>ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
gb|EDM62957.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
Length = 643
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/639 (54%), Positives = 451/639 (70%), Gaps = 15/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+ Y D IQ+LEGL+AVRKRPGMYIGST A GLHHL++EIVDNAVDEAL+GF D I V I
Sbjct: 8 HEYGADEIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGFCDTIYVTI 67
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
NKD SV+V D+GRG+P G H G+P V+V+FT+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 68 NKDNSVTVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASVV 127
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS WLEVEI +G VY+QR+E G K + L +G + K+GT VTF+PDD IF T
Sbjct: 128 NALSNWLEVEIYHEGKVYQQRYERG-KVMEKLTVIGDCEEEKTGTKVTFLPDDTIFETTI 186
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TP 247
F FN + +R +E AFL K +K+ L D R ++P FHYE G+++FV YLN L
Sbjct: 187 FDFNVLKQRFREMAFLTKGLKIVLKDDREEEPKERTFHYEGGIKEFVTYLNRSATPLYEQ 246
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
+IY EG + VEVA+Q+ND +SDN FVNN+ T +GG+H G ++AITK NDYARK
Sbjct: 247 IIYCEGMVNNVSVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNAITKTFNDYARK 306
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
LL++ + NL G D REGL+A++S+ + + QFEGQTK KLG+ AR V+++VS++L
Sbjct: 307 NKLLRDNEPNLSGEDIREGLTAIISVKIEDP--QFEGQTKQKLGNSEARGAVDNVVSKQL 364
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
FL +N V +V K++ ++ AREAARKARD +R +K+ D L GKL KN
Sbjct: 365 EIFLEQNPAVGKIIVEKSVMSQRAREAARKARDLTR--RKSALDNMALPGKLADCSDKNP 422
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+ E+Y+VEGDSAGGSAK RDR QAILPLRGK+LN EKA++ I N EI M+ G
Sbjct: 423 ENCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFG 482
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+ DF++ + Y KIIIMTDAD DGAHI TLLLTF YR+M L++ G+VY+A PPLYK
Sbjct: 483 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 542
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWETTMDPETRT 605
+ K K K+ YA++D EL ++ E G+ +QRYKGLGEM+A QLWETTMDPE R
Sbjct: 543 LEKNK----KVWYAYSDEELSNIINEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRI 598
Query: 606 LIRVTIDDLARAERRV--SVLMGDKAAPRRQWIEDNVKF 642
L+RVT+DD +E + + LMGDK PRR++I +N K+
Sbjct: 599 LLRVTMDDETTSELDLTFTTLMGDKVEPRREFIVENAKY 637
>ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
SI]
dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
SI]
Length = 643
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/640 (55%), Positives = 460/640 (71%), Gaps = 22/640 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+ Y + IQ+LEGL+AVR+RPGMYIGST A GLHHL++E+VDN++DEA++GF D I+V++
Sbjct: 15 SKYGAEEIQILEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEAMAGFCDRIEVIL 74
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
N+DGS +V D+GRG+P H G P V+V+ T+LHAGGKFG GGYK SGGLHGVG SVV
Sbjct: 75 NEDGSATVIDNGRGIPVDIHPKTGRPAVEVVMTMLHAGGKFGGGGYKVSGGLHGVGVSVV 134
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS WLEVE+ RDG VY QR+ G PVT L G + S +GT VTFMPD +IF +
Sbjct: 135 NALSLWLEVEVKRDGKVYYQRYSRG-IPVTGLLVKGKS--SATGTKVTFMPDPEIFEDLI 191
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPV 248
F + +++RL+E +FL VK+ L D R + F ++ G+ DFV YLN+ K TP+
Sbjct: 192 FNQDILAQRLRELSFLNMGVKIILKDRRSGQETV--FQHDGGIMDFVRYLNKSK---TPL 246
Query: 249 ----IYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDY 304
IY++ Q D VEVALQY D + ++ILS+ NN+ T DGG+HE G K+A+T+ +NDY
Sbjct: 247 HGKPIYIQKQKDDVLVEVALQYTDTYVESILSYANNINTIDGGTHEAGFKAALTRVINDY 306
Query: 305 ARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVS 364
RK NLLK NL G D REGL+AV+S+ VPE QFEGQTK KLG+ R IV+S+V
Sbjct: 307 GRKYNLLKNGAGNLSGEDIREGLTAVISVKVPEP--QFEGQTKTKLGNSEVRSIVDSVVG 364
Query: 365 EKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQS 424
E L FL EN +A ++ KA+ A AREAARKAR+ +R +K+ + L GKL
Sbjct: 365 EGLGIFLEENPSIARRILEKAVTASRAREAARKARELTR--RKSALEGSTLPGKLADCSE 422
Query: 425 KNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVY 484
++ +ELYLVEGDSAGGSAKQGRDR+FQAILPLRGK+LN EKA++ IL NEEI M+
Sbjct: 423 RDPSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIRAMIT 482
Query: 485 TIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPP 544
+G G+G +F++ Y KII+M+DAD DGAHI+TLLLTFFYRYMRPL+E G+V+IA PP
Sbjct: 483 ALGTGIGEEFDVSKARYHKIILMSDADVDGAHIRTLLLTFFYRYMRPLIEKGYVFIAQPP 542
Query: 545 LYKMSKGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPET 603
LY++ KGK EK YA++D ELE L + G+ G +QRYKGLGEMNA QLWETTMDPET
Sbjct: 543 LYRVK--KGKLEK--YAYSDAELEKLLDQIGRDGVSIQRYKGLGEMNAEQLWETTMDPET 598
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
RT+++V ++D A+ S+LMGD+ PRR +I++N +
Sbjct: 599 RTVMQVNLEDAIEADAVFSMLMGDRVEPRRDFIQENARLV 638
>ref|YP_001664019.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gb|ABY93683.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter
pseudethanolicus ATCC 33223]
Length = 633
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/633 (53%), Positives = 459/633 (72%), Gaps = 16/633 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y IQ+LEGL+AVRKRPGMYIGST + GLHHL++E+VDN++DEAL+G+ +I V I+K
Sbjct: 7 YTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHK 66
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRG+PT H + P V+V T+LHAGGKF YK SGGLHGVG SVVNA
Sbjct: 67 DNSITVEDDGRGIPTDIHPKVRKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS LEV + + G +YRQR+E G P T L+ ++GT +TF PD +IF F
Sbjct: 127 LSEKLEVIVKQHGKIYRQRYERG-VPKTDLEV--IGETEETGTTITFKPDKEIFEETVFD 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++ +++RL+E AFL K + + L D R D E F+YE G+ FV+YLN +KE L I
Sbjct: 184 YDVLAQRLRELAFLNKGINIKLIDER--DGKEEVFNYEGGIISFVKYLNRNKEVLHEEPI 241
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
YME ++ D++VEV +QYND +++NI SF NN+ T++GG+H G K+A+TK +NDYARK
Sbjct: 242 YMEAKNSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYG 301
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
++K+ +KNL+G D REGL+A++S+ + ++ QFEGQTK KLG+ R IVE++V+EKL+
Sbjct: 302 IIKDNEKNLQGEDVREGLTAIVSVKL--KNPQFEGQTKTKLGNSEMRSIVENVVTEKLSA 359
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN VA +V KA +A AREAARKAR+ +R +K+ + L GKL K+ K
Sbjct: 360 FLEENPSVAKVIVEKATQAARAREAARKARELTR--RKSALENTTLPGKLADCSEKDPSK 417
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
EL+LVEGDSAGGSAK GR+ +FQAILPLRGK+LN EKA++ IL NEEI M+ +G G
Sbjct: 418 CELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTG 477
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G +F++ + Y K++IMTDAD DG+HI+TLLLTFFYR+MRPL+E G+VYIA PPLYK++
Sbjct: 478 IGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGK K+ YA++D EL+ + E G+ +QRYKGLGEMNA+QLW+TTMDPE RT+++
Sbjct: 538 KGK----KVYYAYSDRELDRILNEIGRENYTVQRYKGLGEMNADQLWDTTMDPEKRTMLK 593
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
VT++D A+ ++LMGDK PRR++IE + K
Sbjct: 594 VTLEDAIAADEIFTILMGDKVEPRREFIEKHAK 626
>ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Peptostreptococcus micros ATCC
33270]
gb|EDP23987.1| hypothetical protein PEPMIC_00566 [Peptostreptococcus micros ATCC
33270]
Length = 638
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/639 (52%), Positives = 440/639 (68%), Gaps = 17/639 (2%)
Query: 9 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVV 68
I NY I+VL GL+ VR RPGMYIGST GLHHL++E+VDN++DEAL+G D I V
Sbjct: 6 IRNYGAKDIRVLTGLEPVRLRPGMYIGSTGVKGLHHLVYEVVDNSIDEALAGVCDTITVT 65
Query: 69 INKDGSVSVADSGRGMPTGQHAM-GIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127
I +D SV V D+G G+P H G T++ + TILHAGGKF Y+ SGGLHGVG SV
Sbjct: 66 IFEDNSVRVEDNGSGIPVEVHPQTGKSTLETVLTILHAGGKFNNNAYQVSGGLHGVGVSV 125
Query: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187
VNALS WL + RDG +Y Q+F G + L+ VGT+ ++GT++TF PD +IF T
Sbjct: 126 VNALSEWLIANVKRDGKLYEQQFSRG-NTTSKLEVVGTS--KETGTIITFKPDSEIFDTT 182
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-T 246
++ + R +E AFL K VK+ TD R D E FHYE G++ FVEY+N +K L
Sbjct: 183 IYEKEILRNRFREMAFLNKGVKIIFTDERED--FTETFHYEGGIKSFVEYMNRNKNNLHN 240
Query: 247 PVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
VIY +GQ D QVE+++QY DG+S+N+L+F NN+ T +GGSH G ++A+T+ +NDY R
Sbjct: 241 EVIYFQGQRGDSQVEISMQYTDGYSENVLTFANNIHTPEGGSHLVGFRTALTRTLNDYGR 300
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
K NL+K+KD NL+G D REGL+ ++SI +P QFEGQTK KLG+ +R IVE+ + +
Sbjct: 301 KYNLIKDKDANLQGDDTREGLTGIVSIKLPNP--QFEGQTKAKLGNSESRGIVETFLYDN 358
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L FL EN +V ++ KA + AREAARKARD +R KK+ D L GKL+ Q +
Sbjct: 359 LMTFLEENPKVGKIIIEKAQSSARAREAARKARDLTR--KKSILDNTTLPGKLSDCQESD 416
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
NE+YLVEGDSAGGSAKQGRD KFQA+LPL+GK++N EKA++ IL EEI +M+
Sbjct: 417 ISVNEIYLVEGDSAGGSAKQGRDSKFQAVLPLKGKIMNVEKARIDKILGYEEIKSMITAF 476
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+G DFNL+++ Y KI+IMTDAD DGAHI+TL+LTFFYRYM+ L+E GHVYIA PPLY
Sbjct: 477 GTGIGKDFNLDNLRYGKIVIMTDADVDGAHIRTLILTFFYRYMKELIEQGHVYIAQPPLY 536
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWETTMDPETRT 605
+ KG + + Y WTD EL+ E G+ + +QRYKGLGEMN QLWETTM+PE R
Sbjct: 537 GIIKG---VKVVKYCWTDEELQASLDELGRDSHRIQRYKGLGEMNPAQLWETTMNPENRL 593
Query: 606 LIRVTIDD--LARAERRVSVLMGDKAAPRRQWIEDNVKF 642
++V IDD L + S LMGDK PRR++IE N K+
Sbjct: 594 FLQVNIDDEELVSIDETFSTLMGDKVEPRREFIEQNAKY 632
>gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar sotto]
Length = 632
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/640 (54%), Positives = 459/640 (71%), Gaps = 19/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIARPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 628
>ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L]
gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
[Bacillus cereus E33L]
Length = 640
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/648 (53%), Positives = 465/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPD 177
Query: 181 DKIF-STIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T +++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 178 PEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK ++LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA ++ K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLW
Sbjct: 532 IYIAQPPLFKVQQGK----KIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635
>ref|YP_642798.1| DNA gyrase, B subunit [Rubrobacter xylanophilus DSM 9941]
gb|ABG02986.1| DNA gyrase, B subunit [Rubrobacter xylanophilus DSM 9941]
Length = 644
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/639 (52%), Positives = 443/639 (69%), Gaps = 20/639 (3%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
++Y+ +IQVLEGL+AV++RPGMYIGST GLHHL+WEIVDN++DEAL+G+ +I V +
Sbjct: 12 SDYDASSIQVLEGLEAVKRRPGMYIGSTGPRGLHHLVWEIVDNSIDEALAGYCTEISVTV 71
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+ D SV+V+D GRGMP G G +VI T LHAGGKF YK SGGLHGVG+SVV
Sbjct: 72 HPDNSVTVSDDGRGMPVGVMEKYGKSAAEVIMTTLHAGGKFDGQTYKVSGGLHGVGASVV 131
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTL---KKVGTAPKSKSGTVVTFMPDDKIFS 185
NALS WLE+EI RDG ++ QR+E G PVT L +K+G + +GT V F PD +IF
Sbjct: 132 NALSEWLELEIRRDGHLWTQRYERG-FPVTGLERGRKLGK--REGTGTTVRFRPDPQIFE 188
Query: 186 TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL 245
T++F F+T+S R +ESAFL K +++ L D R + + + YE G++DFV ++NE K+ +
Sbjct: 189 TVEFSFDTLSRRFRESAFLNKGLRIRLADEREEGREVV-YRYEGGIKDFVAHINEAKDPV 247
Query: 246 -TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDY 304
++Y +++ VEVA+Q+N G+ D++ +F NN+ T +GG+H +G ++A+T+ +N+Y
Sbjct: 248 HKTILYFHREEEAGDVEVAMQWNSGYQDSVFTFANNINTHEGGTHLSGFRAALTRTINEY 307
Query: 305 ARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVS 364
AR+ LLKEK++NL G D REGL+AV+S+ + E QFEGQTK KLG+ + +VES +
Sbjct: 308 ARQKGLLKEKEENLTGDDIREGLAAVISVKLREP--QFEGQTKTKLGNTEIKGLVESATN 365
Query: 365 EKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQS 424
L FL EN A +V KAI A AR AA KAR R G + L GKL S
Sbjct: 366 RHLAEFLEENPGQARAIVTKAINASRARLAASKARKAIRKGYL---ESSTLPGKLADCSS 422
Query: 425 KNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVY 484
K+ ++ELY+VEGDSAGGSAKQGRDR FQAILPLRGK+LN EKA + +L N EI M+
Sbjct: 423 KDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLSNAEIQAMIS 482
Query: 485 TIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPP 544
IGAGVG FN+E+ Y KI+IMTDAD DG+HI+TL+LTF YR M L+EAG+VYIA PP
Sbjct: 483 AIGAGVGDSFNIEEARYHKIVIMTDADVDGSHIRTLVLTFLYRNMPELIEAGYVYIAQPP 542
Query: 545 LYKMSKGKGKTEKIAYAWTDGEL-EDLRREFGKG-AILQRYKGLGEMNANQLWETTMDPE 602
LYK++ + + Y ++D EL E LRR G A + R+KGLGEMN QLWETTMDP
Sbjct: 543 LYKITHNR----RDVYVYSDAELQETLRRLRADGSATVSRFKGLGEMNPQQLWETTMDPA 598
Query: 603 TRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
RTL++VTID A A+ + LMGDK PR+ +IE N +
Sbjct: 599 NRTLLQVTIDSAATADELFTALMGDKVEPRKAFIEANAR 637
>gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar tohokuensis]
Length = 632
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/639 (54%), Positives = 458/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T+S R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLSTRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQA LPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>ref|YP_001373376.1| DNA gyrase, B subunit [Bacillus cereus subsp. cytotoxis NVH 391-98]
gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cereus subsp. cytotoxis NVH 391-98]
Length = 640
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/648 (53%), Positives = 463/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +KE+ N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKEMQANSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I VVI +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVVIEEDDSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G ++ Q++E G PV LK +G ++GTV F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGET--DRTGTVTRFKPD 177
Query: 181 DKIF-STIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T + F+ ++ R++E AFL +N+K+++ D R ++ +EFHYE G++ +VE+LN
Sbjct: 178 PEIFKETTVYDFDILATRMRELAFLNRNIKLTIEDKR-ENKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVEGAKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++ Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG--KGAILQRYKGLGEMNANQLW 595
VYIA PPL+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLW
Sbjct: 532 VYIAQPPLFKVQQGK----KIQYAYNEKELERILAELPAQPKPSIQRYKGLGEMNPAQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635
>gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis]
Length = 641
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/636 (51%), Positives = 455/636 (71%), Gaps = 18/636 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+ Y+ IQVLEGL+AVR+RPGMYIGST A GLHHL++EIVDN++DEAL+G+ D I+V+I
Sbjct: 13 STYDASQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCDTIEVII 72
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
++D S+ V+D+GRG+P H MG P V+V T+LHAGGKFG GYK SGGLHGVG SVV
Sbjct: 73 HEDNSIEVSDNGRGIPVDIHPKMGKPAVEVALTVLHAGGKFGGEGYKVSGGLHGVGLSVV 132
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS L+V + R+G V+ Q +E G +T LK VG A +GT + F PD IF ++
Sbjct: 133 NALSEKLKVTVRRNGKVHEQYYERG-VTMTDLKVVGNA--ESTGTTIYFKPDGLIFEELE 189
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLR-GDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
+ + T+S RL+E +FL + VK++L DLR G + I F +E G+ DFV++LN +K+ + P
Sbjct: 190 YSYETLSHRLRELSFLNRGVKITLKDLRTGQESI---FAHEGGIIDFVKFLNRNKDLIHP 246
Query: 248 -VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYAR 306
VIY + + + VE+ALQYNDG+S+ + S+ NN+ T++GG+HE+G K+A+T+ +NDY R
Sbjct: 247 HVIYFQNEKEGVHVEMALQYNDGYSETLFSYANNINTQEGGTHESGFKTALTRVINDYGR 306
Query: 307 KTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEK 366
+ N +KE D NL G D REG++AV+S+ V E QFEGQTK KLG+ R I +S V+E
Sbjct: 307 RINQIKENDSNLSGEDIREGITAVISVKVREP--QFEGQTKTKLGNSEVRGITDSCVTEG 364
Query: 367 LTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKN 426
L+ +L EN V ++ KA+ A AREAARKAR+ +R +K+ + L GKL K+
Sbjct: 365 LSTYLEENPSVGKKVIEKALSAMRAREAARKARELTR--RKSALESTSLPGKLADCSFKD 422
Query: 427 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTI 486
ELY+VEGDSAGGSAKQGRDR+FQAILPLRGK+LN EK+++ IL NEEI ++ +
Sbjct: 423 PSMCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILSNEEIRALITAL 482
Query: 487 GAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 546
G G+G DF+L Y ++ +MTDAD DG+HI+TLLLTFF+R+M+PL+E G+VYIA PPLY
Sbjct: 483 GTGIGEDFDLSKARYHRVCLMTDADVDGSHIRTLLLTFFFRHMKPLIENGYVYIAQPPLY 542
Query: 547 KMSKGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPETRT 605
++ KG+ + Y + D EL + G+ G +QRYKGLGEMN QLW+TTMDPE RT
Sbjct: 543 QVKKGR----DVRYYYHDNELNQYLDKNGRDGVTIQRYKGLGEMNPEQLWDTTMDPEHRT 598
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
+++V+++D A AE + LMGD+ PRR++I+ + K
Sbjct: 599 ILQVSMEDAAEAESIFTTLMGDRVEPRREFIQSHAK 634
>ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
ref|YP_012619.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b F2365]
ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
ref|ZP_01928775.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
ref|ZP_01931427.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N3-165]
ref|ZP_01934003.1| DNA gyrase, B subunit [Listeria monocytogenes F6900]
ref|ZP_01935117.1| DNA gyrase, B subunit [Listeria monocytogenes J0161]
ref|ZP_01942142.1| DNA gyrase, B subunit [Listeria monocytogenes 10403S]
ref|ZP_01945292.1| DNA gyrase, B subunit [Listeria monocytogenes HPB2262]
ref|ZP_02278460.1| DNA gyrase, B subunit [Listeria monocytogenes FSL J1-194]
ref|ZP_02285774.1| DNA gyrase, B subunit [Listeria monocytogenes FSL R2-503]
ref|ZP_02285958.1| DNA gyrase, B subunit [Listeria monocytogenes FSL J1-175]
ref|ZP_02318970.1| DNA gyrase, B subunit [Listeria monocytogenes FSL J2-064]
gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes]
emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes]
gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b F2365]
gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
gb|EBA20595.1| DNA gyrase, B subunit [Listeria monocytogenes J0161]
gb|EBA21990.1| DNA gyrase, B subunit [Listeria monocytogenes 10403S]
gb|EBA27682.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
gb|EBA30579.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N3-165]
gb|EBA33252.1| DNA gyrase, B subunit [Listeria monocytogenes F6900]
gb|EBA35973.1| DNA gyrase, B subunit [Listeria monocytogenes HPB2262]
Length = 646
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/646 (53%), Positives = 462/646 (71%), Gaps = 16/646 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+T + ++YN+D IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDNA+DEAL+GF
Sbjct: 6 ITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGF 65
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
+I++ I D S++V D+GRG+PTG +G PTV+VIFT+LHAGGKFG GGYK SGGL
Sbjct: 66 CTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G Y QRFE G V +++ G GT+V F PD
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERG-DVVMDMEEQGET--DYRGTIVHFTPD 182
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF+ T +F F+T+ R +E AFL + + +S+ D R + + ++FHYE G++ +VE+LN
Sbjct: 183 PQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYVEHLN 242
Query: 240 EDKETL-TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
+ K+ + P IY+EG+ D VE+++QYN GFS NI+SF NN+ T +GG+HE+G K+A+T
Sbjct: 243 KAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTALT 302
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ +NDYAR+ L K+ D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I
Sbjct: 303 RVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARSI 360
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
+ + SE L F++EN +VA +V K + A AR AA++AR+ +R K + + L GK
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVAR--KSSGLEISSLPGK 418
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
L S+N + +ELY+VEGDSAGGSAKQGRDR FQAILP+RGK+LN EKA++ IL NEE
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I T+ +G G G DF++ Y K+IIMTDAD DGAHI+TLLLT FYRYMRPL++AG++
Sbjct: 479 IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 538
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWE 596
YIA PPLY++ GK +I Y ++DG+LED +QRYKGLGEMN QLW+
Sbjct: 539 YIAQPPLYQIKHGK----QIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594
Query: 597 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TTM+PE RTL++V I D A+ +LMGD+ PRR++IEDN ++
Sbjct: 595 TTMNPEHRTLLQVNIKDAIDADETFEMLMGDRVEPRRKFIEDNAQY 640
>gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar seoulensis]
Length = 632
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/640 (54%), Positives = 458/640 (71%), Gaps = 19/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGG AKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGCAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 628
>emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 640
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/635 (52%), Positives = 453/635 (71%), Gaps = 17/635 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+NY + IQVLEGL+ VRKRPGMYIG+T GLHHL++E+VDN++DEAL+G+ I+V I
Sbjct: 3 SNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDI 62
Query: 70 NKDGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
DGSVSV D GRG+PT H G ++ + TILHAGGKFG GGYK SGGLHGVG SVV
Sbjct: 63 KADGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGISVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST-I 187
NALSAW++V + RD V+ QR+E G PVT L + + K+GT V F+PD +IFS I
Sbjct: 123 NALSAWVDVTVWRDHKVHTQRYER-GIPVTELVS-SPSQEEKTGTRVNFLPDTEIFSQGI 180
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
+F ++T+S RL+E A+L VK++ +D R ++P IE + YE G++++V Y+ +KETL
Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYRAEEPHIETYCYEGGIKEYVAYMCREKETLHK 240
Query: 248 -VIYMEGQDQDFQVEVALQYN-DGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
+IY+ G+ +EVA Q+ D +SDNIL F NN+RT DGG+H GLK+ +T+ +N+ A
Sbjct: 241 DIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N +KE + NL G + REGL+AV+S+ VPE +FEGQTK KLG+ R IV+S+V E
Sbjct: 301 RKRNKIKENEPNLAGENVREGLTAVISVKVPEP--EFEGQTKTKLGNTEVRGIVDSLVGE 358
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
L +L +N +VA ++ KA++A A EAAR+ARD R +K+ + L GKL +
Sbjct: 359 TLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVR--RKSVLESSPLPGKLADCSER 416
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +K+E+Y+VEGDSAGGSAKQGRDR+FQAILPLRGK+LN EK A I KN EI +++
Sbjct: 417 DPEKSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITA 476
Query: 486 IGAGV-GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPP 544
+G G+ G DF+ + Y +I++MTDAD DGAHI+TLLLTFFYRY + L++ G+VYIA PP
Sbjct: 477 LGLGIKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPP 536
Query: 545 LYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWETTMDPE 602
LYK+ +GK +Y ++D EL+ EF A +QR+KGLGEM QLW+TTM+PE
Sbjct: 537 LYKLERGKNH----SYCYSDRELQQKIAEFPSNANYTIQRFKGLGEMMPQQLWDTTMNPE 592
Query: 603 TRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIE 637
TRTL RV I+D A+AE ++LMGD+ APRR++IE
Sbjct: 593 TRTLKRVEIEDAAKAEELFTILMGDRVAPRREFIE 627
>ref|YP_001661669.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514]
gb|ABY91333.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514]
Length = 633
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/633 (53%), Positives = 458/633 (72%), Gaps = 16/633 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y IQ+LEGL+AVRKRPGMYIGST + GLHHL++E+VDN++DEAL+G+ +I V I+K
Sbjct: 7 YTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHK 66
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S++V D GRG+PT H +G P V+V T+LHAGGKF YK SGGLHGVG SVVNA
Sbjct: 67 DNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS LEV + + G ++RQ +E G P T L+ ++GT +TF PD +IF F
Sbjct: 127 LSEKLEVVVKQRGKIFRQTYERG-VPKTDLEI--IGETEETGTTITFKPDKEIFEETVFN 183
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++ +++RL+E AFL K + + L D R D E F+YE G+ FV+YLN +KE L I
Sbjct: 184 YDVLAQRLRELAFLNKGINIRLIDER--DGKEEVFNYEGGIISFVKYLNRNKEVLHEEPI 241
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
YME ++ D++VEV +QYND +++NI SF NN+ T++GG+H G KSA+TK +NDYARK
Sbjct: 242 YMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYARKYG 301
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
++K+ +KNL+G D REGL+A++S+ + ++ QFEGQTK KLG+ R IVE++V EKL+
Sbjct: 302 IIKDNEKNLQGEDVREGLTAIVSVKL--KNPQFEGQTKTKLGNSEMRSIVENVVIEKLSA 359
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN VA +V KA +A AREAARKAR+ +R +K+ + L GKL K+ K
Sbjct: 360 FLEENPSVAKVIVEKATQAARAREAARKARELTR--RKSALENTTLPGKLADCSEKDPSK 417
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
EL+LVEGDSAGGSAK GR+ +FQAILPLRGK+LN EKA++ IL NEEI M+ +G G
Sbjct: 418 CELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTG 477
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G +F++ + Y K++IMTDAD DG+HI+TLLLTFFYR+MRPL+E G+VYIA PPLYK++
Sbjct: 478 IGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGK-GAILQRYKGLGEMNANQLWETTMDPETRTLIR 608
KGK K+ YA++D EL+ + E G+ +QRYKGLGEMNA+QLW+TTMDPE RT+++
Sbjct: 538 KGK----KVYYAYSDRELDRILNEIGRENYTVQRYKGLGEMNADQLWDTTMDPEKRTMLK 593
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
VT++D A+ ++LMGDK PRR++IE + K
Sbjct: 594 VTLEDAIAADEIFTILMGDKVEPRREFIEKHAK 626
>ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
Length = 642
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/648 (53%), Positives = 463/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 3 MEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 62
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 63 CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 122
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD
Sbjct: 123 HGVGASVVNALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPD 179
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T + F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 180 PEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 238
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+
Sbjct: 239 RSKQPIHEEPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 297
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR
Sbjct: 298 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEART 355
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 356 ITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPG 413
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLW
Sbjct: 534 IYIAQPPLFKIQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 589
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 590 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 637
>ref|ZP_02689013.1| DNA gyrase, B subunit [Listeria monocytogenes FSL J2-071]
Length = 646
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/646 (53%), Positives = 462/646 (71%), Gaps = 16/646 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+T + ++YN+D IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDNA+DEAL+GF
Sbjct: 6 ITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGF 65
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
+I++ I D S++V D+GRG+PTG +G PTV+VIFT+LHAGGKFG GGYK SGGL
Sbjct: 66 CTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G Y QRFE G V +++ G GT+V F PD
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERG-DVVMDMEEQGET--DYRGTIVHFTPD 182
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF+ T +F F+T+ R +E AFL + + +S+ D R + + ++FHYE G++ +VE+LN
Sbjct: 183 PQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYVEHLN 242
Query: 240 EDKETL-TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
+ K+ + P IY+EG+ D VE+++QYN GFS NI+SF NN+ T +GG+HE+G K+A+T
Sbjct: 243 KAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTALT 302
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ +NDYAR+ L K+ D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I
Sbjct: 303 RVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARSI 360
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
+ + SE L F++EN +VA +V K + A AR AA++AR+ +R K + + L GK
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVAR--KSSGLEISSLPGK 418
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
L S+N + +ELY+VEGDSAGGSAKQGRDR FQAILP+RGK+LN EKA++ IL NEE
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I T+ +G G G DF++ Y K+IIMTDAD DGAHI+TLLLT FYRYMRPL++AG++
Sbjct: 479 IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 538
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWE 596
YIA PPLY++ GK ++ Y ++DG+LED +QRYKGLGEMN QLW+
Sbjct: 539 YIAQPPLYQIKHGK----QVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594
Query: 597 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TTM+PE RTL++V I D A+ +LMGD+ PRR++IEDN ++
Sbjct: 595 TTMNPEHRTLLQVNIKDAIDADETFEMLMGDRVEPRRKFIEDNAQY 640
>ref|ZP_02525028.1| DNA gyrase subunit B [Bacillus cereus AH1134]
ref|ZP_02580797.1| DNA gyrase subunit B [Bacillus cereus B4264]
dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579]
Length = 640
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/648 (53%), Positives = 463/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPD 177
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T + F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 178 PEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLW
Sbjct: 532 IYIAQPPLFKIQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635
>gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar ostriniae]
Length = 632
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/640 (54%), Positives = 459/640 (71%), Gaps = 19/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GL+HL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLYHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAIL--QRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E L QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKLGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 628
>ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262]
emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua]
Length = 646
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/646 (53%), Positives = 461/646 (71%), Gaps = 16/646 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+T + ++YN+D IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDNA+DEAL+GF
Sbjct: 6 ITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGF 65
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
+I++ I D S++V D+GRG+PTG +G PTV+VIFT+LHAGGKFG GGYK SGGL
Sbjct: 66 CTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G Y QRFE G V ++ G GT+V F PD
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERG-DVVMDMEVQGET--DYRGTIVHFTPD 182
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF+ T +F F+T+ R +E AFL + + +S+ D R + + ++FHYE G++ +VE+LN
Sbjct: 183 PQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYVEHLN 242
Query: 240 EDKETL-TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
+ K+ + P IY+EG+ D VE+++QYN GFS NI+SF NN+ T +GG+HE+G K+A+T
Sbjct: 243 KAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTALT 302
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ +NDYAR+ L K+ D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I
Sbjct: 303 RVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARSI 360
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
+ + SE L F++EN +VA +V K + A AR AA++AR+ +R K + + L GK
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVAR--KSSGLEISSLPGK 418
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
L S+N + +ELY+VEGDSAGGSAKQGRDR FQAILP+RGK+LN EKA++ IL NEE
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I T+ +G G G DF++ Y K+IIMTDAD DGAHI+TLLLT FYRYMRPL++AG++
Sbjct: 479 IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 538
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWE 596
YIA PPLY++ GK +I Y ++DG+LED +QRYKGLGEMN QLW+
Sbjct: 539 YIAQPPLYQIKHGK----QIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594
Query: 597 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TTM+PE RTL++V I D A+ +LMGD+ PRR++IEDN ++
Sbjct: 595 TTMNPEHRTLLQVNIKDAIDADETFEMLMGDRVEPRRKFIEDNAQY 640
>ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
27755]
gb|EDR46000.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
27755]
Length = 643
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/639 (54%), Positives = 455/639 (71%), Gaps = 15/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+ Y D IQ+LEGL+AVRKRPGMYIGST + GLHHL++EIVDNAVDEAL+GF D I V I
Sbjct: 8 HEYGADEIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCDTIHVTI 67
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
N D SV+V D+GRG+P G H G+P V+V+FT+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 68 NPDNSVTVTDNGRGIPVGINHKSGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASVV 127
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
NALS WLEVEI +G VYRQR+E G K L+ +G K+GT VTF+PD +IF T
Sbjct: 128 NALSVWLEVEICHEGKVYRQRYERG-KVAKKLEVIGECEPGKTGTKVTFLPDGEIFETTI 186
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TP 247
F ++ + +R +E AFL K +K+ L D R +PI + FHYE G+++FVEYLN L
Sbjct: 187 FDYSILQQRFREMAFLTKGLKIVLRDERPQEPIEKTFHYEGGIKEFVEYLNRSTTPLYEQ 246
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
+IY EG + VEVA+Q+ND +++N FVNN+ T +GG+H G ++A+TK NDYARK
Sbjct: 247 IIYCEGIVNNVSVEVAMQHNDSYNENSYGFVNNITTPEGGTHIVGFRNALTKTFNDYARK 306
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
LLK+ + NL G D REGL+A++S+ + + QFEGQTK KLG+ AR V+++VSE+L
Sbjct: 307 NKLLKDNEPNLTGEDIREGLTAIISVKIEDP--QFEGQTKQKLGNSEARGAVDNVVSEQL 364
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
FL +N +VA V K++ A+ AREAARKARD +R +K+ D L GKL KN
Sbjct: 365 QIFLEQNPQVAKVTVEKSVMAQRAREAARKARDLTR--RKSALDGMSLPGKLADCSDKNP 422
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+K E+Y+VEGDSAGGSAK RDR QAILPLRGK+LN EKA++ I N EI M+ G
Sbjct: 423 EKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDRIYGNAEIKAMITAFG 482
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+ DF++ + Y KIIIMTDAD DGAHI TLLLTF YR+M L++ G+VY+A PPLYK
Sbjct: 483 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYK 542
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGK--GAILQRYKGLGEMNANQLWETTMDPETRT 605
+ + K K+ YA++D EL+ + +E G+ +QRYKGLGEM+A QLW+TTMDPE R
Sbjct: 543 LERNK----KVWYAYSDEELDSILQEVGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEHRV 598
Query: 606 LIRVTIDDLARAERRV--SVLMGDKAAPRRQWIEDNVKF 642
L+RVT+DD +E + + LMGDK PRR++IE+N ++
Sbjct: 599 LLRVTMDDETASELDLTFTTLMGDKVEPRREFIEENAQY 637
>gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar shandongiensis]
Length = 632
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/640 (54%), Positives = 458/640 (71%), Gaps = 19/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ + +Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISGIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLGKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 628
>ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
Length = 641
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/648 (52%), Positives = 457/648 (70%), Gaps = 17/648 (2%)
Query: 1 MLTKKEITINN-YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALS 59
M + +IT N Y D IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+
Sbjct: 1 MSMEDKITENQEYGADQIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALA 60
Query: 60 GFGDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSG 118
G+ D I+VV+ +D S++V D+GRG+P Q G P ++VI T+LHAGGKFG GGYK SG
Sbjct: 61 GYCDHIQVVVEEDNSITVKDNGRGIPVDIQQKTGRPALEVIMTVLHAGGKFGGGGYKVSG 120
Query: 119 GLHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFM 178
GLHGVG+SVVNALS+ LEV + RDG V+ F+ G P +K +G +GTV F
Sbjct: 121 GLHGVGASVVNALSSELEVYVHRDGKVHFLSFKKG-VPDGEIKVIGDT--DITGTVTHFR 177
Query: 179 PDDKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEY 237
PD +IF+ T ++ F+T+ +RL+E AFL K +K+S+ D R D + +HYE G+ +VE+
Sbjct: 178 PDTEIFTETTEYNFDTLEQRLRELAFLNKGLKISIEDKRTDREQVT-YHYEGGISSYVEF 236
Query: 238 LNEDKETLTPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
+N++KE L + EG+DQ VEVA+QYNDGF+ N+ SF NN+ T +GGSHE G +S +
Sbjct: 237 INKNKEVLHEPFFAEGEDQGISVEVAIQYNDGFASNLYSFANNIHTYEGGSHEVGFRSGL 296
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDYA+K L+K+ D NL G D REG++ ++SI P+ QFEGQTK KLG+ R
Sbjct: 297 TRIINDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDP--QFEGQTKTKLGNSEVRA 354
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I + + SE + FL EN A +V K + A AR AA+KAR+ +R +K+ + L G
Sbjct: 355 ITDGVFSEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELTR--RKSNLEISNLPG 412
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL S++A +ELY+VEGDSAGGSAK GRDR FQAILPLRGK+LN EKA++ IL N
Sbjct: 413 KLADCSSRDAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNN 472
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ M+ +G+GVG +F++ Y KI+IMTDAD DGAHI+TLLLTFFYRYMRPL+E G+
Sbjct: 473 EVRAMITALGSGVGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEQGY 532
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPLY++ +GK + YA+ D EL+ + E K +QRYKGLGEMNA+QLW
Sbjct: 533 IYIAQPPLYQVKQGK----TVNYAYNDKELDRILNEIPKAPKPNIQRYKGLGEMNADQLW 588
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
+TTMDP+TRTL++V + D A++ +LMGDK PRR +IE+N ++
Sbjct: 589 DTTMDPDTRTLLQVELSDAIDADQVFDMLMGDKVEPRRIFIEENAQYV 636
>ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1]
gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1]
Length = 638
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/638 (53%), Positives = 462/638 (72%), Gaps = 17/638 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
+Y+++ IQVLEGL+AVRKRPGMYIGST + GLHHL+WEIVDN++DEAL+G+ +IKV I
Sbjct: 8 SYDENQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYCSEIKVSIE 67
Query: 71 KDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
KD S++V D+GRG+P G H MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVVN
Sbjct: 68 KDNSITVQDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 127
Query: 130 ALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TID 188
ALS LEV + RDG ++ Q+FE G P LK G + +GT++ F PD +IF+ T +
Sbjct: 128 ALSTELEVFVHRDGKIHYQKFEKG-VPSGDLKVTGES--DVTGTIIHFKPDPEIFTETTE 184
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TP 247
++++ ++ RL+E AFL + +K+ + D R +D E+HYE G++ +VE+LN KE +
Sbjct: 185 YEYDILANRLRELAFLNRGIKIIIEDNRVEDKK-NEYHYEGGIKSYVEHLNRSKEVVHEE 243
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
IY+EG+ + VE+ALQYNDGF+ N+ SF NN+ T +GG+HE+G K+A+T+ +NDYARK
Sbjct: 244 PIYIEGEKDNISVEIALQYNDGFASNLYSFANNIHTYEGGTHESGFKTALTRVINDYARK 303
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
+L KE D NL G D REG++A++SI P+ QFEGQTK KLG+ AR I +++ SE
Sbjct: 304 NHLYKESDANLSGEDVREGITAIISIKHPDP--QFEGQTKTKLGNSEARTITDALFSEHF 361
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
FLLEN VA +V K + A AR AA+KAR+ +R +K+ + L GKL S++
Sbjct: 362 ESFLLENPVVARKVVDKGLMAARARLAAKKARELTR--RKSALEVSSLPGKLADCSSRDP 419
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
K +E+Y+VEGDSAGGSAKQGRDR FQAILPLRGK++N EKA++ IL N E+ M+ +G
Sbjct: 420 KISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAMITALG 479
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+G DF++ Y K++IMTDAD DGAHI+TLLLTFFYRYMR ++EAG++YIA PPLY+
Sbjct: 480 TGIGEDFDISKARYQKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPLYQ 539
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPETRT 605
+ +GK KI Y ++D +LE+ + +QRYKGLGEMNA QLWETTMDPE RT
Sbjct: 540 IKQGK----KIEYVYSDKQLEEALAQMPAQPKPGIQRYKGLGEMNATQLWETTMDPEYRT 595
Query: 606 LIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
L++V+++D A+ +LMGDK PRR +IEDN +
Sbjct: 596 LLQVSLEDAIEADETFEMLMGDKVEPRRNFIEDNAAYV 633
>ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
emb|CAK19424.1| gyrB [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 646
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/646 (53%), Positives = 462/646 (71%), Gaps = 16/646 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+T + ++YN+D IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDNA+DEAL+GF
Sbjct: 6 ITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGF 65
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
+I++ I D S++V D+GRG+PTG +G PTV+VIFT+LHAGGKFG GGYK SGGL
Sbjct: 66 CTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G Y QRFE G V ++ G GT+V F PD
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERG-DVVMDMEVQGET--DYRGTIVHFTPD 182
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF+ T +F F+T+ R +E AFL + + +S+ D R + + ++FHYE G++ +VE+LN
Sbjct: 183 PQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYVEHLN 242
Query: 240 EDKETL-TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 298
+ K+ + P IY+EG+ D VE+++QYN GFS NI+SF NN+ T +GG+HE+G K+A+T
Sbjct: 243 KAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTALT 302
Query: 299 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 358
+ +NDYAR+ + K+ D NL G D REGL+A++SI P+ QFEGQTK KLG+ AR I
Sbjct: 303 RVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDP--QFEGQTKTKLGNSEARSI 360
Query: 359 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 418
+ + SE L F++EN +VA +V K + A AR AA++AR+ +R K + + L GK
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVAR--KSSGLEISSLPGK 418
Query: 419 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 478
L S+N + +ELY+VEGDSAGGSAKQGRDR FQAILP+RGK+LN EKA++ IL NEE
Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478
Query: 479 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 538
I T+ +G G G DF++ Y K+IIMTDAD DGAHI+TLLLT FYRYMRPL++AG++
Sbjct: 479 IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 538
Query: 539 YIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWE 596
YIA PPLY++ GK +I Y ++DG+LED K +QRYKGLGEMN QLW+
Sbjct: 539 YIAQPPLYQIKHGK----QIEYVYSDGQLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWD 594
Query: 597 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
TTM+PE RTL++V I D A+ +LMGD+ PRR++IE+N ++
Sbjct: 595 TTMNPEHRTLLQVNIKDAIDADETFEMLMGDRVEPRRKFIEENAQY 640
>ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
Length = 640
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/635 (52%), Positives = 453/635 (71%), Gaps = 17/635 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
+NY + IQVLEGL+ VRKRPGMYIG+T GLHHL++E+VDN++DEAL+G+ I+V I
Sbjct: 3 SNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDI 62
Query: 70 NKDGSVSVADSGRGMPTGQH-AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
DGSVSV D GRG+PT H G ++ + TILHAGGKFG GGYK SGGLHGVG SVV
Sbjct: 63 KADGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGISVV 122
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST-I 187
NALSAW++V + RD V+ QR+E G PVT L + + K+GT V F+PD +IFS I
Sbjct: 123 NALSAWVDVTVWRDHKVHTQRYER-GIPVTELVS-SPSQEEKTGTRVNFLPDTEIFSQGI 180
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP 247
+F ++T+S RL+E A+L VK++ +D R ++P IE + YE G++++V Y+ +KETL
Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHK 240
Query: 248 -VIYMEGQDQDFQVEVALQYN-DGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
+IY+ G+ +EVA Q+ D +SDNIL F NN+RT DGG+H GLK+ +T+ +N+ A
Sbjct: 241 DIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N +KE + NL G + REGL+AV+S+ VPE +FEGQTK KLG+ R IV+S+V E
Sbjct: 301 RKRNKIKENEPNLAGENVREGLTAVISVKVPEP--EFEGQTKTKLGNTEVRGIVDSLVGE 358
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
L +L +N +VA ++ KA++A A EAAR+ARD R +K+ + L GKL +
Sbjct: 359 TLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVR--RKSVLESSPLPGKLADCSER 416
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +++E+Y+VEGDSAGGSAKQGRDR+FQAILPLRGK+LN EK A I KN EI +++
Sbjct: 417 DPERSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITA 476
Query: 486 IGAGV-GADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPP 544
+G G+ G DF+ + Y +I++MTDAD DGAHI+TLLLTFFYRY + L++ G+VYIA PP
Sbjct: 477 LGLGIKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPP 536
Query: 545 LYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWETTMDPE 602
LYK+ +GK +Y ++D EL+ EF A +QR+KGLGEM QLW+TTM+PE
Sbjct: 537 LYKLERGKNH----SYCYSDRELQQKIAEFPSNANYTIQRFKGLGEMMPQQLWDTTMNPE 592
Query: 603 TRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIE 637
TRTL RV I+D A+AE ++LMGD+ APRR++IE
Sbjct: 593 TRTLKRVEIEDAAKAEELFTILMGDRVAPRREFIE 627
>ref|YP_001086468.1| DNA gyrase subunit B [Clostridium difficile 630]
ref|ZP_01801532.1| hypothetical protein CdifQ_04004274 [Clostridium difficile
QCD-32g58]
ref|ZP_02728279.1| DNA gyrase subunit B [Clostridium difficile QCD-37x79]
ref|ZP_02747127.1| DNA gyrase subunit B [Clostridium difficile QCD-63q42]
ref|ZP_02757256.1| DNA gyrase subunit B [Clostridium difficile QCD-76w55]
ref|ZP_02764493.1| DNA gyrase subunit B [Clostridium difficile QCD-97b34]
emb|CAJ66819.1| DNA gyrase subunit B [Clostridium difficile 630]
Length = 633
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/635 (53%), Positives = 454/635 (71%), Gaps = 14/635 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y IQVLEGL+AVRKRPGMYIGST GLHHL++E+VDN++DEAL G+ DI V IN+
Sbjct: 5 YGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVDNSIDEALQGYCSDIYVSINE 64
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
DGSV V D+GRG+P H G T++ + T LHAGGKFG GGYK SGGLHGVG SVVNA
Sbjct: 65 DGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVSVVNA 124
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS W+ E+ +G +Y+Q +E G P + L+ VG + GT++ FMPD+ IF I+FK
Sbjct: 125 LSKWMVAEVYLNGKIYKQTYEKG-LPTSKLEVVGES--QDKGTMIQFMPDETIFDEIEFK 181
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTP-VI 249
+ T+ RL+E +FL K +K+ D R +EFHY G+ ++++YLN+ + + ++
Sbjct: 182 YETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDDIV 241
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y++ + D VE+A+QY DG+++NI SF NN+ T +GGSH +G K+A+TK +NDYA++
Sbjct: 242 YIDKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKRNK 301
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LKE D NL G D REGL+AV+S+ +PE QFEGQTK KLG+ R IV+S+ ++L
Sbjct: 302 FLKENDVNLLGEDIREGLTAVVSVKLPEP--QFEGQTKTKLGNSFMRGIVDSVTVDELGS 359
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN A +V KA++A+ AREAA+KAR+ +R +K+ + L GKL K+ K
Sbjct: 360 FLEENPSTARIIVDKALRAQRAREAAKKARELTR--RKSVLESTSLPGKLADCAEKDPSK 417
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
+E++LVEGDSAGGSAKQGRDR QAILPLRGK+LN EK+++ IL ++EI M+ G G
Sbjct: 418 SEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCG 477
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF+++ Y KIIIMTDAD DGAHI+TLLLTFF+RYMRPL++ G+VY A PPLYK++
Sbjct: 478 IGEDFDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVT 537
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWETTMDPETRTLIR 608
K K K Y ++D EL L E G+ + LQRYKGLGEMNA QLWETTM+PETRTL++
Sbjct: 538 KQK----KEHYVYSDKELNILLDEIGRNGVELQRYKGLGEMNAEQLWETTMNPETRTLLQ 593
Query: 609 VTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
VT++D A A+ S+LMGDK APR+++IE+N +F
Sbjct: 594 VTVEDAAIADEVFSMLMGDKVAPRKEFIEENARFV 628
>ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
Length = 645
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/648 (53%), Positives = 465/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 6 MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 65
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 66 CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 125
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD
Sbjct: 126 HGVGASVVNALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPD 182
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T ++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 183 PEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 241
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+
Sbjct: 242 RSKQPIHEEPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 300
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR
Sbjct: 301 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEART 358
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 359 ITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPG 416
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 417 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 476
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 477 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 536
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLW
Sbjct: 537 IYIAQPPLFKVQQGK----KIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 592
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 593 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 640
>ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987]
gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987]
Length = 640
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/648 (53%), Positives = 465/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPD 177
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T ++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 178 PEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLW
Sbjct: 532 IYIAQPPLFKIQQGK----KIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635
>gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
mycoides]
Length = 632
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/639 (53%), Positives = 460/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGET--DQTGTITRFKPDPEIFQETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>ref|YP_001393441.1| GyrB1 [Clostridium kluyveri DSM 555]
gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555]
Length = 637
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/635 (55%), Positives = 463/635 (72%), Gaps = 18/635 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y+++ IQ+LEGL+AVRKRPGMYIGST GLHHL++EIVDN++DEAL+G+ D I VVI++
Sbjct: 9 YDENQIQILEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDKIDVVIHE 68
Query: 72 DGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D SV+VAD+GRGMP G H + PTV+VI TILHAGGKFG GGYK SGGLHGVG+SVVNA
Sbjct: 69 DNSVTVADNGRGMPVGIHHKIKKPTVEVIMTILHAGGKFGGGGYKVSGGLHGVGASVVNA 128
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS EVE+ R+ V++Q F+ G K T L+ +G + + GT + F PD +IF +DF
Sbjct: 129 LSEICEVEVKREKHVWKQVFKRG-KVATGLEIIGDS--EEHGTKIYFKPDKEIFDEVDFD 185
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
++ +S+RL+E AFL K + ++L D R E FHYE G++ FV YLN +K+T+ I
Sbjct: 186 YDMLSQRLRELAFLNKGIAITLKDERSGKE--ELFHYEGGIKSFVTYLNRNKQTIHKEPI 243
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y+EG D+ VE+A QYN+G+S+NI SF NN+ T +GG+H G KSA+T+ NDYA+K N
Sbjct: 244 YVEGIKGDYSVEIAFQYNNGYSENIFSFANNIDTIEGGTHLAGFKSALTRVFNDYAKKFN 303
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
+LKE DKNL G D REG++AV+SI + + QFEGQTK KLG+ R IV++I++E L+
Sbjct: 304 ILKENDKNLSGEDIREGITAVISIKLVDP--QFEGQTKTKLGNSEVRGIVDNIMAESLSD 361
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL EN +VA ++ K++ A AREAARKAR+ +R +K + L GKL SK+ +
Sbjct: 362 FLQENPQVAKTIIDKSLVASRAREAARKARELTR--RKTVLENTSLPGKLADCSSKDPSE 419
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+YLVEGDSAGGSAKQGRDR+FQAILPLRGK++N EK ++ IL EEI M+ GAG
Sbjct: 420 CEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGAG 479
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G DF++ I Y+KIIIMTDAD DGAHI+TLLLTFFYRYMR LVE HVYIA PPLYK++
Sbjct: 480 IGKDFDISKIRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRELVEKCHVYIAQPPLYKVA 539
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFG---KGAILQRYKGLGEMNANQLWETTMDPETRTL 606
K K K YA++D EL+ L E G +QRYKGLGEM++ QLW+TTM+PETRTL
Sbjct: 540 KNK----KDYYAYSDKELDILLNEIGGKNSNVNIQRYKGLGEMDSEQLWDTTMNPETRTL 595
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVK 641
I+V ++D A+ ++LMGDK PR+ +I +N K
Sbjct: 596 IQVNVEDTIAADEIFTILMGDKVEPRKDFIIENAK 630
>gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar wratislaviensis]
Length = 632
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/640 (53%), Positives = 457/640 (71%), Gaps = 19/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+ I T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEAIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWET MDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETAMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 628
>ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames]
ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor']
ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne]
ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian str.
97-27]
ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), B subunit [Bacillus anthracis str. A2012]
ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
ref|ZP_02253985.1| DNA gyrase subunit B [Bacillus cereus AH187]
ref|ZP_02263525.1| DNA gyrase subunit B [Bacillus cereus AH820]
ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
ref|ZP_02542829.1| DNA gyrase subunit B [Bacillus cereus W]
ref|ZP_02593001.1| DNA gyrase subunit B [Bacillus cereus NVH0597-99]
ref|ZP_02596163.1| DNA gyrase subunit B [Bacillus cereus H3081.97]
ref|ZP_02602913.1| DNA gyrase subunit B [Bacillus cereus 03BB108]
ref|ZP_02611447.1| DNA gyrase subunit B [Bacillus anthracis Tsiankovskii-I]
ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B
gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames]
gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor']
gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne]
gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
[Bacillus thuringiensis serovar konkukian str. 97-27]
dbj|BAD44714.1| gyraseB [Bacillus anthracis]
gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
Length = 640
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/648 (53%), Positives = 465/648 (71%), Gaps = 19/648 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPD 177
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF T ++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 178 PEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA +V K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLW
Sbjct: 532 IYIAQPPLFKVQQGK----KIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 635
>ref|YP_001642902.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4]
gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4]
Length = 640
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/647 (53%), Positives = 462/647 (71%), Gaps = 19/647 (2%)
Query: 2 LTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGF 61
+ +K++ N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+
Sbjct: 1 MEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGY 60
Query: 62 GDDIKVVINKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGL 120
D+I V I +D S+ V D GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGL
Sbjct: 61 CDEINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 120
Query: 121 HGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPD 180
HGVG+SVVNALS LEV + RDG ++ Q++E G P LK +G ++GT+ F PD
Sbjct: 121 HGVGASVVNALSTELEVFVHRDGKIHYQKYERG-VPAADLKVIGET--DRTGTITRFKPD 177
Query: 181 DKIFS-TIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 239
+IF+ T +++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN
Sbjct: 178 SEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLN 236
Query: 240 EDKETL--TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297
K+ + PV Y++G QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+
Sbjct: 237 RSKQPIHEEPV-YVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 295
Query: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357
T+ +NDY RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR
Sbjct: 296 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEART 353
Query: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417
I ES+ SE FLLEN VA ++ K A AR AA+KAR+ +R +K+ + L G
Sbjct: 354 ITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTR--RKSALEVSSLPG 411
Query: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477
KL SK+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471
Query: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537
E+ T++ IG +G DF +E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G+
Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531
Query: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLW 595
+YIA PPL+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLW
Sbjct: 532 IYIAQPPLFKVQQGK----KIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLW 587
Query: 596 ETTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
ETTMDPE R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 588 ETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 634
>ref|ZP_01189203.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
gb|EAR79224.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
Length = 642
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/633 (52%), Positives = 452/633 (71%), Gaps = 15/633 (2%)
Query: 11 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVIN 70
NY + IQVLEGL+AVRKRPGMYIGST GLHHL++E+VDN++DEA+ G+ D I+V+I
Sbjct: 12 NYEAEHIQVLEGLEAVRKRPGMYIGSTGMDGLHHLVYEVVDNSIDEAMQGYCDLIEVIIK 71
Query: 71 KDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN 129
++V D+GRG+P H + P V+V+ T+LHAGGKFG GYK SGGLHGVG SVVN
Sbjct: 72 PGNIITVKDNGRGIPVDPHPKLKKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVN 131
Query: 130 ALSAWLEVEIT-RDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTID 188
ALS WLEVE+ RDG VY Q++ N G PV LK +G S +GT ++F PD++IF ++
Sbjct: 132 ALSKWLEVEVCWRDGKVYHQKY-NRGIPVYDLKVIGEC--SGTGTTISFKPDEEIFEDVN 188
Query: 189 FKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TP 247
FK+ +++RLKE AFL K V++ L D R ++ +E+ +E G+ FV+YLN++K L
Sbjct: 189 FKYKVLAQRLKELAFLNKGVRIILRDEREEEARQDEYCFEGGLVSFVKYLNKNKNPLFDE 248
Query: 248 VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARK 307
Y+E +D++ +VE+A+QYNDG+ D+I +F NN+ T++GG+H +G KSA+T+ +NDYAR
Sbjct: 249 PFYLEEKDENREVEIAIQYNDGYVDSIFTFANNINTREGGTHLSGFKSALTRTVNDYARS 308
Query: 308 TNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKL 367
+LKE D+NL G D REG++A++S+ + + QFEGQTK KLG+ R V+S +S L
Sbjct: 309 KGILKENDENLTGEDIREGITAIISVRLTDP--QFEGQTKTKLGNSEIRGFVDSALSSNL 366
Query: 368 TFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNA 427
FL EN ++ +V KA A AR+AA+KAR+ +R +K L GKL S++
Sbjct: 367 RTFLEENPKIGKIIVEKARSAARARKAAKKARELTR--RKGALSNTALPGKLADCSSRDT 424
Query: 428 KKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIG 487
+ E+Y+VEGDSAGGSAKQGRDRKFQAILPLRGK+LN EKA++ IL NEEI ++ IG
Sbjct: 425 ENTEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLNKILNNEEIRALITAIG 484
Query: 488 AGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYK 547
G+G +F++ Y KIIIMTDAD DGAHI+TLLLTFFYRYMRPL+E G +YIA PPLYK
Sbjct: 485 TGIGDEFDINKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGMIYIAQPPLYK 544
Query: 548 MSKGKGKTEKIAYAWTDGELEDLRREFGKGAI-LQRYKGLGEMNANQLWETTMDPETRTL 606
+ KG+ + Y + D L+ L + G+ I LQRYKGLGEMN +QLWETTM+PE R +
Sbjct: 545 VKKGR----REEYVYNDRGLQKLLNDIGRDKITLQRYKGLGEMNPDQLWETTMNPENRII 600
Query: 607 IRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 639
++V I+D A+ + LMGDK PRR++I+++
Sbjct: 601 LKVKIEDAVVADETFTTLMGDKVQPRREFIQEH 633
>gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar fukuokaensis]
Length = 632
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/640 (53%), Positives = 459/640 (71%), Gaps = 19/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVR+RPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRERPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFG--KGAILQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEM+ QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNDKELEKILAELPALPKPGIQRYKGLGEMSPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYV 628
>ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
Length = 638
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 334/637 (52%), Positives = 443/637 (69%), Gaps = 17/637 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y D I VLEGL+ VR RPGMYIGSTD GLHHL++E+VDN++DEAL+G D IKV I K
Sbjct: 7 YTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIKVTIKK 66
Query: 72 DGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D S+ V D G G+P H G T++ + T+LHAGGKF Y+ SGGLHGVG S VNA
Sbjct: 67 DNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVGVSCVNA 126
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS +L + RDG +Y QRFE G K VT L V + +GT + FMPDD IF T++F
Sbjct: 127 LSTYLIARVKRDGKMYEQRFEKG-KTVTGLTVVKENVRG-TGTTIEFMPDDTIFETLNFD 184
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-TPVI 249
N +++R +E AFL K VK+ +D R D E FHYE G++ FVEY+N+ K+ L V+
Sbjct: 185 KNVLAKRFREMAFLNKGVKIEFSDER--DGYKELFHYEGGIKSFVEYINKSKKPLDHEVM 242
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y+EG+ +VE+A+QY + +++ I+SF NN++T DGG+H G KSA+T+A+NDYAR N
Sbjct: 243 YIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYARNKN 302
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
+LKEKD NL G D REG++AV+S+ + + QFEGQTK KLG+ AR +V+S+V E L+F
Sbjct: 303 ILKEKDDNLSGDDVREGITAVVSVKL--NNPQFEGQTKGKLGNSEARTVVDSVVYEHLSF 360
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
+ EN ++ +++KA+ ++ AR AAR+ARD R KK+ D L GKL QS + +
Sbjct: 361 YFEENPKIVRTIIQKALASQKARLAARRARDLVR--KKSVLDNTTLPGKLADCQSSDIEY 418
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
NE++LVEGDSAGGSAK GRD KFQAILPLRGK+LN EKA + +L +EEI M+ G G
Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+G +F++ + Y KI+IMTDAD DGAHI+TLLLTF YR+M+PLVE GHVYIA PPLY +
Sbjct: 479 IGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGII 538
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGAIL--QRYKGLGEMNANQLWETTMDPETRTLI 607
KG + + Y +T+ ELE+ ++G+ + + QRYKGLGEMNA QLW+TTM+PE R LI
Sbjct: 539 KG---VKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILI 595
Query: 608 RVTID--DLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
+V ID D + VLMGD PRR++IE N +
Sbjct: 596 KVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVY 632
>gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar higo]
gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar kenyae]
gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar azorensis]
gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar zhaodongensis]
Length = 632
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 344/639 (53%), Positives = 457/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPDPEIFQETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+ F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK ++LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNSILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKIQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar pulsiensis]
Length = 632
Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust.
Identities = 343/639 (53%), Positives = 459/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPDPEIFQETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK ++LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNSILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNEKELEKILAELSAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
gb|EDN78706.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
Length = 645
Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust.
Identities = 351/637 (55%), Positives = 452/637 (70%), Gaps = 15/637 (2%)
Query: 12 YNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVINK 71
Y D IQ+LEGL+AVRKRPGMYIGST A GLHHL++EIVDNAVDEAL+G+ D I V IN
Sbjct: 12 YGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDTINVSINP 71
Query: 72 DGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNA 130
D SV+V D+GRG+P G H GIP V+V+FTILHAGGKFG GGYK SGGLHGVG+SVVNA
Sbjct: 72 DNSVTVVDNGRGIPVGLNHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVVNA 131
Query: 131 LSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFK 190
LS WLEVEI +G +Y+QR+E G K + +LK VG K+GT VTF+PD +IF F+
Sbjct: 132 LSVWLEVEIYNEGKIYKQRYERG-KTMYSLKVVGECDPDKTGTKVTFLPDGEIFEETVFE 190
Query: 191 FNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLT-PVI 249
++ + +RL+E AFL K +K+ L DLR ++ FHYE G+++FV YLN+ K L +I
Sbjct: 191 YDVLKQRLREMAFLTKGLKIILQDLREEEIREHTFHYEGGIKEFVTYLNKSKTPLYDQII 250
Query: 250 YMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYARKTN 309
Y EG+ VE+A+Q+ND +SDN FVNN+ T +GG+H G + A+TK N+YARK
Sbjct: 251 YCEGEKDGVVVEMAMQHNDSYSDNTYGFVNNITTPEGGTHIEGFRKALTKTFNEYARKNK 310
Query: 310 LLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSEKLTF 369
LLK+ + NL G D REGL+A++S+ + E QFEGQTK KLG+ AR V++IVS +L
Sbjct: 311 LLKDNEPNLSGDDIREGLTAIVSVKIGEP--QFEGQTKQKLGNSEARGAVDNIVSTQLEI 368
Query: 370 FLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKK 429
FL +N VA V K++ A+ AREAARKARD +R +K+ + L GKL KN +
Sbjct: 369 FLEQNPSVAKQTVEKSLMAQRAREAARKARDLTR--RKSALEGMSLPGKLADCSDKNPEN 426
Query: 430 NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAG 489
E+Y+VEGDSAGGSAK R R QAILPLRGK+LN EKA++ I N EI M+ G G
Sbjct: 427 CEIYIVEGDSAGGSAKTARQRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTG 486
Query: 490 VGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMS 549
+ DF++ + Y KIIIMTDAD DGAHI TLLLTF YR+M L+ G+VY+A PPLYK+
Sbjct: 487 IHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQPPLYKLE 546
Query: 550 KGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWETTMDPETRTLI 607
K K K+ YA++D EL ++ E G+ + +QRYKGLGEM+A+QLWETTMDPE R L+
Sbjct: 547 KNK----KVWYAYSDEELNEILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRVLL 602
Query: 608 RVTIDDLARAERRV--SVLMGDKAAPRRQWIEDNVKF 642
RVT+DD +E + + LMGDK PRR++IE+N +F
Sbjct: 603 RVTMDDETSSELDLTFTTLMGDKVEPRREFIEENARF 639
>gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
cereus]
Length = 632
Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust.
Identities = 343/639 (53%), Positives = 458/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIRVTDNGRGIPVGTQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPDPEIFQETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+ F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK ++LK+ D NL G D REGL+A++SI P + QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNSILKDADSNLTGEDVREGLTAIVSIKHP--NPQFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ +L N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKVLSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ D ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKIQQGK----KIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
gb|EDS73983.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
Length = 641
Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust.
Identities = 336/640 (52%), Positives = 457/640 (71%), Gaps = 17/640 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
++Y++ IQVLEGL+AVRKRPGMYIG+T GLHHL+WEIVDN++DEAL+G+ I+V++
Sbjct: 8 HSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYASHIRVIL 67
Query: 70 NKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
D V V D GRGMPTG HA GI TV+ IFT+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 68 KDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGLHGVGASVV 127
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS--T 186
NALS WLEV + RDG VY QRFENGG+PV LK VG + +GT+VTF D IF T
Sbjct: 128 NALSEWLEVNVHRDGHVYYQRFENGGQPVDKLKVVGDS--DITGTIVTFKADKLIFKEGT 185
Query: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL- 245
+ + ++T+++R++E AFL K +++SL D R + +HYE G++++V ++N++K +
Sbjct: 186 V-YDYDTLNQRIRELAFLNKGLRLSLEDQRNGINRKQVYHYEGGIKEYVSFINKNKTPIH 244
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
+IY+E QD +EVA+QYNDG+ NI SF NN+ T +GG+HE G + A+T+ +N+YA
Sbjct: 245 EEIIYVEDIQQDITIEVAMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRMALTRVINNYA 304
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
+ LLK+ D+ L G D REGL+A++S+ P+ Q+EGQTK KLG+ R I +I++
Sbjct: 305 KNKGLLKKDDETLSGDDVREGLTAIISVKHPDP--QYEGQTKTKLGNAEVRKIASNIIAT 362
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
L FLLEN + A +V KAI A AR AA+KAR+ +R +KN + L GKL SK
Sbjct: 363 SLDKFLLENPDTAKIIVDKAIIASRARMAAKKAREMTR--RKNPLEVSNLPGKLADCSSK 420
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ + E+++VEGDSAGGSAK GRDR+ QAILPLRGK+LN EK+++ IL N EI +M+
Sbjct: 421 DPSECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMITA 480
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
G G+G +FNL+ + Y KI+IMTDAD DG HI+ L+LTF YRY++PL+E G VY A PPL
Sbjct: 481 FGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGFVYAAQPPL 540
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGA--ILQRYKGLGEMNANQLWETTMDPET 603
Y + GK + Y ++D ELEDL+ + G GA +QRYKGLGEMNA+QLWETTMDP+
Sbjct: 541 YLLKHGKEE----HYCYSDEELEDLKTKIGSGAKYSIQRYKGLGEMNADQLWETTMDPQK 596
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFT 643
R L ++ +D+ A+ +LMG+K PRR++I++N K+
Sbjct: 597 RILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQENAKYV 636
>gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
Length = 632
Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust.
Identities = 342/639 (53%), Positives = 458/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + RDG ++ Q++E G P LK +G ++GT+ F PD +IF+ T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPAADLKVIGET--DRTGTITRFKPDAEIFTETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y++G QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA ++ K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar finitimus]
gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar poloniensis]
Length = 632
Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust.
Identities = 343/639 (53%), Positives = 459/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + R+G ++ Q++E G PV LK +G ++GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHREGKIHYQKYERG-IPVADLKVIGDT--DQTGTITRFKPDPEIFQETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEV+LQYN+G+++NI SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK ++LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNSILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA +V K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKIQQGK----KIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar vazensis]
gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
weihenstephanensis]
Length = 632
Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust.
Identities = 342/639 (53%), Positives = 457/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFS-TI 187
NALS LEV + RDG ++ Q++E G P LK +G ++GT+ F PD +IF+ T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-VPAADLKVIGET--DRTGTITRFKPDSEIFTETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y++G QVEVALQYN+G++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK N+LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNNILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA ++ K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF +E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
>gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
thuringiensis serovar roskildiensis]
Length = 632
Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust.
Identities = 343/639 (53%), Positives = 459/639 (71%), Gaps = 19/639 (2%)
Query: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69
N+Y++ IQVLEGL+AVRKRPGMYIGST GLHHL+WEIVDN++DEAL+G+ D+I V I
Sbjct: 2 NSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61
Query: 70 NKDGSVSVADSGRGMPTG-QHAMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 128
+D S+ V D+GRG+P G Q MG P V+VI T+LHAGGKFG GGYK SGGLHGVG+SVV
Sbjct: 62 EEDNSILVTDNGRGIPIGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121
Query: 129 NALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIF-STI 187
NALS LEV + RDG ++ Q++E G PV LK +G K+GT+ F PD +IF T
Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERG-IPVADLKVIGDT--DKTGTITRFKPDPEIFKETT 178
Query: 188 DFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETL-- 245
+++F+T++ R++E AFL +N+K+++ D R + +EFHYE G++ +VE+LN K+ +
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKR-EHKQKKEFHYEGGIKSYVEHLNRSKQPIHE 237
Query: 246 TPVIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAMNDYA 305
PV Y+EG QVEVALQYN+ ++++I SF NN+ T +GG+HE G K+A+T+ +NDY
Sbjct: 238 EPV-YVEGSKDGIQVEVALQYNERYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYG 296
Query: 306 RKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVESIVSE 365
RK ++LK+ D NL G D REGL+A++SI P QFEGQTK KLG+ AR I ES+ SE
Sbjct: 297 RKNSILKDADSNLTGEDVREGLTAIVSIKHPNP--QFEGQTKTKLGNSEARTITESVFSE 354
Query: 366 KLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSK 425
FLLEN VA ++ K A AR AA+KAR+ +R +K+ + L GKL SK
Sbjct: 355 AFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTR--RKSALEVSSLPGKLADCSSK 412
Query: 426 NAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYT 485
+ +E+Y+VEGDSAGGSAKQGRDR FQAILPL+GK++N EKA++ IL N+E+ T++
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472
Query: 486 IGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPL 545
IG +G DF++E Y K+IIMTDAD DGAHI+TLLLTFFYRYMR ++E G++YIA PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 532
Query: 546 YKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI--LQRYKGLGEMNANQLWETTMDPET 603
+K+ +GK KI YA+ + ELE + E +QRYKGLGEMN QLWETTMDPE
Sbjct: 533 FKVQQGK----KIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEV 588
Query: 604 RTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKF 642
R+L++V++ D A+ +LMGDK PRR +I++N K+
Sbjct: 589 RSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.315 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 2,857,329,833
Number of extensions: 127460225
Number of successful extensions: 315014
Number of sequences better than 10.0: 5903
Number of HSP's gapped: 289069
Number of HSP's successfully gapped: 6513
Length of query: 650
Length of database: 2,222,278,849
Length adjustment: 140
Effective length of query: 510
Effective length of database: 1,310,164,289
Effective search space: 668183787390
Effective search space used: 668183787390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 82 (36.2 bits)