Uses of Class
ij.ImagePlus

Packages that use ImagePlus

ij
ij.gui
ij.io
ij.macro
ij.measure
ij.plugin
ij.plugin.filter
ij.plugin.frame
ij.process

Uses of ImagePlus in ij

Subclasses of ImagePlus in ij

class

CompositeImage

Methods in ij that return ImagePlus

static ImagePlus	WindowManager.getCurrentImage() Returns a reference to the active image or null if there isn't one.
static ImagePlus	WindowManager.getImage(int imageID) For IDs less than zero, returns the ImagePlus with the specified ID.
static ImagePlus	WindowManager.getImage(java.lang.String title) Returns the first image that has the specified title or null if it is not found.
static ImagePlus	WindowManager.getTempCurrentImage() Returns the temporary current image for this thread, or null.
ImagePlus	ImagePlus.createImagePlus() Returns a new ImagePlus with this ImagePlus' attributes (e.g.
static ImagePlus	ImagePlus.getClipboard() Returns the internal clipboard or null if the internal clipboard is empty.
static ImagePlus	IJ.getImage() Returns a reference to the active image.
static ImagePlus	IJ.openImage(java.lang.String path) Open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image and returns an ImagePlus object if successful.
static ImagePlus	IJ.openImage() Opens an image using a file open dialog and returns it as an ImagePlus object.
static ImagePlus	IJ.createImage(java.lang.String title, java.lang.String type, int width, int height, int depth) Creates a new imagePlus.

Methods in ij with parameters of type ImagePlus

static void	WindowManager.setTempCurrentImage(ImagePlus img) Makes the specified image temporarily the active image for this thread.
static void	WindowManager.setTempCurrentImage(java.lang.Thread thread, ImagePlus img) Sets a temporary image for the specified thread.
static void	Undo.setup(int what, ImagePlus imp)
void	ImagePlus.copyScale(ImagePlus imp) Copies the calibration of the specified image to this image.
void	ImageListener.imageOpened(ImagePlus imp)
void	ImageListener.imageClosed(ImagePlus imp)
void	ImageListener.imageUpdated(ImagePlus imp)
static java.lang.Object	IJ.runPlugIn(ImagePlus imp, java.lang.String className, java.lang.String arg) Runs the specified plugin using the specified image.
static void	IJ.run(ImagePlus imp, java.lang.String command, java.lang.String options) Runs an ImageJ command using the specified image and options.
static void	IJ.showTime(ImagePlus imp, long start, java.lang.String str)
static void	IJ.showTime(ImagePlus imp, long start, java.lang.String str, int nslices)
static int	IJ.setupDialog(ImagePlus imp, int flags) Displays a "Process all images?" dialog.
static void	IJ.save(ImagePlus imp, java.lang.String path) Saves the specified image, lookup table or selection to the specified file path.
static void	IJ.saveAs(ImagePlus imp, java.lang.String format, java.lang.String path)
void	CompositeImage.copyLuts(ImagePlus imp) Copies the LUTs and display mode of 'imp' to this image.

Constructors in ij with parameters of type ImagePlus

Executer(java.lang.String cmd, ImagePlus ignored)
Create an Executer that runs the specified menu command in a separate thread using the active image image.

CompositeImage(ImagePlus imp)

CompositeImage(ImagePlus imp, int mode)

Uses of ImagePlus in ij.gui

Fields in ij.gui declared as ImagePlus

protected ImagePlus	Roi.imp
protected ImagePlus	Roi.clipboard
protected ImagePlus	ProfilePlot.imp
protected ImagePlus	ImageWindow.imp
protected ImagePlus	ImageCanvas.imp

Methods in ij.gui that return ImagePlus

ImagePlus	Plot.getImagePlus() Returns the plot as an ImagePlus.
static ImagePlus	NewImage.createByteImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createRGBImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createShortImage(java.lang.String title, int width, int height, int slices, int options) Creates an unsigned short image.
static ImagePlus	NewImage.createUnsignedShortImage(java.lang.String title, int width, int height, int slices, int options) Obsolete.
static ImagePlus	NewImage.createFloatImage(java.lang.String title, int width, int height, int slices, int options)
static ImagePlus	NewImage.createImage(java.lang.String title, int width, int height, int nSlices, int bitDepth, int options)
ImagePlus	ImageWindow.getImagePlus()

Methods in ij.gui with parameters of type ImagePlus

void	Roi.setImage(ImagePlus imp)
void	Roi.startPaste(ImagePlus clipboard)
void	ImageWindow.updateImage(ImagePlus imp)
void	HistogramWindow.showHistogram(ImagePlus imp, int bins) Draws the histogram using the specified title and number of bins.
void	HistogramWindow.showHistogram(ImagePlus imp, int bins, double histMin, double histMax) Draws the histogram using the specified title, number of bins and histogram range.
void	HistogramWindow.showHistogram(ImagePlus imp, ImageStatistics stats) Draws the histogram using the specified title and ImageStatistics.

Constructors in ij.gui with parameters of type ImagePlus

TextRoi(int x, int y, ImagePlus imp)

StackWindow(ImagePlus imp)

StackWindow(ImagePlus imp, ImageCanvas ic)

Roi(int sx, int sy, ImagePlus imp)
Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.

Roi(int x, int y, int width, int height, ImagePlus imp)
Obsolete

ProfilePlot(ImagePlus imp)

ProfilePlot(ImagePlus imp, boolean averageHorizontally)

PolygonRoi(int[] xPoints, int[] yPoints, int nPoints, ImagePlus imp, int type)
Obsolete

PolygonRoi(int sx, int sy, ImagePlus imp)
Starts the process of creating a new user-generated polygon or polyline ROI.

PointRoi(int sx, int sy, ImagePlus imp)
Creates a new PointRoi using the specified screen coordinates.

OvalRoi(int x, int y, ImagePlus imp)
Starts the process of creating a user-defined OvalRoi.

OvalRoi(int x, int y, int width, int height, ImagePlus imp)
Obsolete

Line(int sx, int sy, ImagePlus imp)
Starts the process of creating a new user-generated straight line selection.

Line(int ox1, int oy1, int ox2, int oy2, ImagePlus imp)
Obsolete

ImageWindow(ImagePlus imp)

ImageWindow(ImagePlus imp, ImageCanvas ic)

ImageCanvas(ImagePlus imp)

HistogramWindow(ImagePlus imp)
Displays a histogram using the title "Histogram of ImageName".

HistogramWindow(java.lang.String title, ImagePlus imp, int bins)
Displays a histogram using the specified title and number of bins.

HistogramWindow(java.lang.String title, ImagePlus imp, int bins, double histMin, double histMax)
Displays a histogram using the specified title, number of bins and histogram range.

HistogramWindow(java.lang.String title, ImagePlus imp, int bins, double histMin, double histMax, int yMax)
Displays a histogram using the specified title, number of bins, histogram range and yMax.

HistogramWindow(java.lang.String title, ImagePlus imp, ImageStatistics stats)
Displays a histogram using the specified title and ImageStatistics.

FreehandRoi(int sx, int sy, ImagePlus imp)

Uses of ImagePlus in ij.io

Methods in ij.io that return ImagePlus

ImagePlus	Opener.openImage(java.lang.String directory, java.lang.String name) Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg image.
ImagePlus	Opener.openImage(java.lang.String path) Attempts to open the specified file as a tiff, bmp, dicom, fits, pgm, gif or jpeg.
ImagePlus	Opener.openURL(java.lang.String url) Attempts to open the specified url as a tiff, zip compressed tiff, dicom, gif or jpeg.
ImagePlus	Opener.openWithHandleExtraFileTypes(java.lang.String path, int[] fileType)
ImagePlus	Opener.openTiffStack(FileInfo[] info) Attemps to open a tiff file as a stack.
ImagePlus	Opener.openTiff(java.lang.String directory, java.lang.String name) Attempts to open the specified file as a tiff.
ImagePlus	Opener.openTiff(java.io.InputStream in, java.lang.String name) Attempts to open the specified inputStream as a TIFF, returning an ImagePlus object if successful.
ImagePlus	Opener.openZip(java.lang.String path) Opens a single TIFF or DICOM contained in a ZIP archive, or a ZIPed collection of ".roi" files created by the ROI manager.
ImagePlus	FileOpener.open(boolean show) Opens the image.

Methods in ij.io with parameters of type ImagePlus

static void	Opener.convertGrayJpegTo8Bits(ImagePlus imp) If this image is grayscale, convert it to 8-bits.
static boolean	FileSaver.okForGif(ImagePlus imp)
static boolean	FileSaver.okForJpeg(ImagePlus imp) Always returns true.
static boolean	FileSaver.okForFits(ImagePlus imp)
void	FileOpener.revertToSaved(ImagePlus imp) Restores original disk or network version of image.

Constructors in ij.io with parameters of type ImagePlus

FileSaver(ImagePlus imp)
Constructs a FileSaver from an ImagePlus.

Uses of ImagePlus in ij.macro

Methods in ij.macro that return ImagePlus

static ImagePlus	Interpreter.getBatchModeImage(int id)
static ImagePlus	Interpreter.getLastBatchModeImage()

Methods in ij.macro with parameters of type ImagePlus

static void	Interpreter.addBatchModeImage(ImagePlus imp)
static void	Interpreter.removeBatchModeImage(ImagePlus imp)

Uses of ImagePlus in ij.measure

Methods in ij.measure with parameters of type ImagePlus

void	Calibration.setImage(ImagePlus imp) Disables the density calibation if the specified image has a differenent bit depth.

Constructors in ij.measure with parameters of type ImagePlus

Calibration(ImagePlus imp)
Constructs a new Calibration object using the default values.

Uses of ImagePlus in ij.plugin

Subclasses of ImagePlus in ij.plugin

class	BMP_Reader This plugin reads BMP files.
class	ColorPicker Implements the Image/Color/Color Picker command.
class	DICOM This plugin decodes DICOM files.
class	FITS_Reader Opens and displays FITS images.
class	LutLoader Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
class	PGM_Reader This plugin opens PxM format images.

Methods in ij.plugin that return ImagePlus

ImagePlus	ZProjector.getProjection() Retrieve results of most recent projection operation.
ImagePlus	Slicer.reslice(ImagePlus imp)
ImagePlus	RGBStackMerge.createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)
ImagePlus	AVI_Reader.getImagePlus() Returns the ImagePlus opened by run().

Methods in ij.plugin with parameters of type ImagePlus

void	ZProjector.setImage(ImagePlus imp) Explicitly set image to be projected.
ImageProcessor	Straightener.straighten(ImagePlus imp, Roi roi, int width)
ImageStack	Straightener.straightenStack(ImagePlus imp, Roi roi, int width)
ImageProcessor	Straightener.straightenLine(ImagePlus imp, int width)
ImageProcessor	Straightener.rotateLine(ImagePlus imp, int width)
void	StackEditor.convertStackToImages(ImagePlus imp)
ImagePlus	Slicer.reslice(ImagePlus imp)
void	PNG_Writer.writeImage(ImagePlus imp, java.lang.String path, int transparentIndex)
void	MontageMaker.makeMontage(ImagePlus imp)
void	MontageMaker.makeMontage(ImagePlus imp, int columns, int rows, double scale, int first, int last, int inc, int borderWidth, boolean labels)
void	ImageCalculator.calculate(java.lang.String params, ImagePlus img1, ImagePlus img2)
void	HyperStackReducer.reduce(ImagePlus imp2)
void	HyperStackConverter.shuffle(ImagePlus imp, int order) Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.
static java.lang.String[]	FITS_Writer.getHeader(ImagePlus img) Extracts the original FITS header from the Properties object of the ImagePlus image (or from the current slice label in the case of an ImageStack) and returns it as an array of String objects representing each card.
void	FFTMath.doMath(ImagePlus imp1, ImagePlus imp2)
void	ContrastEnhancer.stretchHistogram(ImagePlus imp, double saturated)
void	ContrastEnhancer.equalize(ImagePlus imp)

Constructors in ij.plugin with parameters of type ImagePlus

ZProjector(ImagePlus imp)
Construction of ZProjector with image to be projected.

HyperStackReducer(ImagePlus imp)
Constructs a HyperStackReducer using the specified source image.

Uses of ImagePlus in ij.plugin.filter

Fields in ij.plugin.filter declared as ImagePlus

protected ImagePlus

ParticleAnalyzer.imp

Methods in ij.plugin.filter that return ImagePlus

ImagePlus	Projector.doProjections(ImagePlus imp)
ImagePlus	ParticleAnalyzer.getOutputImage() Returns the "Outlines", "Masks", "Elipses" or "Count Masks" image, or null if "Nothing" is selected in the "Show:" menu.
ImagePlus	Duplicater.duplicateStack(ImagePlus imp, java.lang.String newTitle)
static ImagePlus	Analyzer.getRedirectImage(ImagePlus currentImage) Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

Methods in ij.plugin.filter with parameters of type ImagePlus

int	ZAxisProfiler.setup(java.lang.String arg, ImagePlus imp)
int	XYWriter.setup(java.lang.String arg, ImagePlus imp)
void	XYWriter.saveXYCoordinates(ImagePlus imp)
int	Writer.setup(java.lang.String arg, ImagePlus imp)
int	UnsharpMask.setup(java.lang.String arg, ImagePlus imp) Method to return types supported
int	UnsharpMask.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr) Ask the user for the parameters
int	Translator.setup(java.lang.String arg, ImagePlus imp)
int	Translator.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	Transformer.setup(java.lang.String arg, ImagePlus imp)
int	ThresholdToSelection.setup(java.lang.String arg, ImagePlus imp)
int	Shadows.setup(java.lang.String arg, ImagePlus imp)
int	ScaleDialog.setup(java.lang.String arg, ImagePlus imp)
int	SaltAndPepper.setup(java.lang.String arg, ImagePlus imp)
int	Rotator.setup(java.lang.String arg, ImagePlus imp)
int	Rotator.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	RoiWriter.setup(java.lang.String arg, ImagePlus imp)
void	RoiWriter.saveRoi(ImagePlus imp)
int	RGBStackSplitter.setup(java.lang.String arg, ImagePlus imp)
void	RGBStackSplitter.split(ImagePlus imp) Splits the specified RGB image or stack into three 8-bit grayscale images or stacks.
int	Resizer.setup(java.lang.String arg, ImagePlus imp)
int	RankFilters.setup(java.lang.String arg, ImagePlus imp) Setup of the PlugInFilter.
int	RankFilters.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	Projector.setup(java.lang.String arg, ImagePlus imp)
void	Projector.doRGBProjections(ImagePlus imp)
ImagePlus	Projector.doProjections(ImagePlus imp)
int	Profiler.setup(java.lang.String arg, ImagePlus imp)
int	Printer.setup(java.lang.String arg, ImagePlus imp)
int	PlugInFilter.setup(java.lang.String arg, ImagePlus imp) This method is called once when the filter is loaded.
int	ParticleAnalyzer.setup(java.lang.String arg, ImagePlus imp)
boolean	ParticleAnalyzer.analyze(ImagePlus imp) Performs particle analysis on the specified image.
boolean	ParticleAnalyzer.analyze(ImagePlus imp, ImageProcessor ip) Performs particle analysis on the specified ImagePlus and ImageProcessor.
int	MaximumFinder.setup(java.lang.String arg, ImagePlus imp) Method to return types supported
int	MaximumFinder.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	LutViewer.setup(java.lang.String arg, ImagePlus imp)
int	LutApplier.setup(java.lang.String arg, ImagePlus imp)
int	LineGraphAnalyzer.setup(java.lang.String arg, ImagePlus imp)
void	LineGraphAnalyzer.analyze(ImagePlus imp) Uses ImageJ's particle analyzer to extract a set of coordinate pairs from a digitized line graph.
int	Info.setup(java.lang.String arg, ImagePlus imp)
java.lang.String	Info.getImageInfo(ImagePlus imp, ImageProcessor ip)
int	ImageProperties.setup(java.lang.String arg, ImagePlus imp)
int	ImageMath.setup(java.lang.String arg, ImagePlus imp)
int	GaussianBlur.setup(java.lang.String arg, ImagePlus imp) Method to return types supported
int	GaussianBlur.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr) Ask the user for the parameters
int	FractalBoxCounter.setup(java.lang.String arg, ImagePlus imp)
int	Filters.setup(java.lang.String arg, ImagePlus imp)
int	Filler.setup(java.lang.String arg, ImagePlus imp)
void	Filler.drawLabel(ImagePlus imp, ImageProcessor ip, int count, java.awt.Rectangle r)
int	FFTFilter.setup(java.lang.String arg, ImagePlus imp)
int	FFTCustomFilter.setup(java.lang.String arg, ImagePlus imp)
int	ExtendedPlugInFilter.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr) This method is called after setup(arg, imp) unless the DONE flag has been set.
int	EDM.setup(java.lang.String arg, ImagePlus imp)
int	Duplicater.setup(java.lang.String arg, ImagePlus imp)
void	Duplicater.duplicate(ImagePlus imp)
ImagePlus	Duplicater.duplicateStack(ImagePlus imp, java.lang.String newTitle)
int	Convolver.setup(java.lang.String arg, ImagePlus imp)
int	Convolver.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	Calibrator.setup(java.lang.String arg, ImagePlus imp)
boolean	Calibrator.showDialog(ImagePlus imp)
void	Calibrator.calibrate(ImagePlus imp)
int	CalibrationBar.setup(java.lang.String arg, ImagePlus imp)
void	CalibrationBar.drawColorBar(ImagePlus imp, int x, int y)
int	Binary.setup(java.lang.String arg, ImagePlus imp)
int	Benchmark.setup(java.lang.String arg, ImagePlus imp)
int	BackgroundSubtracter.setup(java.lang.String arg, ImagePlus imp)
int	BackgroundSubtracter.showDialog(ImagePlus imp, java.lang.String command, PlugInFilterRunner pfr)
int	AVI_Writer.setup(java.lang.String arg, ImagePlus imp)
void	AVI_Writer.writeImage(ImagePlus imp, java.lang.String path, int compression, int jpegQuality) Writes an ImagePlus (stack) as AVI file.
int	Analyzer.setup(java.lang.String arg, ImagePlus imp)
static ImagePlus	Analyzer.getRedirectImage(ImagePlus currentImage) Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

Constructors in ij.plugin.filter with parameters of type ImagePlus

Analyzer(ImagePlus imp)
Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.

Analyzer(ImagePlus imp, int measurements, ResultsTable rt)
Construct a new Analyzer using an ImagePlus object and private measurement options and results table.

Uses of ImagePlus in ij.plugin.frame

Methods in ij.plugin.frame with parameters of type ImagePlus

void	RoiManager.add(ImagePlus imp, Roi roi, int n) Adds the specified ROI to the list.

Uses of ImagePlus in ij.process

Constructors in ij.process with parameters of type ImagePlus

StackStatistics(ImagePlus imp)

StackStatistics(ImagePlus imp, int nBins, double histMin, double histMax)

StackConverter(ImagePlus imp)

ImageConverter(ImagePlus imp)
Constructs an ImageConverter based on an ImagePlus object.