NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs6894211          
refSNP ID: rs6894211
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NM_015577.1:c.37-34210T>C
NT_006576.15:g.34696120T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10258973 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs6894211 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss10258973BCM_SSAHASNP|chr5.NT_006576.13_17149556fwd/BC/Tagatgtgtatataggatgtttatttatctaagagagaaaaaaaaaggagattgattgatt06/27/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs6894211|allelePos=804|totalLen=1352|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=116
 TTTTGTAATG GCAGCTCTAG AAGACTAACA TCCCCTCCGG TTTTAGTGAA AATTTGTAAA
 GCATTGTTGT GTGATGTGGT GACAAGCAGA GAAATACAAA CTTAATCTCT gccaggcgtg
 atggctcatg cctgtaatcc cagcactttg ggaggctgag gcgggcagat cattggaggt
 caggagttcg gtaccagcct ggccagcatg gtgaaacccc gtctctacta aaaattcaaa
 aattagctgg gtgtggtgtt gtgctcttgt aattccagct acttgggggg ctgaggcagg
 agaatcactt gaaccaggga ggtggaggtt gcagtgagcc aagattgcgc cactTTGGGa
 atcccagcac tttgggaggc tgaggtgggc agatcactgg aggtcaggaa tttgagacca
 gcctgaccaa catggtgaaa ccccgtttct actaaaaata caaaaatgta taaataaatt
 aaaaaaaata caaaaattag ccaggcatgg tggtatgcac ttataattgc agctactcag
 gaggctgagg caggagaatc gcttgaaact gggaggcaga ggttgcagtg agccaagatt
 gcaccactgc actccagcct gggcgacaga gtgagaccct gtctcaaaaa aaaaaaaaaa
 aaaaCCCACT TCATCTTATT TTATGGATCC ACTGTGGAGT GATGGTGAGG GTAtatatta
 gagttctcca gagaaacaca accaatagga tgtttatcta tataCctata tatagatgtg
 tatataggat gtttattTAT CTA
 Y
 AGAGAGAAAA AAAAAGgaga ttgattgatt ctaaggaatt ggctcatgtg attgtgggct
 ggcagaatcg gaatctgtag ggcagcctga caggctggag acttcaaaga agagttggta
 tttcaagtca aaatgcagtt tggagacaga ataccttttt tgtgtgagat ctaagtcttt
 tggtcttcaa ctattcggat gaagcccacg tacattatgg aaggtgctcc tctttactca
 aagtttaccg atttaagtgt taatcatatc taaaaagtac attcacagca atatctagac
 tggtgtttga ccaaataact gcaccgtagt ttagccacct tgacacataa cattaaccgt
 cgcaTAGTGG AGATGAGGAA GTGGTAGTCT GGGCCTACGT TATATAAGAA TAGTGAAATT
 TCACCTGATT TAAGGAAAGC TAAATGTTAA ATGTTAACAA TGTGTTTTTA CATGTATAAC
 ATCACTTAAT TATTTGAATC AACCTTTTGT TTTAATACAT GAGTGAGTTG ACCATATATT
 TAGTTTTA

  GeneView back to top
GeneView via analysis of contig annotation: RAI14 retinoic acid induced 14
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_006576->NM_015577
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_006576->NM_015577->NP_05639234696120forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs6894211 maps exactly once on NCBI human chromosome 5
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
5NW_922596.131567334605159plusTalt_assembly_1CeleraCeleraview803
5NW_001838932.298542134671869minusAalt_assembly_8HuRefHuRefview803
5NT_006576.153469612034759120plusTref_assemblyreferencereferenceview803

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_006576
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .