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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 






processing output:
cycle 1
cycle 2
cycle 3
cycle 4

Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family   begin  end (left)  ID

   22   5.6  0.0  0.0  A09A10_CONSENSUS    326  361   (52) +  AT_rich  Low_complexity     1   36    (0)      



Alignments:
22  5.56  0.00  0.00  A09A10_CONSENSUS  326  361  (52)  C  AT_rich#Low_complexity  (264)  36  1  5

  A09A10_CONSENSU    326 TATTATTAATAACAATTTGTTATTATTAATTATTAA 361    
                             vv vv  vivv v i     vv vv vv  vv
C AT_rich#Low_com     36 TATTTATTTTATTTTTATATTATTTATTTTATTTTT 1      

Transitions / transversions = 0.12 (2 / 16)
Gap_init rate = 0.00 (0 / 36), avg. gap size = 0.00 (0 / 0)  



Masked Sequence:
>A09A10_CONSENSUS
GGGGGGGGGGGNGGAATNTCACGCCACCAACAACTACGGTGGTGGTCCTG
CTATAAATAATAGTGGCAATTTCCAGGGACATGGCAATGGAGGCTTTATT
GGTGGTAATTTCGATGCCTCAACGAGGAACTACTGATTAATTTATGTATG
ATCAACTTCATGTATTAAATATCGTGTTNTGCGCTACGTATACTAATTAA
TAATAAAATTAGAGCTGCATGCTGCAGCTCTAACAGTGTGTGATATGAAT
AATTACTTGAGAGGGGGGATACGACACACCTTCTTGAGTTCATAAATTTC
AATTCCGATCTTTTTGGTTGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTGACTTCTATAATAACAATTTGTTAACTTTGCTAAAAA
AAAAAAAAAAAAA



Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       413 bp
GC level:         34.88 %
bases masked:        36 bp (  8.72 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       1           36 bp     8.72 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000




Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  A09A10_CONSENSUS
        (413 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 5 Sequences     : less than 5 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1379 277 |=======================================================
   6310 1102 160 |================================
   3980  942 235 |===============================================
   2510  707 124 |========================
   1580  583 134 |==========================
   1000  449 131 |==========================
    631  318  79 |===============
    398  239  54 |==========
    251  185  44 |========
    158  141  39 |=======
    100  102  19 |===
   63.1   83  21 |====
   39.8   62  18 |===
   25.1   44   7 |=
   15.8   37   7 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 30  <<<<<<<<<<<<<<<<<
   10.0   30  13 |==
   6.31   17   7 |=
   3.98   10   2 |:
   2.51    8   1 |:
   1.58    7   2 |:
   1.00    5   0 |
   0.63    5   1 |:
   0.40    4   2 |:
   0.25    2   0 |
   0.16    2   0 |
   0.10    2   0 |
  0.063    2   0 |
  0.040    2   0 |
  0.025    2   0 |
  0.016    2   0 |
  0.010    2   0 |
 0.0063    2   0 |
 0.0040    2   0 |
 0.0025    2   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7008011|dbj|BAA90878.1|(AB031228) PsAD2 [Pisum sat... +2   127  2.6e-07   1
gi|7507106|pir||T24470hypothetical protein T04F8.8 - ... +2    91  0.0021    1
gi|7488739|pir||T09610environmental stress-induced pr... +2    70  0.25      1
gi|7442088|pir||T09527glycine-rich protein 1 - chickp... +2    80  0.32      1
gi|3893085|emb|CAA10192.1|(AJ012829) glycine-rich pro... +2    82  0.36      1
gi|7442080|pir||T00799hypothetical protein F24L7.17 -... +2    79  0.71      1
gi|1170023|sp|Q09134|GRPA_MEDFAABSCISIC ACID AND ENVI... +2    77  0.76      1
gi|82087|pir||S19774glycine-rich protein - tomato (fr... +2    62  0.89      1
gi|4581180|gb|AAD24663.1|AC006220_19(AC006220) putati... +2    75  0.93      1
gi|82696|pir||S20846glycine-rich protein - maize >gi|... +2    74  0.97      1
gi|3781|emb|CAA27004.1|(X03245) ded1 protein (aa 1-11... +2    70  0.98      1
gi|3021529|emb|CAA76339.1|(Y16641) hnRNP protein [Rat... +2    74  0.99      2
gi|103964|pir||A43782keratin, type II - eastern newt ... +2    79  0.991     1
gi|2370339|emb|CAA04655.1|(AJ001295) cytokeratin type... +2    79  0.991     1
gi|322758|pir||PQ0477pistil extensin-like protein (cl... -3    59  0.995     1
gi|9757863|dbj|BAB08497.1|(AB010073) gene_id:MFB13.20... +2    59  0.995     1
gi|7503186|pir||T22078hypothetical protein F41E7.5 - ... +2    69  0.996     1
gi|121644|sp|P17816|GRP_HORVUGLYCINE-RICH CELL WALL S... +2    74  0.999     1
gi|7299784|gb|AAF54963.1|(AE003701) CG16901 gene prod... +2    58  0.999     1
gi|4581173|gb|AAD24656.1|AC006220_12(AC006220) putati... +2    70  0.9994    1
gi|7498539|pir||T28938hypothetical protein F07C4.7 - ... +2    73  0.9995    1
gi|138021|sp|P08234|VG38_BPM1RECEPTOR RECOGNIZING PRO... +2    75  0.9997    1
gi|1710623|sp|P51989|RO21_XENLAHETEROGENEOUS NUCLEAR ... +2    76  0.9998    1
gi|6755634ref|NP_035601.1| small proline-rich protein... -3    57  0.9999    1
gi|6755636ref|NP_035602.1| small proline-rich protein... -3    57  0.9999    1
gi|6755642ref|NP_035605.1| small proline-rich protein... -3    57  0.9999    1
gi|1710625|sp|P51968|RO31_XENLAHETEROGENEOUS NUCLEAR ... +2    76  0.99993   1
gi|542649|pir||S40777heterogeneous ribonuclear partic... +2    76  0.99993   1
gi|1710627|sp|P51991|ROA3_HUMANHETEROGENEOUS NUCLEAR ... +2    76  0.99995   1
gi|729185|sp|Q07202|CORA_MEDSACOLD AND DROUGHT-REGULA... +2    73  0.99995   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 2 Hits
gi|7008011             |________________                                  
gi|7507106             |______________                                    
gi|7488739             |________________                                  
gi|7442088             |________________                                  
gi|3893085             |________________                                  
gi|7442080             |_____________                                     
gi|1170023             |________________                                  
gi|82087               |________________                                  
gi|4581180             |_____________                                     
gi|82696               |______________                                    
gi|3781                |    ____________                                  
gi|3021529             |________________                                  
gi|103964              |________________                                  
gi|2370339             |________________                                  
gi|9757863             |________________                                  
gi|7503186             |_____________                                     
gi|121644              |_____________                                     
gi|7299784             |_____________                                     
gi|4581173             |_____________                                     
gi|7498539             |______________                                    
gi|138021              |__________________                                
gi|1710623             |______________                                    
gi|1710625             |________________                                  
gi|542649              |________________                                  
gi|1710627             |________________                                  
gi|729185              |_____________                                     
Prosite Hits:                         ____                                
                        __________________________________________________
Query sequence:        |                 |                 |              | 138
                       0                50               100
__________________
Prosite hits:
   TYR_PHOSPHO_SITE     Tyrosine kinase phosphorylation site.    41..49
__________________


Locus_ID                Frame 1 Hits
gi|3021529             |___                                               
                        __________________________________________________
Query sequence:        |                 |                 |              | 138
                       0                50               100


Locus_ID                Frame -3 Hits
gi|322758              |______________                                    
gi|6755634             |       _______                                    
gi|6755636             |       _______                                    
gi|6755642             |       _______                                    
                        __________________________________________________
Query sequence:        |                 |                 |              | 138
                       0                50               100




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.



to_Entrezto_Relatedto_Related >gi|7008011|dbj|BAA90878.1|  (AB031228) PsAD2 [Pisum sativum]
            Length = 98

Frame  2 hits (HSPs):                              ______________________ 
                        __________________________________________________
Database sequence:     |         |         |          |         |         | 98
                       0        20        40         60        80

  Plus Strand HSPs:

 Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 23/43 (53%), Positives = 29/43 (67%), Frame = +2

Query:     5 GGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGNFDASTRNY 133
             G  + + T N  GG  +NNSG F G+GNGG+  GN DAST+NY
Sbjct:    54 GDRKKYRTTNNVGGRTVNNSGTFHGNGNGGYTEGNSDASTKNY 96


to_Entrezto_Relatedto_Related >gi|7507106|pir||T24470  hypothetical protein T04F8.8 - Caenorhabditis elegans
            >gi|3924841|emb|CAA91483.1| (Z66565) cDNA EST yk121f1.5 comes from
            this gene~cDNA EST yk145f11.3 comes from this gene~cDNA EST
            yk150b6.3 comes from this gene~cDNA EST yk150b6.5 comes from this
            gene~cDNA EST yk171h2.5 comes from this gene~cDNA EST yk205f7.3
            comes from this gene~cD>
            Length = 165

Frame  2 hits (HSPs):            ___________                              
                        __________________________________________________
Database sequence:     |              |               |              |    | 165
                       0             50             100            150

  Plus Strand HSPs:

 Score = 91 (32.0 bits), Expect = 0.0021, P = 0.0021
 Identities = 18/36 (50%), Positives = 20/36 (55%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGN 109
             GGG      N+YG G   NN G F  +GNGG  GGN
Sbjct:    31 GGGGYNRPMNSYGNG--YNNGGGFNNYGNGGGFGGN 64


to_Entrezto_Relatedto_Related >gi|7488739|pir||T09610  environmental stress-induced protein - alfalfa
            (fragment) >gi|166376|gb|AAA32652.1| (M74191) environmental
            stress-induced protein [Medicago sativa]
            Length = 59

Frame  2 hits (HSPs):     ____________________________________________    
                        __________________________________________________
Database sequence:     |                |                |                | 59
                       0               20               40

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.29, P = 0.25
 Identities = 16/44 (36%), Positives = 21/44 (47%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFIGGNFDASTRN 130
             GGG   H  ++Y  GG   N+ G   GHG  G  GG+    T +
Sbjct:    12 GGGSYNHGGDSYHHGGGGYNHGGGHGGHGGHGGHGGHGAVQTED 55

 Score = 58 (20.4 bits), Expect = 6.9, P = 1.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGG 106
             GGG       N+GGG + N+ G+   HG GG+  G
Sbjct:     4 GGGSNY----NHGGG-SYNHGGDSYHHGGGGYNHG 33


to_Entrezto_Relatedto_Related >gi|7442088|pir||T09527  glycine-rich protein 1 - chickpea
            >gi|3286723|emb|CAA07551.1| (AJ007556) glycine-rich protein 1
            [Cicer arietinum]
            Length = 148

Frame  2 hits (HSPs):               _________________________________     
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 80 (28.2 bits), Expect = 0.38, P = 0.32
 Identities = 20/47 (42%), Positives = 23/47 (48%), Frame = +2

Query:     2 GGGXEXHATNNYG--GGPAINNSGNF-QGHGNGGFIGGNFDASTRNY 133
             GGG   H   NYG  GG   +  GN+  G GN G  GGN+     NY
Sbjct:    59 GGGNYGHGGGNYGNGGGNYGHGGGNYGNGGGNYGHGGGNYGHGGGNY 105

 Score = 79 (27.8 bits), Expect = 0.54, P = 0.41
 Identities = 19/47 (40%), Positives = 22/47 (46%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFI--GGNFDASTRNY 133
             GGG   +   NYG GG    N G   GHG G +   GGN+     NY
Sbjct:    38 GGGNYGNGGGNYGQGGGNYGNGGGNYGHGGGNYGNGGGNYGHGGGNY 84

 Score = 79 (27.8 bits), Expect = 0.54, P = 0.41
 Identities = 19/47 (40%), Positives = 22/47 (46%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFI--GGNFDASTRNY 133
             GGG   +   NYG GG    N G   GHG G +   GGN+     NY
Sbjct:    52 GGGNYGNGGGNYGHGGGNYGNGGGNYGHGGGNYGNGGGNYGHGGGNY 98

 Score = 75 (26.4 bits), Expect = 2.3, P = 0.90
 Identities = 18/46 (39%), Positives = 20/46 (43%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNG----GFIGGNFDASTR 127
             GGG   H   NYG G     +G   GHG G    G  GG +  S R
Sbjct:    87 GGGNYGHGGGNYGHGGGNYGNGGHGGHGGGYCGNGCCGGYYSGSCR 132

 Score = 73 (25.7 bits), Expect = 4.7, P = 0.99
 Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = +2

Query:    35 YGGGPAINNSGNF-QGHGNGGFIGGNFDASTRNY 133
             YGGG   N  GN+ QG GN G  GGN+     NY
Sbjct:    37 YGGGNYGNGGGNYGQGGGNYGNGGGNYGHGGGNY 70

 Score = 71 (25.0 bits), Expect = 8.6, P = 1.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFIGG 106
             GGG   H   NYG GG    + G   GHG G +  G
Sbjct:    73 GGGNYGHGGGNYGNGGGNYGHGGGNYGHGGGNYGNG 108


to_Entrezto_Relatedto_Related >gi|3893085|emb|CAA10192.1|  (AJ012829) glycine-rich protein 2 [Cicer arietinum]
            Length = 208

Frame  2 hits (HSPs):            ____________________________________     
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 208
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 0.44, P = 0.36
 Identities = 19/44 (43%), Positives = 21/44 (47%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFIGGNFDASTRNY 133
             GGG   +   NYG GG    N G   GHG  G  GGN+     NY
Sbjct:    42 GGGYPSNGGGNYGHGGGNYGNGGGNYGHGGNG--GGNYGNGGGNY 84

 Score = 82 (28.9 bits), Expect = 0.44, P = 0.36
 Identities = 21/50 (42%), Positives = 24/50 (48%), Frame = +2

Query:     2 GGGXEXHATN---NYG-GGPAINNSGNFQGHGNGGFI--GGNFDASTRNY 133
             GGG   H  N   NYG GG +  N G   GHG G +   GGN+     NY
Sbjct:   111 GGGNYGHGGNGGGNYGNGGGSYGNGGGNYGHGGGNYGNGGGNYGHGGGNY 160

 Score = 76 (26.8 bits), Expect = 3.7, P = 0.98
 Identities = 20/46 (43%), Positives = 23/46 (50%), Frame = +2

Query:     2 GGGXEXHATN---NYG-GGPAINNSGNFQGHGNGGFIGGNFDASTRNY 133
             GGG   H  N   NYG GG    + G   GHG+ G  GGN+     NY
Sbjct:    63 GGGNYGHGGNGGGNYGNGGGNYGHGGGNYGHGSNG--GGNYGNGGGNY 108

 Score = 75 (26.4 bits), Expect = 5.4, P = 1.0
 Identities = 18/36 (50%), Positives = 21/36 (58%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGF-IGGN 109
             GGG   H +N  GGG   N  GN+ GHG G +  GGN
Sbjct:    87 GGGNYGHGSN--GGGNYGNGGGNY-GHGGGNYGHGGN 120

 Score = 74 (26.0 bits), Expect = 7.3, P = 1.0
 Identities = 18/38 (47%), Positives = 21/38 (55%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGH-GNGGFIGGN 109
             GGG   H   NYG GG    N G+  G+ GNGG  GG+
Sbjct:   149 GGGNYGHGGGNYGHGGGYPGNGGHGGGYPGNGGHGGGH 186


to_Entrezto_Relatedto_Related >gi|7442080|pir||T00799  hypothetical protein F24L7.17 - Arabidopsis thaliana
            >gi|2914704|gb|AAC04494.1| (AC003974) unknown protein [Arabidopsis
            thaliana]
            Length = 201

Frame  2 hits (HSPs):                                      _________      
                        __________________________________________________
Database sequence:     |            |           |            |           || 201
                       0           50         100          150         200

  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 1.2, P = 0.71
 Identities = 17/35 (48%), Positives = 17/35 (48%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGG 106
             GGG    A    GGG  I   G F G G GGF GG
Sbjct:   142 GGGYGGGAGGGLGGGGGIGGGGGFGGGGGGGFGGG 176


to_Entrezto_Relatedto_Related >gi|1170023|sp|Q09134|GRPA_MEDFA  ABSCISIC ACID AND ENVIRONMENTAL STRESS
            INDUCIBLE PROTEIN >gi|99977|pir||S18345 environmental stress
            protein - alfalfa >gi|19547|emb|CAA42554.1| (X59930) environmental
            stress and abscisic acid  inducible protein [Medicago sativa subsp.
            falcata]
            Length = 159

Frame  2 hits (HSPs):                    _______________________          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150
__________________

Annotated Domains:
   DOMO                 DM02677:                                 24..86
   DOMO                 DM02677:                                 88..140
   Entrez               Domain: 7 X 12 AA REPEATS OF G-G-G-Y-N-H 38..135
   Entrez               Repetitive region: 1.                    38..49
   Entrez               Repetitive region: 2.                    50..61
   Entrez               Repetitive region: 3.                    63..74
   Entrez               Repetitive region: 4.                    77..88
   Entrez               Repetitive region: 5.                    91..102
   Entrez               Repetitive region: 6.                    105..116
   Entrez               Repetitive region: 7.(APPROXIMATE).      124..135
   PRODOM               PD026227: CORA(1) GRPA(1) O81929(1)      1..35
   PRODOM               PD045512: GRPA_MEDFA                     134..158
__________________


  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 1.4, P = 0.76
 Identities = 16/45 (35%), Positives = 20/45 (44%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFIGGNFDASTRNY 133
             GGG   +    Y  GG   NN G    HG GG+ GG ++     Y
Sbjct:    83 GGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNGGGYNHGGGGY 127

 Score = 72 (25.3 bits), Expect = 7.7, P = 1.0
 Identities = 15/35 (42%), Positives = 17/35 (48%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGG 106
             GGG       N+GGG   NN G    HG GG+  G
Sbjct:    57 GGGYNNGGGYNHGGG-GYNNGGGGYNHGGGGYNNG 90


to_Entrezto_Relatedto_Related >gi|82087|pir||S19774  glycine-rich protein - tomato (fragment)
            >gi|19322|emb|CAA42538.1| (X59883) glycine-rich protein
            [Lycopersicon esculentum]
            Length = 82

Frame  2 hits (HSPs):      _________________________                      
                        __________________________________________________
Database sequence:     |           |           |           |            | | 82
                       0          20          40          60           80

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 2.2, P = 0.89
 Identities = 15/42 (35%), Positives = 18/42 (42%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGNFDASTR 127
             GGG        YGGG      G  +G G GG+ GG +    R
Sbjct:     7 GGGRREGGGGGYGGGGGYGG-GRREG-GGGGYGGGGYGGGRR 46


to_Entrezto_Relatedto_Related >gi|4581180|gb|AAD24663.1|AC006220_19  (AC006220) putative glycine-rich protein
            [Arabidopsis thaliana]
            Length = 154

Frame  2 hits (HSPs):                    _____________                    
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150

  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 2.6, P = 0.93
 Identities = 16/37 (43%), Positives = 19/37 (51%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGH--GNGGFIGG 106
             GGG   H  +N GGG  ++  G   GH  G GG  GG
Sbjct:    55 GGGGHGHGGHNGGGGHGLDGYGGGGGHYGGGGGHYGG 91


to_Entrezto_Relatedto_Related >gi|82696|pir||S20846  glycine-rich protein - maize >gi|22293|emb|CAA43431.1|
            (X61121) glycine-rich protein [Zea mays]
            Length = 155

Frame  2 hits (HSPs):                                     ____________    
Annotated Domains:      ____________________________                      
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         3..85
   Entrez               domain: ribonucleoprotein repeat homolog 9..87
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 49..56
__________________


  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 3.7, P = 0.97
 Identities = 15/36 (41%), Positives = 17/36 (47%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGN 109
             GGG        YGGG      G + G G GG+ GGN
Sbjct:   107 GGGGRRDGGGGYGGGGGYGGGGGYGG-GGGGYGGGN 141


to_Entrezto_Relatedto_Related >gi|3781|emb|CAA27004.1|  (X03245) ded1 protein (aa 1-112) (1822 is 2nd base in
            codon) [Saccharomyces cerevisiae]
            Length = 113

Frame  2 hits (HSPs):                         ______________              
                        __________________________________________________
Database sequence:     |                     |                     |      | 113
                       0                    50                   100

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 4.2, P = 0.98
 Identities = 15/31 (48%), Positives = 18/31 (58%), Frame = +2

Query:    38 GGGPAINNSGNFQGHGNGGFIGGNFDASTRN 130
             GGG   +N+    G+GNGGF GGN   S  N
Sbjct:    52 GGGSFFSNNRR-GGYGNGGFFGGNNGGSRSN 81


to_Entrezto_Relatedto_Related >gi|3021529|emb|CAA76339.1|  (Y16641) hnRNP protein [Rattus norvegicus]
            Length = 193

Frame  2 hits (HSPs):                          _____________              
Frame  1 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 6.3, P = 1.0
 Identities = 20/47 (42%), Positives = 22/47 (46%), Frame = +2

Query:     2 GGGXEXHATNNYGGG-PAINNSGNFQGHGNGGFIG----GNFDASTRNY 133
             GGG    +   YGGG P   N G   G G GG+ G    GNF     NY
Sbjct:    92 GGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGG--NY 138

 Score = 67 (23.6 bits), Expect = 4.3, Sum P(2) = 0.99
 Identities = 14/35 (40%), Positives = 18/35 (51%), Frame = +2

Query:    32 NYGGGPAINNSGNFQGHGNG-GFIGGNFDASTRNY 133
             NYGGGP  ++ G + G G G G  GG +      Y
Sbjct:    90 NYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGY 124

 Score = 38 (13.4 bits), Expect = 4.3, Sum P(2) = 0.99
 Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +1

Query:     1 GGGGGXSR 24
             GGGGG SR
Sbjct:    64 GGGGGGSR 71


to_Entrezto_Relatedto_Related >gi|103964|pir||A43782  keratin, type II - eastern newt (fragment)
            Length = 461

Frame  2 hits (HSPs):                                           ______    
Annotated Domains:                                          __            
                        __________________________________________________
Database sequence:     |                |               |               | | 461
                       0              150             300             450
__________________

Annotated Domains:
   PROSITE              IF: Intermediate filaments signature.    340..348
__________________


  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 4.7, P = 0.99
 Identities = 17/44 (38%), Positives = 24/44 (54%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGNFDASTRNY 133
             GGG    +T  YG G  + + G F G  +GG +GG+  +ST  Y
Sbjct:   378 GGGYG--STGEYGSGSGLQHGGGFSG-SSGGIVGGSRFSSTSGY 418


to_Entrezto_Relatedto_Related >gi|2370339|emb|CAA04655.1|  (AJ001295) cytokeratin type II [Notophthalmus
            viridescens]
            Length = 461

Frame  2 hits (HSPs):                                           ______    
                        __________________________________________________
Database sequence:     |                |               |               | | 461
                       0              150             300             450

  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 4.7, P = 0.99
 Identities = 17/44 (38%), Positives = 24/44 (54%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGNFDASTRNY 133
             GGG    +T  YG G  + + G F G  +GG +GG+  +ST  Y
Sbjct:   378 GGGYG--STGEYGSGSGLQHGGGFSG-SSGGIVGGSRFSSTSGY 418


to_Entrezto_Relatedto_Related >gi|322758|pir||PQ0477  pistil extensin-like protein (clone pMG09) - common
            tobacco  (fragment)
            Length = 80

Frame -3 hits (HSPs):                          _________________________  
                        __________________________________________________
Database sequence:     |           |            |           |             | 80
                       0          20           40          60

  Minus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 5.3, P = 0.99
 Identities = 17/39 (43%), Positives = 19/39 (48%), Frame = -3

Query:   114 SKLPPIKPPLPCPW-KLPLLFIAGPPP*LLVA*XSXPPP 1
             S  PPIKPP P P  + P    A PPP +  A     PP
Sbjct:    39 SAKPPIKPPSPSPAAQPPATQRATPPPAMQRAPPLSQPP 77


to_Entrezto_Relatedto_Related >gi|9757863|dbj|BAB08497.1|  (AB010073) gene_id:MFB13.20~unknown protein
            [Arabidopsis thaliana]
            Length = 77

Frame  2 hits (HSPs):               ______________________________        
                        __________________________________________________
Database sequence:     |            |            |            |           | 77
                       0           20           40           60

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 5.3, P = 0.99
 Identities = 17/45 (37%), Positives = 24/45 (53%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHG-NGG-FIG-GNFDASTRNY 133
             GGG +       GGG A   +GN    G NGG +I  G F+++ + Y
Sbjct:    21 GGGGQSSGGGKSGGGGA--GAGNMVAPGTNGGAYISRGGFESNPQGY 65


to_Entrezto_Relatedto_Related >gi|7503186|pir||T22078  hypothetical protein F41E7.5 - Caenorhabditis elegans
            >gi|3876938|emb|CAA92128.1| (Z68106) Similarity with collagen Gxx
            repeats~cDNA EST yk58f5.5 comes from this gene~cDNA EST yk93f5.5
            comes from this gene~cDNA EST yk58f5.3 comes from this gene~cDNA
            EST yk443h10.3 comes from this gene~cDNA EST yk443h10.5 comes from
            this gene~cDNA ES>
            Length = 112

Frame  2 hits (HSPs):                   ___________________               
                        __________________________________________________
Database sequence:     |                     |                      |     | 112
                       0                    50                    100

  Plus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 5.5, P = 1.0
 Identities = 18/42 (42%), Positives = 20/42 (47%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAIN---NSGNFQGHG----NGGFIGG 106
             GGG        +GGGP  N     G F G+G    NGGF GG
Sbjct:    38 GGGPGQFGRGGFGGGPGSNYGPGRGGFGGNGGFGGNGGFGGG 79


to_Entrezto_Relatedto_Related >gi|121644|sp|P17816|GRP_HORVU  GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN
            PRECURSOR >gi|100582|pir||S10334 glycine-rich protein precursor -
            barley >gi|295808|emb|CAA36811.1| (X52580) glycine-rich protein
            [Hordeum vulgare]
            Length = 200

Frame  2 hits (HSPs):                                    __________       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150
__________________

Annotated Domains:
   DOMO                 DM03511: PROTEINRICH                     1..199
   PRODOM               PD046272: GRP_HORVU                      171..199
__________________


  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 6.7, P = 1.0
 Identities = 15/35 (42%), Positives = 16/35 (45%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGG 106
             GGG   H     GGG      G + GHG GG  GG
Sbjct:   135 GGGGGYHGHGGEGGGGYGGGGGGYPGHGGGGGHGG 169


to_Entrezto_Relatedto_Related >gi|7299784|gb|AAF54963.1|  (AE003701) CG16901 gene product [Drosophila
            melanogaster]
            Length = 65

Frame  2 hits (HSPs):           __________________________                
                        __________________________________________________
Database sequence:     |              |               |              |    | 65
                       0             20              40             60

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 6.9, P = 1.0
 Identities = 17/35 (48%), Positives = 17/35 (48%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQG-HGNGGFIGG 106
             GGG E    N YGGG   N  G   G  G GG  GG
Sbjct:    12 GGGFEG---NGYGGGGGGNMGGGRGGPRGGGGPKGG 44


to_Entrezto_Relatedto_Related >gi|4581173|gb|AAD24656.1|AC006220_12  (AC006220) putative glycine-rich protein
            [Arabidopsis thaliana]
            Length = 127

Frame  2 hits (HSPs):                         _______________             
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 7.4, P = 1.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINN-SGNFQGH--GNGGFIGG 106
             GGG   H  +N GGG  ++   G   GH  G GG  GG
Sbjct:    57 GGGGHGHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGG 94


to_Entrezto_Relatedto_Related >gi|7498539|pir||T28938  hypothetical protein F07C4.7 - Caenorhabditis elegans
            >gi|10864324|gb|AAG24037.1| (U80023) Hypothetical protein F07C4.7
            [Caenorhabditis elegans]
            Length = 180

Frame  2 hits (HSPs):                 __________                          
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150

  Plus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 7.7, P = 1.0
 Identities = 17/36 (47%), Positives = 19/36 (52%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGGN 109
             GG    +  NN GGG   N +G F G G GG  GGN
Sbjct:    52 GGFGGNNGWNNGGGG--FNGNGGFNGGGRGGGRGGN 85


to_Entrezto_Relatedto_Related >gi|138021|sp|P08234|VG38_BPM1  RECEPTOR RECOGNIZING PROTEIN (PROTEIN GP38)
            >gi|76093|pir||TLBPM1 tail fiber protein gp38 - phage M1
            >gi|15116|emb|CAA29161.1| (X05676) gene 38 (AA 1-262)
            [Bacteriophage M1]
            Length = 262

Frame  2 hits (HSPs):                          __________                 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 262
                       0        50      100       150      200       250
__________________

Annotated Domains:
   DOMO                 DM08381: PHAGEOX2TAILFIBERPROTEINGP38    1..195
   PRODOM               PD015765: VG38(4) O80267(1) O80270(1)    1..115
   PRODOM               PD075763: O80267(1) O80270(1) VG38(1)    117..141
   PRODOM               PD053290: O80267(1) O80270(1) VG38(1)    192..261
__________________


  Plus Strand HSPs:

 Score = 75 (26.4 bits), Expect = 8.1, P = 1.0
 Identities = 21/48 (43%), Positives = 23/48 (47%), Frame = +2

Query:     5 GGXEXHAT-NNYGGGPAINNSGNFQGHGNGGFIGGNFDASTRNY*LIYV 148
             G    H   NN GG   INN G   G G GG  GG ++AS   Y   YV
Sbjct:   126 GSAGGHCIQNNIGGRLRINNGGAIAGGGGGGG-GGYWNASITRYRYRYV 173


to_Entrezto_Relatedto_Related >gi|1710623|sp|P51989|RO21_XENLA  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A2
            HOMOLOG 1 (HNRNP A2(A)) >gi|542647|pir||S40775 ribonucleoprotein -
            African clawed frog >gi|214741|gb|AAA49948.1| (L02954)
            ribonucleoprotein [Xenopus laevis]
            Length = 346

Frame  2 hits (HSPs):                                          ______     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                     |                     |      | 346
                       0                   150                   300
__________________

Annotated Domains:
   BLOCKS               BL00030A: Eukaryotic  RNA-binding region 102..120
   BLOCKS               BL00030B: Eukaryotic  RNA-binding region 141..150
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         4..89
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         91..176
   Entrez               Domain: RNA-BINDING (RNP2) (BY SIMILARIT 11..16
   Entrez               Domain: RNA-BINDING (RNP1) (POTENTIAL).  50..57
   Entrez               Domain: RNA-BINDING (RNP2) (BY SIMILARIT 102..107
   Entrez               Domain: RNA-BINDING (RNP1) (POTENTIAL).  141..148
   Entrez               Domain: GLY-RICH.                        192..346
   Entrez               Domain: NUCLEAR TARGETING SEQUENCE (BY S 297..340
   PFAM                 rrm: RNA recognition motif. (a.k.a. RRM, 11..81
   PFAM                 rrm: RNA recognition motif. (a.k.a. RRM, 102..172
   PRODOM               PD020858: ROA1(14) PABP(12) PAB1(8)      12..48
   PRODOM               PD015006: ROA1(7) CABA(2) O88311(2)      50..89
   PRODOM               PD020858: ROA1(14) PABP(12) PAB1(8)      103..138
   PRODOM               PD186161: ROA1(7)                        140..164
   PRODOM               PD019419: O88569(1) ROA2(1) RO21(1)      166..200
   PRODOM               PD018713: O88569(1) ROA2(1) RO21(1)      291..316
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 141..148
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 50..57
__________________


  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 8.7, P = 1.0
 Identities = 18/40 (45%), Positives = 23/40 (57%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNF-QGHGNGGFI--GGNF 112
             GGG + +   NYGGG   N+ GN+ Q   N G +  GGNF
Sbjct:   272 GGGYDNYGGGNYGGGGNYNDFGNYNQQSSNYGPMKSGGNF 311


to_Entrezto_Related >gi|6755634  ref|NP_035601.1| small proline-rich protein 2E [Mus musculus]
            >gi|3093365|emb|CAA06592.1| (AJ005563) SPR2E protein [Mus musculus]
            Length = 76

Frame -3 hits (HSPs):                                       ___________   
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 9.0, P = 1.0
 Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = -3

Query:   111 KLPPIKPPLPCPWKLP 64
             K PP++PP PC  K P
Sbjct:    57 KCPPVQPPPPCQQKCP 72


to_Entrezto_Related >gi|6755636  ref|NP_035602.1| small proline-rich protein 2F [Mus musculus]
            >gi|3093367|emb|CAA06593.1| (AJ005564) SPR2F protein [Mus musculus]
            Length = 76

Frame -3 hits (HSPs):                                       ___________   
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 9.0, P = 1.0
 Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = -3

Query:   111 KLPPIKPPLPCPWKLP 64
             K PP++PP PC  K P
Sbjct:    57 KCPPVQPPPPCQQKCP 72


to_Entrezto_Related >gi|6755642  ref|NP_035605.1| small proline-rich protein 2I [Mus musculus]
            >gi|3093373|emb|CAA06596.1| (AJ005567) SPR2I protein [Mus musculus]
            Length = 76

Frame -3 hits (HSPs):                                       ___________   
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 9.0, P = 1.0
 Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = -3

Query:   111 KLPPIKPPLPCPWKLP 64
             K PP++PP PC  K P
Sbjct:    57 KCPPVQPPPPCQQKCP 72


to_Entrezto_Relatedto_Related >gi|1710625|sp|P51968|RO31_XENLA  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A3
            HOMOLOG 1 (HNRNP A3(A)) >gi|214745|gb|AAA49949.1| (L02956)
            ribonucleoprotein [Xenopus laevis]
            Length = 373

Frame  2 hits (HSPs):                                       _______       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                    |         | 373
                       0                 150                  300
__________________

Annotated Domains:
   BLOCKS               BL00030A: Eukaryotic  RNA-binding region 29..47
   BLOCKS               BL00030B: Eukaryotic  RNA-binding region 159..168
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         22..107
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         109..194
   Entrez               Domain: RNA-BINDING (RNP2) (BY SIMILARIT 29..34
   Entrez               Domain: RNA-BINDING (RNP1) (POTENTIAL).  68..75
   Entrez               Domain: RNA-BINDING (RNP2) (BY SIMILARIT 120..125
   Entrez               Domain: RNA-BINDING (RNP1) (POTENTIAL).  159..166
   Entrez               Domain: GLY-RICH.                        207..373
   PFAM                 rrm: RNA recognition motif. (a.k.a. RRM, 29..99
   PFAM                 rrm: RNA recognition motif. (a.k.a. RRM, 120..190
   PRODOM               PD027703: RO31(1) RO32(1)                1..28
   PRODOM               PD020858: ROA1(14) PABP(12) PAB1(8)      30..66
   PRODOM               PD015006: ROA1(7) CABA(2) O88311(2)      68..107
   PRODOM               PD187707: RO31(1) RO32(1) ROA3(1)        110..156
   PRODOM               PD186161: ROA1(7)                        158..182
   PRODOM               PD027702: RO31(1) RO32(1) ROA3(1)        184..215
   PRODOM               PD018727: RO31(1) RO32(1) ROA3(1)        312..334
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 159..166
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 68..75
__________________


  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 9.6, P = 1.0
 Identities = 17/46 (36%), Positives = 19/46 (41%), Frame = +2

Query:     5 GGXEXHATNNYGGGPAINNSGNFQGHGNGGFIG----GNFDASTRN 130
             GG   +    YGG P   N G   G G GG+ G    GNF     N
Sbjct:   273 GGGPGYGGRGYGGSPGYGNQGGGYGGGGGGYDGYNESGNFGGGNYN 318


to_Entrezto_Relatedto_Related >gi|542649|pir||S40777  heterogeneous ribonuclear particle protein A3 - African
            clawed frog
            Length = 373

Frame  2 hits (HSPs):                                       _______       
Annotated Domains:        ________________________                        
                        __________________________________________________
Database sequence:     |                   |                    |         | 373
                       0                 150                  300
__________________

Annotated Domains:
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         22..107
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         109..194
   Entrez               domain: ribonucleoprotein repeat homolog 28..94
   Entrez               domain: ribonucleoprotein repeat homolog 119..185
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 159..166
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 68..75
__________________


  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 9.6, P = 1.0
 Identities = 17/46 (36%), Positives = 19/46 (41%), Frame = +2

Query:     5 GGXEXHATNNYGGGPAINNSGNFQGHGNGGFIG----GNFDASTRN 130
             GG   +    YGG P   N G   G G GG+ G    GNF     N
Sbjct:   273 GGGPGYGGRGYGGSPGYGNQGGGYGGGGGGYDGYNESGNFGGGNYN 318


to_Entrezto_Relatedto_Related >gi|1710627|sp|P51991|ROA3_HUMAN  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A3
            (HNRNP A3) (D10S102)
            Length = 379

Frame  2 hits (HSPs):                                       _______       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00030A: Eukaryotic  RNA-binding region 37..55
   BLOCKS               BL00030B: Eukaryotic  RNA-binding region 76..85
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         30..115
   DOMO                 DM00012: RIBONUCLEOPROTEINREPEAT         117..202
   Entrez               Domain: RNA-BINDING (RNP2) (BY SIMILARIT 37..42
   Entrez               Domain: RNA-BINDING (RNP1) (POTENTIAL).  76..83
   Entrez               Domain: RNA-BINDING (RNP2) (BY SIMILARIT 128..133
   Entrez               Domain: RNA-BINDING (RNP1) (POTENTIAL).  167..174
   Entrez               Domain: GLY-RICH.                        211..379
   PFAM                 rrm: RNA recognition motif. (a.k.a. RRM, 37..107
   PFAM                 rrm: RNA recognition motif. (a.k.a. RRM, 128..198
   PRODOM               PD055998: ROA3_HUMAN                     1..36
   PRODOM               PD020858: ROA1(14) PABP(12) PAB1(8)      38..74
   PRODOM               PD015006: ROA1(7) CABA(2) O88311(2)      76..116
   PRODOM               PD187707: RO31(1) RO32(1) ROA3(1)        118..164
   PRODOM               PD186161: ROA1(7)                        166..190
   PRODOM               PD027702: RO31(1) RO32(1) ROA3(1)        192..223
   PRODOM               PD018727: RO31(1) RO32(1) ROA3(1)        326..351
   PROSITE              RNP_1: Eukaryotic putative RNA-binding r 76..83
__________________


  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 9.8, P = 1.0
 Identities = 21/47 (44%), Positives = 23/47 (48%), Frame = +2

Query:     2 GGGXEXHATNNYGGG-PAINNSGNFQGHGNGGFIG----GNFDASTRNY 133
             G G    +   YGGG P   N G   G G GG+ G    GNFD S  NY
Sbjct:   278 GSGPGYSSRGGYGGGGPGYGNQGGGYGGGVGGYDGYNEGGNFDGS--NY 324


to_Entrezto_Relatedto_Related >gi|729185|sp|Q07202|CORA_MEDSA  COLD AND DROUGHT-REGULATED PROTEIN CORA
            >gi|7488753|pir||T09592 protein corA, cold- and drought-regulated -
            alfalfa >gi|289123|gb|AAA99833.1| (L03708) corA gene product
            [Medicago sativa]
            Length = 204

Frame  2 hits (HSPs):                 _____________                       
Annotated Domains:         _______________________________________________
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200
__________________

Annotated Domains:
   DOMO                 DM02677:                                 37..110
   DOMO                 DM02677:                                 112..203
   Entrez               Domain: 7 X 6 AA REPEATS OF Y-N-H-G-G-G. 54..176
   Entrez               Repetitive region: 1-1.                  54..59
   Entrez               Repetitive region: 1-2.                  65..70
   Entrez               Repetitive region: 1-3.                  71..76
   Entrez               Repetitive region: 1-4.                  78..83
   Entrez               Repetitive region: 1-5.                  85..90
   Entrez               Repetitive region: 1-6.                  164..169
   Entrez               Repetitive region: 1-7.                  171..176
   Entrez               Domain: 11 X 3 AA REPEATS OF H-G-G.      98..192
   Entrez               Repetitive region: 2-1.                  98..100
   Entrez               Repetitive region: 2-2.                  101..103
   Entrez               Repetitive region: 2-3.                  112..114
   Entrez               Repetitive region: 2-4.                  115..117
   Entrez               Repetitive region: 2-5.                  126..128
   Entrez               Repetitive region: 2-6.                  129..131
   Entrez               Repetitive region: 2-7.                  178..180
   Entrez               Repetitive region: 2-8.                  181..183
   Entrez               Repetitive region: 2-9.                  184..186
   Entrez               Repetitive region: 2-10.                 187..189
   Entrez               Repetitive region: 2-11.                 190..192
   PRODOM               PD026227: CORA(1) GRPA(1) O81929(1)      17..48
   PRODOM               PD046240: CORA_MEDSA                     132..160
__________________


  Plus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 10., P = 1.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Frame = +2

Query:     2 GGGXEXHATNNYGGGPAINNSGNFQGHGNGGFIGG 106
             GGG       N+GGG   N  G +  HG GG+ GG
Sbjct:    62 GGGYNHGGGYNHGGGGYHNGGGGYN-HGGGGYNGG 95

 Score = 73 (25.7 bits), Expect = 10., P = 1.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Frame = +2

Query:     2 GGGXEXHATNNYG-GGPAINNSGNFQGHGNGGFIGG 106
             GGG   +    Y  GG   N  G   GHG GG+ GG
Sbjct:    74 GGGGYHNGGGGYNHGGGGYNGGGGHGGHGGGGYNGG 109


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.99

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.383   0.175   0.678  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.349   0.160   0.540  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.350   0.156   0.626  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.346   0.150   0.535  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.365   0.163   0.581  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.364   0.169   0.624  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      137       121       10.  71 3  12 22  0.098   33
                                                    29  0.11    35
   +2      0      137       122       10.  71 3  12 22  0.099   33
                                                    29  0.11    35
   +1      0      137       122       10.  71 3  12 22  0.099   33
                                                    29  0.11    35
   -1      0      137       122       10.  71 3  12 22  0.099   33
                                                    29  0.11    35
   -2      0      137       122       10.  71 3  12 22  0.099   33
                                                    29  0.11    35
   -3      0      137       122       10.  71 3  12 22  0.099   33
                                                    29  0.11    35


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  30
  No. of states in DFA:  593 (58 KB)
  Total size of DFA:  158 KB (192 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  122.27u 1.16s 123.43t  Elapsed: 00:00:21
  Total cpu time:  122.30u 1.19s 123.49t  Elapsed: 00:00:21
  Start:  Mon Oct  1 21:10:22 2001   End:  Mon Oct  1 21:10:43 2001



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000