Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss10598446	BCM_SSAHASNP|chr10.NT_017696.14_1154762		fwd/B	G/T	gttcccattatatgggctgcattttaattg	tcagggaaatgctcagaaccctcccacctg	06/29/03	03/31/08	116	Genomic			unknown
ss12074787	WI_SSAHASNP|chr10.NT_017696.14_1154762		fwd/B	G/T	gttcccattatatgggctgcattttaattg	tcagggaaatgctcagaaccctcccacctg	07/04/03	10/10/03	116	Genomic			unknown
ss23724112	PERLEGEN|afd4110033		fwd/B	G/T	gttcccattatatgggctgcattttaattg	tcagggaaatgctcagaaccctcccacctg	08/10/04	09/13/04	123	Genomic			unknown
ss66364477	AFFY|SNP_A-2001128		rev/T	A/C	ctgagcatttccctga	caattaaaatgcagcc	10/29/06	03/31/08	127	Genomic			unknown
ss76085744	AFFY|AFFY_6_1M_SNP_A-2001128		rev/T	A/C	ctgagcatttccctga	caattaaaatgcagcc	08/28/07	08/29/07	129	Genomic			unknown
ss88199500	BCMHGSC_JDW|JWB-0274060		fwd/B	G/T	gttcccattatatgggctgcattttaattg	tcagggaaatgctcagaaccctcccacctg	02/26/08	02/27/08	129	Genomic			unknown

Fasta sequence   (Legend)

 TATAACCTTT CCTCCACAAG AATGGCATAG TGACTTGCAT TTTTAATGAG TTTATGGCCA
 AGAGGGGCAT CTagtagtgt gctggggcca gctggtactg gctaatgaga accagttgtt
 aaatctttca agaactttga agccagttgt taaacacagc catcatcaac attaaaaata
 gtataaactt ataattaaat aaattatatt aaacatgaaa gtaataaata ctcaaacact
 ccacatccta attattttac tacattttaA GAcacagtgg cagcttgtta gagggcttgg
 tgggagtatt tacaccatgg taataagcaa aggctaaaac caggggcttc cccctccccg
 gccaggagca agtggttgaa tatttaccat cacactactg GGGGTTCCCA TAGGAGATGA
 CCTGAGCTAA CAGTGTGGCC GTGAATATAA ACTCTCAAGC AACCTGTTCC CCAATAATGC
 TAACTTTCTA GAACAGTTCC CATTATATGG GCTGCATTTT AATTG
 K
 TCAGGGAAAT GCTCAGAACC CTCCCACCTG CACAGGAGTC TGTCGTCCAA AAGACCACCA
 GGATCActaa atagtgaaaa ggagatcctt attggtgata gcagttgggg aactgtaaag
 agacagtctc tggcaagtac caagatgctc tgtctttgaa gaggggaagg gcaatttggg
 tttcacggct cacaaggctg gtatcctatg tatgcagcag gtttggggga aaagctgtac
 atatttatga ggagagtcaa gtgcatgcac agtgggtaaa catgtatgtc acatacatcc
 catgtttact ttgaggcagg gttttagcat taaaagaagt agaatttggc tttttatgac
 aaaaggtgaa ccatatgaca caaagacagt ttgtgcacag cctctgtaag ctgctgaaaa
 tggcttaagg tctgcaattg cttatcaaga aagaatgttg gtaagggcat cctctgtcca
 atcagagttg tagtgactgg gttgtaaata agacttggaa ggggtctgat agcaccattg
 ttagggagtt tggagccata ggaatataga gattactcat gccagccagg ccctgaacca
 acctgtaggt aactttgttt ccttaacctt ggtgtctgtc ttagttgata cagcggtgtt
 tattttgatc tttcagatta caAGTCGCAA TTTAGGAAGG GTGCTCCATC ATCATTTCAT
 GATTCTCACT ACAGCCCAGA CAGGTGGGCA GAGCAGTGTT CTTTCCCCTT TAATGAATGA
 AGAAGCTGAG CCTCAAACAG ATGAGGGGGC TTCCTG

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_017696->XM_001128700 function
HuRef	NW_001837975->XM_001715110 function
Celera	NW_924685->XM_001127767 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	HWP	G	T
ss10598446	HapMap-CEU	European	118	IG	0.898	0.102		0.949	0.051
	HapMap-HCB	Asian	90	IG	0.978	0.022		0.989	0.011
	HapMap-JPT	Asian	90	IG	0.978	0.022		0.989	0.011
	HapMap-YRI	Sub-Saharan African	120	IG	0.783	0.217		0.892	0.108
ss23724112	AFD_EUR_PANEL	European	48	IG	0.958	0.042	1.000	0.979	0.021
	AFD_AFR_PANEL	African American	46	IG	0.913	0.087	1.000	0.957	0.043
	AFD_CHN_PANEL	Asian	48	IG	1.000			1.000
ss66364477	HapMap-CEU	European	118	GF	0.898	0.102		0.949	0.051
	HapMap-HCB	Asian	90	GF	0.978	0.022		0.989	0.011
	HapMap-JPT	Asian	90	GF	1.000			1.000
	HapMap-YRI	Sub-Saharan African	120	GF	0.783	0.217		0.892	0.108

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN