Reference SNP(refSNP) Cluster Report: rs334535

Reference SNP(refSNP) Cluster Report: rs334535

refSNP ID: rs334535
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	79/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names
NM_002093.2:c.88+19890G>A
NT_005612.15:g.26287450C>T

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss1928550 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs334535 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss426859	KWOK\|OVLP-000621-316493	fwd/T	A/G	tataaaacagtggctgtgagagatgggtaa	aagtgtagttgaaatccatattgcaaaatc	06/30/00	10/10/03	79	Genomic	99 %
ss949567	KWOK\|OVLP-000804-394882	fwd/T	A/G	tataaaacagtggctgtgagagatgggtaa	aagtgtagttgaaatccatattgcaaaatc	09/01/00	10/10/03	86	Genomic	99 %
ss1928550	KWOK\|OVLP-000925-681802	fwd/T	A/G	tataaaacagtggctgtgagagatgggtaa	aagtgtagttgaaatccatattgcaaaatc	10/06/00	10/25/06	87	Genomic	99 %
ss3710354	SC_JCM\|AC024217.9_81315	fwd/T	A/G	tataaaacagtggctgtgagagatgggtaa	aagtgtagttgaaatccatattgcaaaatc	09/25/01	10/10/03	100	Genomic	unknown
ss10085134	BCM_SSAHASNP\|chr3.NT_005612.13_26191458	rev/B	C/T	gattttgcaatatggatttcaactacactt	ttacccatctctcacagccactgttttata	06/27/03	10/10/03	116	Genomic	unknown
ss14171191	BCM_SSAHASNP\|chr3.NT_005612.14_26287450	rev/B	C/T	gattttgcaatatggatttcaactacactt	ttacccatctctcacagccactgttttata	11/05/03	11/22/03	119	Genomic	unknown
ss23255219	PERLEGEN\|afd2407025	rev/B	C/T	gattttgcaatatggatttcaactacactt	ttacccatctctcacagccactgttttata	08/10/04	09/13/04	123	Genomic	unknown
ss66080208	AFFY\|SNP_A-1912020	fwd/T	A/G	tgtgagagatgggtaa	aagtgtagttgaaatc	10/27/06	08/14/07	127	Genomic	unknown
ss68873419	PERLEGEN\|PGP02407025	rev/B	C/T	gattttgcaatatggatttcaactacactt	ttacccatctctcacagccactgttttata	01/30/07	08/14/07	127	Genomic	unknown
ss75128109	ILLUMINA\|ILMN_Human_1M_rs334535	fwd/T	A/G	tataaaacagtggctgtgagagatgggtaa	aagtgtagttgaaatccatattgcaaaatc	08/28/07	08/29/07	129	Genomic	unknown
ss76020493	AFFY\|AFFY_6_1M_SNP_A-1912020	fwd/T	A/G	tgtgagagatgggtaa	aagtgtagttgaaatc	08/28/07	08/29/07	129	Genomic	unknown
ss81374749	HGSV\|Cor18507_SNV_20070510.chr3_121274994	rev/B	C/T	gattttgcaatatggatttcaactacactt	ttacccatctctcacagccactgttttata	11/26/07	11/29/07	130	Genomic	unknown

Fasta sequence (Legend)

 ATTTGGAGAG GGAATAAGAT AATTGCCCGA AATTGGAAGA ATTAAGGTTT TTTAGGGTAC
 GGCTTAGGAA CTTCTACTTT TTGTAGTGTT ACTTATGGAG GAGAAAGTAA TTGTCAGTCA
 TATATAAGTA CAGtttattt tattttaaaa taaaaatttt aaGAGCAAAT ACCTTGCTTT
 TAAAACTGAT CTGGCTAGCT ATAAAACAGT GGCTGTGAGA GATGGGTAA
 R
 AAGTGTAGTT GAAATCCATA TTGCAAAATC AGTTTTGAGC CTGAGCTCCT ATCCttttct
 tttcttcttt gagatggggt cttgctctct tgcccaggct gaagtgctgt ggtgtggttg
 tggctcactg cagcctacct cctgggctca ggtgatactc ttgcatcagc ctttcaatta
 gctaggacta caggcccgca ccaccatgcc aggctttttt tttttttttt tttttttaat
 tttttttgta gagatgaggt ctccctatgt tgtccaggct gggcttaagc aattcttctg
 ccttgtcctc tcagagtgca gggattatag atgtgagcca cagagctcag tcAGGATCAC
 tttaacagat gaaactgaat cttagagaag ttaagtaact cttgccaagg tttcatagcc
 agcaggtggc agagcctgga ttccaaccca ggtaatttag tctagagctc ttattcttaa
 ctactttact gtcctAAGAG TATGCGAATG TACAGAAATG GAGCCTTGCT ACCTCTGGTA
 ACTTGAAGGC ACCAATTTTG CGTTCAGTTA ACATATCATA GTTTGATCCA AGGCAAGAAC
 AGAAGTGTTA ACACTTCACC TGCCTCTGTC CTT

GeneView

GeneView via analysis of contig annotation: GSK3B glycogen synthase kinase 3 beta

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_005612->NM_002093

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_005612->NM_002093->NP_002084	26287450	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs334535 maps exactly once on NCBI human chromosome 3

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
3	NW_001838881.2	501686	117168388	plus	G	alt_assembly_8	HuRef	HuRef	view	229
3	NW_921807.1	26387731	118202061	minus	C	alt_assembly_1	Celera	Celera	view	229
3	NT_005612.15	26287450	121274994	minus	C	ref_assembly	reference	reference	view	229

NCBI Resource Links

Submitter-Referenced
GenBank
NT_005612 AC021885 AC024217.9

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G	N
ss1928550	HapMap-CEU	European	120	IG	0.067	0.367	0.567	1.000	0.250	0.750

	HapMap-HCB	Asian	90	IG		0.133	0.867	0.655	0.067	0.933

	HapMap-JPT	Asian	88	IG		0.068	0.932	1.000	0.034	0.966

	HapMap-YRI	Sub-Saharan African	120	IG	0.383	0.450	0.167	0.752	0.608	0.392

	CHMJ	Asian	74	IG					0.108	0.865	0.027

ss23255219	AFD_EUR_PANEL	European	48	IG	0.083	0.375	0.542	1.000	0.271	0.729

	AFD_AFR_PANEL	African American	46	IG	0.174	0.609	0.217	0.294	0.478	0.522

	AFD_CHN_PANEL	Asian	48	IG		0.125	0.875	0.752	0.062	0.938

ss66080208	HapMap-CEU	European	118	GF	0.068	0.424	0.508		0.280	0.720

	HapMap-HCB	Asian	90	GF		0.267	0.733		0.133	0.867

	HapMap-JPT	Asian	90	GF	0.022	0.244	0.733		0.144	0.856

	HapMap-YRI	Sub-Saharan African	120	GF	0.350	0.433	0.217		0.567	0.433

ss68873419	HapMap-CEU	European	120	GF	0.067	0.367	0.567		0.250	0.750

	HapMap-HCB	Asian	90	GF		0.133	0.867		0.067	0.933

	HapMap-JPT	Asian	90	GF		0.067	0.933		0.033	0.967

	HapMap-YRI	Sub-Saharan African	120	GF	0.383	0.450	0.167		0.608	0.392

Concordant Genotype	Total Sample	A/A	A/G	G/G
ss1928550	234	35	73	125
ss23255219	69
ss66080208	233	35	73	125
ss68873419	234

RefSNP Genotype Summary	Total Individual	A/A	A/G	G/G
rs334535	332	35	73	126

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
242	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
242	ss23255219	C/C	PERLEGEN	AFD_EUR_PANEL	NA10854		71_IND_CHR_3
242	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	chr3-HapMap-CEU
242	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	chr3-HapMap-CEU
363	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
363	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	chr3-HapMap-CEU
363	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	chr3-HapMap-CEU
366	ss1928550	A/G	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
366	ss66080208	G/G	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	chr3-HapMap-CEU
366	ss68873419	C/T	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	chr3-HapMap-CEU
399	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
399	ss23255219	C/C	PERLEGEN	AFD_EUR_PANEL	NA10830		71_IND_CHR_3
399	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	chr3-HapMap-CEU
399	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	chr3-HapMap-CEU
467	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
467	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	chr3-HapMap-CEU
467	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	chr3-HapMap-CEU
538	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA12753	CEPH1447.02	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
538	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA12753	CEPH1447.02	chr3-HapMap-CEU
538	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA12753	CEPH1447.02	chr3-HapMap-CEU
577	ss1928550	A/G	CSHL-HAPMAP	HapMap-CEU	NA12813	CEPH1454.13	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
577	ss66080208	G/G	CSHL-HAPMAP	HapMap-CEU	NA12813	CEPH1454.13	chr3-HapMap-CEU
577	ss68873419	C/T	CSHL-HAPMAP	HapMap-CEU	NA12813	CEPH1454.13	chr3-HapMap-CEU
578	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
578	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	chr3-HapMap-CEU
578	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	chr3-HapMap-CEU
636	ss1928550	G/G	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	r23_ch3_CEU_illumina:golden_gate_1.0.0	398482
636	ss66080208	A/G	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	chr3-HapMap-CEU
636	ss68873419	C/C	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	chr3-HapMap-CEU
5139	ss1928550	A/G	CSHL-HAPMAP	HapMap-YRI	NA19100	YOR105.01	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5139	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA19100	YOR105.01	chr3-HapMap-YRI
5139	ss68873419	C/T	CSHL-HAPMAP	HapMap-YRI	NA19100	YOR105.01	chr3-HapMap-YRI
5142	ss1928550	A/A	CSHL-HAPMAP	HapMap-YRI	NA19194	YOR112.01	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5142	ss66080208	A/G	CSHL-HAPMAP	HapMap-YRI	NA19194	YOR112.01	chr3-HapMap-YRI
5142	ss68873419	T/T	CSHL-HAPMAP	HapMap-YRI	NA19194	YOR112.01	chr3-HapMap-YRI
5144	ss1928550	A/G	CSHL-HAPMAP	HapMap-YRI	NA19192	YOR112.03	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5144	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA19192	YOR112.03	chr3-HapMap-YRI
5144	ss68873419	C/T	CSHL-HAPMAP	HapMap-YRI	NA19192	YOR112.03	chr3-HapMap-YRI
5148	ss1928550	G/G	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	r23_ch3_HCB_illumina:golden_gate_1.0.0	398482
5148	ss66080208	A/G	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	chr3-HapMap-HCB
5148	ss68873419	C/C	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	chr3-HapMap-HCB
5149	ss1928550	G/G	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	r23_ch3_HCB_illumina:golden_gate_1.0.0	398482
5149	ss66080208	A/G	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	chr3-HapMap-HCB
5149	ss68873419	C/C	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	chr3-HapMap-HCB
5158	ss1928550	G/G	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	r23_ch3_HCB_illumina:golden_gate_1.0.0	398482
5158	ss66080208	A/G	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	chr3-HapMap-HCB
5158	ss68873419	C/C	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	chr3-HapMap-HCB
5159	ss1928550	G/G	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	r23_ch3_HCB_illumina:golden_gate_1.0.0	398482
5159	ss66080208	A/G	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	chr3-HapMap-HCB
5159	ss68873419	C/C	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	chr3-HapMap-HCB
5169	ss1928550	G/G	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	r23_ch3_HCB_illumina:golden_gate_1.0.0	398482
5169	ss66080208	A/G	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	chr3-HapMap-HCB
5169	ss68873419	C/C	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	chr3-HapMap-HCB
5175	ss1928550	G/G	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	r23_ch3_HCB_illumina:golden_gate_1.0.0	398482
5175	ss66080208	A/G	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	chr3-HapMap-HCB
5175	ss68873419	C/C	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	chr3-HapMap-HCB
5200	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5200	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	chr3-HapMap-JPT
5200	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	chr3-HapMap-JPT
5204	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5204	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	chr3-HapMap-JPT
5204	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	chr3-HapMap-JPT
5212	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5212	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	chr3-HapMap-JPT
5212	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	chr3-HapMap-JPT
5216	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18967	JA18967	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5216	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18967	JA18967	chr3-HapMap-JPT
5216	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18967	JA18967	chr3-HapMap-JPT
5220	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5220	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	chr3-HapMap-JPT
5220	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	chr3-HapMap-JPT
5229	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5229	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	chr3-HapMap-JPT
5229	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	chr3-HapMap-JPT
5231	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5231	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	chr3-HapMap-JPT
5231	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	chr3-HapMap-JPT
5232	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5232	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	chr3-HapMap-JPT
5232	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	chr3-HapMap-JPT
5233	ss1928550	A/G	CSHL-HAPMAP	HapMap-JPT	NA19005	JA19005	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5233	ss66080208	A/A	CSHL-HAPMAP	HapMap-JPT	NA19005	JA19005	chr3-HapMap-JPT
5233	ss68873419	C/T	CSHL-HAPMAP	HapMap-JPT	NA19005	JA19005	chr3-HapMap-JPT
5235	ss1928550	G/G	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	r23_ch3_JPT_illumina:golden_gate_1.0.0	398482
5235	ss66080208	A/G	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	chr3-HapMap-JPT
5235	ss68873419	C/C	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	chr3-HapMap-JPT
5267	ss1928550	A/G	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5267	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	chr3-HapMap-YRI
5267	ss68873419	C/T	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	chr3-HapMap-YRI
5283	ss1928550	A/G	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5283	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	chr3-HapMap-YRI
5283	ss68873419	C/T	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	chr3-HapMap-YRI
5291	ss1928550	G/G	CSHL-HAPMAP	HapMap-YRI	NA19207	YOR051.03	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5291	ss66080208	A/G	CSHL-HAPMAP	HapMap-YRI	NA19207	YOR051.03	chr3-HapMap-YRI
5291	ss68873419	C/C	CSHL-HAPMAP	HapMap-YRI	NA19207	YOR051.03	chr3-HapMap-YRI
5293	ss1928550	A/A	CSHL-HAPMAP	HapMap-YRI	NA19159	YOR056.02	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5293	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA19159	YOR056.02	chr3-HapMap-YRI
5293	ss68873419	T/T	CSHL-HAPMAP	HapMap-YRI	NA19159	YOR056.02	chr3-HapMap-YRI
5294	ss1928550	A/G	CSHL-HAPMAP	HapMap-YRI	NA19160	YOR056.03	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5294	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA19160	YOR056.03	chr3-HapMap-YRI
5294	ss68873419	C/T	CSHL-HAPMAP	HapMap-YRI	NA19160	YOR056.03	chr3-HapMap-YRI
5295	ss1928550	A/A	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5295	ss66080208	A/G	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	chr3-HapMap-YRI
5295	ss68873419	T/T	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	chr3-HapMap-YRI
5296	ss1928550	A/A	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5296	ss66080208	A/G	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	chr3-HapMap-YRI
5296	ss68873419	T/T	CSHL-HAPMAP	HapMap-YRI	NA19222	YOR058.02	chr3-HapMap-YRI
5310	ss1928550	A/G	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	r23_ch3_YRI_illumina:golden_gate_1.0.0	398482
5310	ss66080208	G/G	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	chr3-HapMap-YRI
5310	ss68873419	C/T	CSHL-HAPMAP	HapMap-YRI	NA19129	YOR077.01	chr3-HapMap-YRI

Genotype data submitted for	341	samples from	332	individuals	Individual with multiple genotypes submission:	270

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

Validated by: PERLEGEN

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .