Reference SNP(refSNP) Cluster Report: rs10752823

Reference SNP(refSNP) Cluster Report: rs10752823

refSNP ID: rs10752823
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_144698.3:c.325-400A>C
NT_004434.18:g.747084A>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss16399047 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10752823 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss16399047	CSHL-HAPMAP\|CSHL-HuAA-200402.chr1.NT_004434.16_742949	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	02/17/04	03/04/04	120	Genomic	unknown
ss18079883	SC_SNP\|SC-CHR1_NA11321-200402.chr1.NT_004434.16_742949	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	02/20/04	03/04/04	120	Genomic	unknown
ss18150803	SC_SNP\|SC-CHR1_NA17109-200402.chr1.NT_004434.16_742949	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	02/20/04	03/04/04	120	Genomic	unknown
ss18253527	SC_SNP\|SC-CHR1_NA07340-200402.chr1.NT_004434.16_742949	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	02/20/04	03/04/04	120	Genomic	unknown
ss20569390	SSAHASNP\|WGSA-200403-chr1.chr1.NT_004434.16_742949	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	03/18/04	03/18/04	121	Genomic	unknown
ss77658390	HGSV\|Cor12156_SNV_20070510.chr1_143046852	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	10/09/07	10/14/07	129	Genomic	unknown
ss83680634	HGSV\|Cor18555_SNV_20070510.chr1_143046852	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	11/27/07	12/05/07	130	Genomic	unknown
ss84526940	HGSV\|Cor19240_SNV_20070510.chr1_143046852	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	11/30/07	12/07/07	130	Genomic	unknown
ss87797639	BCMHGSC_JDW\|JWB-0120217	fwd/T	A/C	caagatcgcaccactgcactccagtctggg	aacagagagagactctgtctcaaaaaaaaa	02/26/08	02/26/08	129	Genomic	unknown

Fasta sequence (Legend)

 TCATTAGCAG AGCCACTGCA GAGACTTCCT GCTATGATGA GGGGCAAGAG GAAGGAGGAC
 AGAGATGTTC AAATTAAACC AAAGCCCTAC TGTCTGTTTC TGAAGAGTTT ATAGTCTAGT
 AGTATAAAGA GAAATATACA TGTAAAATGA CATGTGGATC ATTTATAAAT GAGTCTCCAA
 AAGCACAAAA GGCAGTTACT ggccgggtgc ggtggctcat gcctgtaatc ccagactttg
 ggagatggag gtgggcagat cacaagatca ggagatcgag accatcctgg ctaacacagt
 gaaaccccat ctctaataaa aatacaaaag attagctggg tgtggtggca cgtgcctgta
 gtcccagtta ctcgggaggc tgaggcagga gaatcgcttc aacccaggag gcggaggttg
 cagtgatcca agatcgcacc actgcactcc agtctggg
 M
 aacagagaga gactctgtct caaaaaaaaa aaaaaaaaaT CAGTTATCTT AACCGGCCAT
 CAGGCAAATG GATGTTCTAC TTTCGTTCTT CCTAATCCTT TCCAAATTTC ACAATTATGT
 TTCTAAAGTA CCAGCCACGG GGACATTGGG TGTCATTTTC CCTAACACGT TTATTACCAT
 CTGATTTTTC TTAGCCCCTT GGTTTAGAAA CCAGGGCTGA TATTCAAGGC TGCCTATCA

GeneView

GeneView via analysis of contig annotation: ANKRD35 ankyrin repeat domain 35

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_004434->NM_144698

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_004434->NM_144698->NP_653299	747084	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10752823 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838504.2	215085	119521530	minus	G	alt_assembly_8	HuRef	HuRef	view	458
1	NW_923795.1	173671	119761179	plus	C	alt_assembly_1	Celera	Celera	view	458
1	NT_004434.18	747084	144269165	plus	A	ref_assembly	reference	reference	view	458

NCBI Resource Links

Submitter-Referenced
GenBank
NT_004434

dbSNP Blast Analysis
GenBank HTGS Finished:
AL160282.18

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .