Gene name

ligD

Primary source

PseudoCap:PA2138

Locus tag

PA2138

Gene type

protein coding

RefSeq status

PROVISIONAL

Organism

Pseudomonas aeruginosa PAO1 (strain: PAO1)

Lineage

Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

Also known as

ligD

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Related Articles in PubMed

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

Names

ATP-dependent DNA ligase

NP_250828.1

catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA

EC 6.5.1.1

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

mRNA and Protein(s)

1. NP_250828.1 ATP-dependent DNA ligase [Pseudomonas aeruginosa PAO1]

   UniProtKB/TrEMBL

   Q9I1X7

   Conserved Domains (4) summary

   cd04862
   Location:566–792
   Blast Score:840

   PaeLigD_Pol_like; PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non...

   PRK05972
   Location:4–840
   Blast Score:3218

   ligD; ATP-dependent DNA ligase; Reviewed

   pfam04679
   Location:418–484
   Blast Score:145

   DNA_ligase_A_C; ATP dependent DNA ligase C terminal region

   cl00624
   Location:229–399
   Blast Score:238

   DNA_ligase_A_M; ATP dependent DNA ligase domain