NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs9826151          
refSNP ID: rs9826151
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NM_002577.3:c.188-2572T>A
NT_029928.12:g.1145960T>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13658860 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9826151 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13658860BCM_SSAHASNP|chr3.NT_029928.11_1145960fwd/BA/Ttctgatgaaacagtgtgcgctctgcactgaaactactgctctgtttctaagtgtccccca11/05/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9826151|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=119
 AAGTGTtcag caaacttgga atagaagaga atgcccttta gcctcataaa ggacatcttt
 taaaaaccta ccattggcat taaacttaag ggtaaaaaga atgacagttt ttcctcttag
 atcaggaaaa ataaaatttc tcttcatcca cttttattca acaatgtact gaagggtcta
 gctaatgtag taaggcaaaa aaaaattttt tttaagaaaa cgaataaaag gaatccagat
 tggaaagaag taaacttgat tttattcacc gacaacatga ttgaattttt gtagcaaaat
 tgtatattta caaaaatact agtggaagta agtgtaataa ggtttcagga tataagatta
 gtattcaaga aacaactgtg tttctttatg gctgcaatga atgattaaaa agggaattTT
 AAAACTGCCA TTTGCAATAG TATCAAAACC AGGAAATACC GAGGCAGAAA TCTGATGAAA
 CAGTGTGCGC TCTGCACTGA
 W
 AACTACtgct ctgtttctaa gtgtccccca gagttcatgt gttagaaact gaagccccag
 taagagagtg ttgagacatg ggaccttcaa gaggcgacgc gagtgctcac ggatggactc
 atgtctttat tgtggatgcg agttgcttat aaaagccagt ttggccctct cctgctctct
 ttcttgcaat gtgatgcctt cggctacgtt atgacacaac aagaaggacc ctcaccaggt
 gtggcttctt ggtccttgac ctggaggact ttccagcctc caggagaact gtgagccaaa
 tgaaCtttta tttttttgag gcagtctcac gctgtgactc aggctgggga gtgcagtgac
 acaatctcgg ctcactgcag cctccacctc ctgggttcaa gcaattcttg tgccGctata
 ctcggctgaa gtttgcattt tagatacagt gttttgccat gttggccaga tgggtcttga
 actcctggcc ttatgtgatc

  GeneView back to top
GeneView via analysis of contig annotation: PAK2 p21 protein (Cdc42/Rac)-activated kinase 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_029928->NM_002577
function
HuRefNW_001838889->NM_002577
function
CeleraNW_921873->NM_002577
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_029928->NM_002577->NP_0025681145960forwardintron
HuRefNW_001838889->NM_002577->NP_002568854373forwardintron
CeleraNW_921873->NM_002577->NP_002568788813forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9826151 maps exactly once on NCBI human chromosome 3
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
3NW_001838889.1854373193822622plusTalt_assembly_8HuRefHuRefview500
3NW_921873.1788813195107333plusTalt_assembly_1CeleraCeleraview500
3NT_029928.121145960198010623plusTref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_029928
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .