UI-R-BO1

Library Description

The library (UI-R-BO1) is a subtracted library derived from a mixture of the following tissues: thalamus, cerebellum, hypothalamus, medulla, pons, midbrain, cerebral cortex, corpus striatum and hippocampus. For a detailed description of the library from which this clone was derived, please visit our web site at ratest.eng.uiowa.edu. The subtraction has been previously described in (Bonaldo, Lennon and Soares, Genome Research 6:791-806, 1996)

Source: Soares, MB, Children's Memorial Research Center

Gene Content Analysis

4,648 ESTs from this library were grouped into 3,348 UniGene entries (putative genes) [UniGene build #179, 05-Feb-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM		UniGene Entry
2	430		Rn.206423	Transcribed locus.
2	430		Rn.206419	Transcribed locus.
2	430		Rn.206418	Transcribed locus.
2	430		Rn.206415	Transcribed locus.
2	430		Rn.206414	Angiogenic factor with G patch and FHA domains 1.
2	430		Rn.206410	Family with sequence similarity 184, member A.
2	430		Rn.206408	Transcribed locus.
2	430		Rn.206406	Transcribed locus.
2	430		Rn.206373	Transcribed locus.
2	430		Rn.206358	Transcribed locus.
2	430		Rn.206356	Transcribed locus.
2	430		Rn.206350	Transcribed locus.
2	430		Rn.206347	Transcribed locus.
2	430		Rn.206340	Transcribed locus.
2	430		Rn.206333	Transcribed locus.
2	430		Rn.206332	Transcribed locus.
2	430		Rn.206331	Transcribed locus.
2	430		Rn.206318	Transcribed locus.
2	430		Rn.206317	Transcribed locus.
2	430		Rn.206316	Transcribed locus.
2	430		Rn.206315	Transcribed locus.
2	430		Rn.206314	Transcribed locus.
2	430		Rn.206312	Transcribed locus.
2	430		Rn.206311	Transcribed locus.
2	430		Rn.206310	Transcribed locus.
2	430		Rn.206306	Transcribed locus.
2	430		Rn.206305	Transcribed locus, strongly similar to NP_060903.2 jumonji domain containing 1A [Homo sapiens].
2	430		Rn.206304	Transcribed locus.
2	430		Rn.206042	Transcribed locus, strongly similar to NP_062077.1 beta-site APP cleaving enzyme [Rattus norvegicus].
2	430		Rn.205896	Transcribed locus.
2	430		Rn.205762	Transcribed locus.
2	430		Rn.205506	Transcribed locus.
2	430		Rn.205490	RGP1 retrograde golgi transport homolog (S. cerevisiae).
2	430		Rn.205099	Transcribed locus.
2	430		Rn.204953	Transcribed locus.
2	430		Rn.204926	Caldesmon 1.
2	430		Rn.204779	Transcribed locus.
2	430		Rn.204561	T-cell lymphoma invasion and metastasis 1.
2	430		Rn.20445	Formin binding protein 1.
2	430		Rn.203839	Lipin 2.
2	430		Rn.203721	Casein kinase 1, epsilon.
2	430		Rn.203644	Zinc finger protein 84.
2	430		Rn.203362	Hect domain and RLD 3.
2	430		Rn.203285	Prostaglandin reductase 2.
2	430		Rn.203261	Radixin.
2	430		Rn.203194	Transcribed locus.
2	430		Rn.203162	Similar to Golgi phosphoprotein 2 (Golgi membrane protein GP73).
2	430		Rn.203027	Nardilysin 1 (N-arginine dibasic convertase).
2	430		Rn.202997	Transcribed locus.
2	430		Rn.202731	Similar to tumor necrosis factor receptor superfamily, member 19.
2	430		Rn.202729	Transcribed locus.
2	430		Rn.202728	Transcribed locus.
2	430		Rn.202643	ATG4 autophagy related 4 homolog D (S. cerevisiae).
2	430		Rn.201962	Transcribed locus.
2	430		Rn.201915	Transcribed locus, strongly similar to NP_001071140.1 cleavage stimulation factor, 3' pre-RNA, subunit 3 [Rattus norvegicus].
2	430		Rn.201745	F-box protein 3.
2	430		Rn.2011	Peroxiredoxin 3.
2	430		Rn.20004	Similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2.
2	430		Rn.19982	Dedicator of cyto-kinesis 3.
2	430		Rn.199769	Transcribed locus.
2	430		Rn.199645	Transcribed locus.
2	430		Rn.199644	Transcribed locus.
2	430		Rn.199643	Transcribed locus.
2	430		Rn.199640	Transcribed locus.
2	430		Rn.199638	Transcribed locus.
2	430		Rn.199628	Transcribed locus.
2	430		Rn.199626	Transcribed locus.
2	430		Rn.199625	Transcribed locus.
2	430		Rn.199624	Transcribed locus.
2	430		Rn.199622	Transcribed locus.
2	430		Rn.19953	Amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65).
2	430		Rn.19932	Dispatched homolog 2 (Drosophila).
2	430		Rn.199174	Transcribed locus.
2	430		Rn.199171	Transcribed locus, strongly similar to NP_758478.1 coiled-coil and C2 domain containing 2A [Mus musculus].
2	430		Rn.199158	Transcribed locus.
2	430		Rn.199131	Actin filament associated protein 1-like 1.
2	430		Rn.199113	Transcribed locus.
2	430		Rn.198847	ADP-ribosylation factor-like 4C.
2	430		Rn.198843	Splicing factor 3b, subunit 1.
2	430		Rn.198826	EF-hand domain (C-terminal) containing 1.
2	430		Rn.198820	ATR interacting protein.
2	430		Rn.198815	DnaJ (Hsp40) homolog, subfamily A, member 4.
2	430		Rn.198802	Testis expressed gene 9.
2	430		Rn.198771	Ataxia, cerebellar, Cayman type.
2	430		Rn.198672	Leucine rich repeat containing 4.
2	430		Rn.198626	Solute carrier family 2 (facilitated glucose transporter), member 6.
2	430		Rn.198600	Similar to Thrombospondin-3 precursor.
2	430		Rn.198357	Transcribed locus.
2	430		Rn.198318	Interferon, alpha-inducible protein (clone IFI-15K).
2	430		Rn.198233	Scleraxis.
2	430		Rn.19673	CUE domain containing 2.
2	430		Rn.195321	CD99 antigen.
2	430		Rn.19254	Echinoderm microtubule associated protein like 5.
2	430		Rn.19026	Erythrocyte protein band 4.1-like 3.
2	430		Rn.18744	NIMA (never in mitosis gene a)-related kinase 6.
2	430		Rn.186904	Solute carrier family 6 (neurotransmitter transporter), member 17.
2	430		Rn.18446	Praja 2, RING-H2 motif containing.
2	430		Rn.18210	Ubiquitin-like modifier activating enzyme 5.
2	430		Rn.18129	Transcribed locus.
2	430		Rn.179335	PP3111 protein.

Source: NCBI UniGene

EST Sequences

5,448 EST sequences from this library have been submitted to the public sequence database as of 05-Feb-2009.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

• brain
• adult
• subtracted

Source: NCBI Clone Registry

References

Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al., Genome Res 6, 791-806 (1996).