Basic Search | Intermediate Search | Gene Image Map |  Home

Fusobacterium nucleatum Search Results

Record: 1 of 1  
MiniMap IGR402 IGR404 IGR405 IGR403 IGR401 bsaA, - FN2007 opuBA,yehX,proW,choQ, - FN2008 proWX,opuBC,opuBB, - FN2009 FN2002 valS, - FN2011 bioH,bioY, - FN2003 cbiQ, - FN2006 cbiO, - FN2005 bsaA, - FN2007 opuBA,yehX,proW,choQ, - FN2008 proWX,opuBC,opuBB, - FN2009 FN2002 valS, - FN2011 bioH,bioY, - FN2003 cbiQ, - FN2006 cbiO, - FN2005 bsaA, - FN2007 opuBA,yehX,proW,choQ, - FN2008 proWX,opuBC,opuBB, - FN2009 FN2002 valS, - FN2011 emrR, - FN2010 FN2001 emrR, - FN2010 FN2001 bioH,bioY, - FN2003 cbiQ, - FN2006 cbiO, - FN2005 cbiO,ybxA,ybaD, - FN2004 cbiO,ybxA,ybaD, - FN2004


Gene ID:FN2006

DNA Molecule Name:
1  

GenBank ID:
19713269

Gene Name:
cbiQ  

Definition:
ABC-type cobalt transport system, permease component

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
506219

Gene Stop:
507019

Gene Length:
801

Molecular Weight*:
30410

pI*:
10.50

Net Charge*:
12.15

EC:
3.4.11.15  

Functional Class:
Transport and binding proteins; ABC Superfamily: membrane spanning permease  
Transport and binding proteins; Cations  

Gene Ontology:
Biological process
  GO:0006824    cobalt ion transport
  GO:0009236    cobalamin biosynthetic process

Molecular function
  GO:0015087    cobalt ion transporter activity


Pathway: pathway table

Secondary Evidence:
Bossé JT, Gilmour HD, MacInnes JI.
Novel genes affecting urease acivity in Actinobacillus pleuropneumoniae.
J Bacteriol. 2001 Feb;183(4):1242-7.
PMID: 11157936

Comment:
Protein cbiP is FN2070 and FN0977, cbiO is FN2005 and FN2004, cbiK is FN1263, cbiB is FN0975, cbiA is FN0972, cbiC is FN0970, cbiD is FN0967, cbiE is FN0966, cbiT is FN0964, cbiL is FN0959, cbiF is FN0957, cbiG is FN0952, cbiH is FN0951, and cbiJ is FN0950.

View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
This sequence corresponds to 19705302 in GenBank. It also corresponds to RFNV02100, a predicted cbiQ protein in the vincentii subspecies.

Nearest neighbor is 28212150 from Clostridium tetani E88.


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|19705302|ref|NP_602797.1|  Cobalt transport protein cbiQ ...   383   e-105
 gi|148322449|gb|EDK87699.1|  cobalt (Co2+) ABC superfamily A...   383   e-105
 gi|34762735|ref|ZP_00143724.1|  Cobalt transport protein cbi...   371   e-101
 gi|153813474|ref|ZP_01966142.1|  hypothetical protein RUMOBE...   172   3e-41
 gi|153853814|ref|ZP_01995170.1|  hypothetical protein DORLON...   167   5e-40
 gi|121534664|ref|ZP_01666485.1|  cobalt transport protein [T...   167   5e-40
 gi|118443724|ref|YP_877231.1|  Cobalt transport protein [Clo...   166   1e-39
 gi|28212150|ref|NP_783094.1|  cobalt transport protein cbiQ ...   165   3e-39
 gi|148381388|ref|YP_001255929.1|  ABC transporter, permease ...   161   4e-38
 gi|126697673|ref|YP_001086570.1|  ABC transporter, permease ...   161   4e-38


InterPro Summary:  InterProScan

InterPro
IPR003339
Family
Cobalt transport protein
PF02361 [11-235]T 3.9e-44 PF02361 CbiQ CbiQ
noIPR
unintegrated
unintegrated
signalp [1-50]? NA signalp signal-peptide signal-peptide
tmhmm [34-56]? NA tmhmm transmembrane_regions[71-86]? NA tmhmm transmembrane_regions[105-125]? NA tmhmm transmembrane_regions[245-265]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
BeTs to 8 clades of COG0619
COG name: Cobalt permease and related transporters
Functional Class:? P
The phylogenetic pattern of COG0619 is AMTk--vC-Brh--GP-----
Number of proteins in this genome belonging to this COG is 1
Blocks Summary:  Blocks Search
No significant hits to the Blocks database.

 ProDom Summary:  Protein Domain Search
Residues 2-61 are 45% similar to a (PROTEOME COMPLETE MG181 YBAF) protein domain (PD019966 which is seen in Q9Z9J1_BACHD.

Residues 131-226 are 41% similar to a (PROTEOME COMPLETE TRANSMEMBRANE MG302) protein domain (PD220051 which is seen in Q9Z9J1_BACHD.


Paralogs:  Local Blast Search
FN2006 is paralogously related to FN0109 (hypothetical protein) (1e-04).


Pfam Summary:  Pfam Search
Residues 11 to 235 (E-value = 2e-43) place FN2006 in the CbiQ family which is described as Cobalt transport protein (PF02361)

 Structural Feature(s):
Feature Type  Start  Stop
Transmembrane  
22  
38
Transmembrane  
40  
56
Transmembrane  
68  
84
Transmembrane  
111  
127
Transmembrane  
201  
217
Transmembrane  
248  
264

Top PDB Hits:
No hits to the PDB database.

Gene Protein Sequence:
VNIILGEYIKKESILHQLDPRTKIIGSFSLILSFLFINTFIGYIITGILA
FTLILLSKIPLKEFLKSLKYLLYILIFSSIFHILSHQDGKLLLQLGKFSI
YDSGLFSALKIIFRIVFLLIFSSLLTLTTKPLDIALGLETLLSPLKKIGL
PIQDFSLMISITLRFIPTILQEANTIKMAQQARGESFEGKNPFKKLYQYS
LILLPLLVSVIQKVENITLAMEARAFHCGLERTNFYQLKFQKRDYIAGFF
ILLIIFLFLVLSLLHL$

Gene Nucleotide Sequence:  Sequence Viewer
GTGAATATAATATTAGGAGAGTATATAAAAAAAGAAAGTATATTACATCA
ACTAGACCCAAGAACTAAAATTATTGGGAGTTTTTCACTTATACTTTCTT
TTTTATTTATTAATACCTTTATAGGCTATATCATCACTGGAATTTTAGCT
TTTACACTTATTTTACTTTCTAAAATTCCCTTAAAAGAGTTTTTAAAAAG
TCTAAAATACCTTTTATATATCCTAATATTTTCATCTATTTTTCATATTT
TATCCCATCAAGATGGAAAATTATTACTTCAACTTGGTAAATTCTCTATC
TATGATAGTGGACTTTTTTCAGCTTTAAAAATAATTTTTAGAATAGTTTT
TCTTTTGATATTCTCTTCATTATTAACATTAACAACAAAGCCTTTAGATA
TTGCTTTAGGTTTGGAAACTCTACTAAGTCCTTTAAAGAAAATTGGTTTG
CCTATTCAAGATTTTTCTCTTATGATTAGTATTACCTTGAGATTTATCCC
TACAATCTTACAAGAGGCTAATACAATTAAAATGGCACAACAAGCAAGAG
GAGAAAGTTTTGAAGGAAAAAATCCTTTTAAAAAACTATATCAATATAGC
TTAATTCTTCTCCCACTTTTAGTTTCTGTTATACAAAAGGTTGAAAATAT
AACTTTGGCTATGGAAGCAAGAGCCTTTCATTGTGGATTAGAAAGAACTA
ACTTCTATCAGTTAAAATTTCAAAAAAGAGATTATATAGCTGGATTTTTT
ATACTTCTAATAATTTTTTTATTTCTTGTTCTATCACTTCTGCACTTGTA
G

Los Alamos National Laboratory • Est 1943

Operated by Los Alamos National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
Inside | © Copyright 2006 LANS LLC All rights reserved | Disclaimer/Privacy