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Sample GSM3114 Query DataSets for GSM3114
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-20, tumor tissue, 1st repetition
Sample type RNA
 
Source Name Gastrointestinal Stroma Tumor
Organism(s) Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-20
sex=f
age=65
birthyear=1934
stage=primary
type=GIST
tumorsite=stomach
survival_months=18
died=no
tumorsize.cm=5
CD34_expression=yes
SMA_expression=no
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211239 reuse=4 date=23-Jan-2001
 
Submission date Dec 11, 2002
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 554135 490000 64135
2 465565 490000 -24435
3 421500 490000 -68500
4 550119 490000 60119
5 372756 490000 -117244
6 15075986 490000 14585986
7 11237286 490000 10747286
8 362907 490000 -127093
9 403757 490000 -86243
10 298795 490000 -191205
11 349187 490000 -140813
12 473675 490000 -16325
13 11999122 490000 11509122
14 446397 490000 -43603
15 264299 490000 -225701
16 611699 490000 121699
17 734746 466489 268257
18 705139 466489 238650
19 435428 466489 -31061
20 258200 466489 -208289

Total number of rows: 36864

Table truncated, full table size 976 Kbytes.




Supplementary data files not provided

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