BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN2012
(257 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19705308|ref|NP_602803.1| hypothetical protein FN2012 [F... 395 e-108
gi|34762742|ref|ZP_00143731.1| Hypothetical Cytosolic Prote... 362 1e-98
gi|148322460|gb|EDK87710.1| hypothetical protein FNP_2320 [... 358 2e-97
gi|148322459|gb|EDK87709.1| hypothetical protein FNP_2319 [... 106 1e-21
gi|148322458|gb|EDK87708.1| hypothetical protein FNP_2318 [... 81 5e-14
gi|148322457|gb|EDK87707.1| hypothetical protein FNP_2317 [... 71 5e-11
gi|34762741|ref|ZP_00143730.1| hypothetical protein [Fusoba... 68 6e-10
gi|109671566|ref|ZP_01373817.1| conserved hypothetical prot... 67 7e-10
>gi|19705308|ref|NP_602803.1| hypothetical protein FN2012 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713277|gb|AAL94102.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 257
Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats.
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MPETTYKYEDNEVKKKKTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHTY 60
MPETTYKYEDNEVKKKKTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHTY
Sbjct: 1 MPETTYKYEDNEVKKKKTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHTY 60
Query: 61 TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL 120
TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL
Sbjct: 61 TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL 120
Query: 121 KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYEDGLYVKTAELVTQKFV 180
KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYEDGLYVKTAELVTQKFV
Sbjct: 121 KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYEDGLYVKTAELVTQKFV 180
Query: 181 TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKKG 240
TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKKG
Sbjct: 181 TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKKG 240
Query: 241 TDVGIYEKKIIEYEYYE 257
TDVGIYEKKIIEYEYYE
Sbjct: 241 TDVGIYEKKIIEYEYYE 257
>gi|34762742|ref|ZP_00143731.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887592|gb|EAA24672.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 241
Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats.
Identities = 231/240 (96%), Positives = 236/240 (98%)
Query: 1 MPETTYKYEDNEVKKKKTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHTY 60
M ETTYKYEDNE+KKKKTIFN+NGYIIEEL YDKNRKEPYSYKKRYNDKGLLVESHEHTY
Sbjct: 1 MTETTYKYEDNEIKKKKTIFNKNGYIIEELQYDKNRKEPYSYKKRYNDKGLLVESHEHTY 60
Query: 61 TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL 120
TYEYDKNGNL QIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL
Sbjct: 61 TYEYDKNGNLAQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL 120
Query: 121 KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYEDGLYVKTAELVTQKFV 180
KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYE+EDGLYV+TAELVT+KFV
Sbjct: 121 KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEFEDGLYVETAELVTRKFV 180
Query: 181 TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKKG 240
TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNL YQVANRIEELDPEKKG
Sbjct: 181 TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLTYQVANRIEELDPEKKG 240
>gi|148322460|gb|EDK87710.1| hypothetical protein FNP_2320 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 325
Score = 358 bits (918), Expect = 2e-97, Method: Composition-based stats.
Identities = 227/258 (87%), Positives = 240/258 (93%), Gaps = 1/258 (0%)
Query: 1 MPETTYKYEDNEVKKKKTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHTY 60
M ETTYKYEDNE+KKKKTIFN+NGYIIEEL YDKNRKEPYSYKKRYNDKGLLVESHEHTY
Sbjct: 68 MTETTYKYEDNEIKKKKTIFNKNGYIIEELQYDKNRKEPYSYKKRYNDKGLLVESHEHTY 127
Query: 61 TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL 120
TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL
Sbjct: 128 TYEYDKNGNLVQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYL 187
Query: 121 KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYEDGLYVKTAELVTQKFV 180
KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYE+EDGLYV+TAELVT+KFV
Sbjct: 188 KDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEFEDGLYVETAELVTRKFV 247
Query: 181 TYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEK-K 239
TYYDKAGNEV Y W T+ ++PR QL+LVFK+ KRDKYGNL Y+VANR+E D K K
Sbjct: 248 TYYDKAGNEVYYMWATWRTSQEEPRIQLYLVFKDTKRDKYGNLTYKVANRVEVADITKGK 307
Query: 240 GTDVGIYEKKIIEYEYYE 257
G DVGIYEKK+IEYEYYE
Sbjct: 308 GNDVGIYEKKVIEYEYYE 325
>gi|148322459|gb|EDK87709.1| hypothetical protein FNP_2319 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 318
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 101/251 (40%), Positives = 148/251 (58%), Gaps = 20/251 (7%)
Query: 19 IFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVES-----HEHTYTYEYDKNGNLVQI 73
IFN GYI E+H +S Y++ G L+ S EH Y YEYD+NG LVQ
Sbjct: 76 IFNSQGYITTEIH-----GGAFSLSYEYDENGYLIRSVDVYGIEHEYEYEYDENGYLVQT 130
Query: 74 KRP-KNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYLKDKNGELYQSLT 132
R K ++ +++ YNK GK+ ++Q FTQ++Y K G+K++ + Y KDK L++ L+
Sbjct: 131 DRERKKRSFANMKKNFYNKDGKLAKSQLFTQSEYSKKGIKLSSSAKYEKDKKKGLFELLS 190
Query: 133 DYSYIYNKDGKLQEIRDNVFSSGT--IKYSYE-YEDGLYVKTAEL-VTQKFVTYYDKAGN 188
+ +Y+Y+K+GKL I D S+ I ++E ++DG YVKT E+ Q F T YDK GN
Sbjct: 191 EETYVYDKNGKLLRIDDTKASANREYIVITFENFKDGKYVKTVEVNRIQAFKTCYDKDGN 250
Query: 189 EVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKK-GTDVG-IY 246
E+++ WITYS + + Q +++ K+DKYGNLI + +E D KK G + G I
Sbjct: 251 EIEWAWITYS---PEEQIQSFILYSGIKKDKYGNLIEKTGKYLEITDGGKKLGKETGLIA 307
Query: 247 EKKIIEYEYYE 257
E+ IEY YYE
Sbjct: 308 EEMKIEYIYYE 318
>gi|148322458|gb|EDK87708.1| hypothetical protein FNP_2318 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 309
Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 29/251 (11%)
Query: 18 TIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHT-----YTYEYDKNGNLVQ 72
T FNE+GYI EE++Y K+ Y +YN GLL+ES+++ +TYEYDKNGNLV+
Sbjct: 77 TNFNESGYITEEVNYYSGDKKQI-YSNKYNKDGLLIESNDYIGRKWFHTYEYDKNGNLVE 135
Query: 73 IKRPK-----NSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYLKDKNGEL 127
K+P+ + + ++ TY+K G+II + +T+ + Y KD
Sbjct: 136 TKKPEIRRKSDKKHLQYKKNTYDKNGRIIEEKWYTK------------EVGYQKD----- 178
Query: 128 YQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYE-DGLYVKTAELVTQKFVTYYDKA 186
++ Y+ +Y+ G L E+RDN+ S +IK++YEY+ +G Y++T + Y+DK
Sbjct: 179 FELSGSYTNVYDSKGLLIELRDNISFSNSIKFTYEYDANGGYLRTGLSTSSTIQQYFDKN 238
Query: 187 GNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKKGTDVGIY 246
G E + ++ +PR HL + K + + ++ + GI
Sbjct: 239 GIEKETLSTSWISKDTEPRVDQHLKMETKLDGKGNIIEETEIRIEIINEKTREYKENGIR 298
Query: 247 EKKIIEYEYYE 257
+K +I YEYYE
Sbjct: 299 KKTVITYEYYE 309
>gi|148322457|gb|EDK87707.1| hypothetical protein FNP_2317 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 287
Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 33/269 (12%)
Query: 1 MPETTYKYEDNEVKKK----KTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESH 56
M +T Y+Y+ + +K +T FNE GYI +E+ Y NR S + N GL ++
Sbjct: 40 MVKTEYEYDSSGKLEKTWVTETYFNEQGYITDEVQYVDNRLNQ-SIIYKNNSDGLPIKKD 98
Query: 57 E----HTYTYEYDKNGNL---VQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKA 109
E ++Y YE K+GNL ++ + N + LE+ TYNK GK + ++
Sbjct: 99 EVSRVYSYKYEETKDGNLLVTIKEENVDNVNFPLLEKITYNKNGKKVHHLVYS------- 151
Query: 110 GVKITDDSNYLKDKNGELYQSLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYE-DGLY 168
G ++ + Y+ ++ G L I K +++DN F IK +Y+Y+ +G Y
Sbjct: 152 GKELITNDTYIYNEKGNL---------IEIKQAVSTDVKDNRFRENGIKITYDYKTNGDY 202
Query: 169 VKTAELVTQKFVTYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVA 228
KT E+ T K+ YDK GNE +Y + + K + ++L FK+ RD++GNL +
Sbjct: 203 EKTTEVATAKWTYLYDKNGNEQEYISMIKTGSEGKTKISIYLKFKDIARDEHGNLTRSTS 262
Query: 229 NRIEELDPEKKGTDVGIYEKKIIEYEYYE 257
R + ++K GIY++ +YEYY+
Sbjct: 263 VRYDYSKKKEK----GIYKRLENKYEYYK 287
>gi|34762741|ref|ZP_00143730.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27887591|gb|EAA24671.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 289
Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 49/277 (17%)
Query: 1 MPETTYKYEDNEVKKK----KTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESH 56
M +T Y+Y+ + +K +T FN+ GYI E+ Y NR S + N GL ++
Sbjct: 42 MIKTEYEYDSSGELEKTWVTETYFNQQGYITNEIQYVDNRLNQ-SIIYKNNSDGLPIKKD 100
Query: 57 E----HTYTYEYDKNGNL---VQIKRPKNSAYGGLERTTYNKAGKIIRTQTFTQNQYDKA 109
E ++Y YE K+GNL ++ + N + LE+ TYNK GK + +++ +
Sbjct: 101 EVSRVYSYKYEETKDGNLLVTIKEENVDNENFPLLEKITYNKNGKKVHHLVYSRKEL--- 157
Query: 110 GVKITDDSNYLKDKNGELYQSLTDYSYIYNKDGKLQEIR--------DNVFSSGTIKYSY 161
+ D YIYN+ G L EI+ DN IK +Y
Sbjct: 158 ---------------------IVDDMYIYNEKGNLIEIKKAVSTDVKDNRLRKNGIKITY 196
Query: 162 EYE-DGLYVKTAELVTQKFVTYYDKAGNEVKYKWITYSLGPDKPRTQLHLVFKENKRDKY 220
Y+ +G Y KT E+ T K+ YDK GNE +Y + + K + ++L FK+ RD++
Sbjct: 197 NYKANGDYEKTTEVATAKWTYLYDKNGNEQEYISMIKTGSEGKTKISIYLKFKDITRDEH 256
Query: 221 GNLIYQVANRIEELDPEKKGTDVGIYEKKIIEYEYYE 257
GNL + R + ++K GIY++ +YEYY+
Sbjct: 257 GNLTRSTSVRYDYSKKKEK----GIYKRLENKYEYYD 289
>gi|109671566|ref|ZP_01373817.1| conserved hypothetical protein [Campylobacter concisus 13826]
gi|112800417|gb|EAT97761.1| conserved hypothetical protein [Campylobacter concisus 13826]
Length = 299
Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 37/252 (14%)
Query: 16 KKTIFNENGYIIEELHYDKNRKEPYSYKKRYNDKGLLVESHEHT--YTYEYDKNG-NLVQ 72
K+T FN+NGYI++E + N S Y GL+ + ++ + Y YEY+ +G NLV+
Sbjct: 75 KRTEFNKNGYIVQETEH-INGIPNSSVLFEYGKDGLIRKKYQDSAVYLYEYEFDGENLVE 133
Query: 73 IKRPK---NSAYGGLERTTYNKAGKIIRTQTFTQNQYDKAGVKITDDSNYLKDKNGELYQ 129
+ + + Y E+TTY K GK+I ++ +
Sbjct: 134 TAKEQYIEDKFYPRTEKTTYGKDGKMIARAVYSGREL----------------------- 170
Query: 130 SLTDYSYIYNKDGKLQEIRDNVFSSGTIKYSYEYE-DGLYVKTAELVTQKFVTYYDKAGN 188
+ D SY+Y++ G L I DN+ I+ S+E + +G Y K + K+V YY G+
Sbjct: 171 -VIDDSYVYDEKGVLTRIEDNMEPRHGIEISFERKPNGEYEKITQAPNSKWVYYYAANGD 229
Query: 189 EVKYKWITYSLGPDKPRTQLHLVFKENKRDKYGNLIYQVANRIEELDPEKKGTD---VGI 245
E++Y + Y G + Q+ L FK+ RD+ GNL ++ + + + D + D +G+
Sbjct: 230 EMEYTSVNY-FGSEAKIWQI-LQFKDISRDERGNLTHKTSVKFKPADKYYENGDIKEIGL 287
Query: 246 YEKKIIEYEYYE 257
Y+K I YEYYE
Sbjct: 288 YKKLQISYEYYE 299
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.311 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,057,310,063
Number of Sequences: 5470121
Number of extensions: 48495474
Number of successful extensions: 136052
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 135995
Number of HSP's gapped (non-prelim): 11
length of query: 257
length of database: 1,894,087,724
effective HSP length: 130
effective length of query: 127
effective length of database: 1,182,971,994
effective search space: 150237443238
effective search space used: 150237443238
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 128 (53.9 bits)