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Prevotella intermedia Search Results

Record: 1 of 1  
MiniMap IGR0153 IGR0156 IGR0154 IGR0151 IGR0152 IGR0155 PI0200 PI0196 PI0203 ptaA, - PI0199 kbl, - PI0194 ackA, - PI0197 PI0202 PI0201 PI0198 PI0195 PI0200 PI0196 PI0203 ptaA, - PI0199 kbl, - PI0194 ackA, - PI0197 PI0202 PI0201 PI0198 PI0195 Type: tandem, Name: PI-TR-134 - 134 PI0200 PI0196 PI0203 ptaA, - PI0199 kbl, - PI0194 ackA, - PI0197 PI0202 PI0201 PI0198 PI0195


Gene ID:PI0198

DNA Molecule Name:
1  

GenBank ID:


Gene Name:


Definition:
hypothetical protein

Cellular Location:
Periplasm, Extracellular [Evidence]

Gene Start:
190859

Gene Stop:
191116

Gene Length:
258

Molecular Weight*:
9544

pI*:


Net Charge*:


EC:
 

Functional Class:
Hypothetical  

Gene Ontology:

Pathway: pathway table

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search
PI0198 has no significant similarity (BLAST p-value < 1e-5) to a Porphyromonas gingivalis W83 gene.

PI0198 has no significant similarity (BLAST p-value < 1e-5) to a Bacteroides thetaiotaomicron VPI-5482 gene.

There are no significant matches to the NR database at this time.


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.


***** No hits found ******




InterPro Summary:  InterProScan
























noIPR
unintegrated		






unintegrated





signalp
[1-29]? NA signalp signal-peptide
signal-peptide




tmhmm
[14-34]? NA tmhmm transmembrane_regions[55-75]? NA tmhmm transmembrane_regions
transmembrane_regions












COGS Summary:  COGS Search
No hits to the COGs database.


Blocks Summary:  Blocks Search



ProDom Summary:  Protein Domain Search


Paralogs:  Local Blast Search
PI0198 has no significant similarity (blastp p-value < 1e-03) to any other gene in this genome.


Pfam Summary:  Pfam Search



Structural Feature(s):
Feature Type  Start  Stop
Cleavable N-term signal seq  
1  
15
Transmembrane  
55  
71

Top PDB Hits:
No PDB hits found using the nr database and 5 rounds of Psi-BLAST (E-value < 0.01)

Gene Protein Sequence:

MIVALSMFFSPHSVANFLMLSGLPMRISSAMLSANTLSAALKVLSSSASG
STMRCLFALARAIIWLSKSIVYYIFKMFYVYFAMQR

Gene Nucleotide Sequence:  Sequence Viewer

ATGATAGTAGCCTTGTCAATGTTTTTCAGTCCCCATTCGGTAGCCAACTT
CTTGATGTTGTCAGGGTTACCGATGAGGATTAGCTCTGCGATGTTGTCGG
CTAATACCTTGTCTGCGGCTCTCAAAGTCCTCTCTTCTTCTGCTTCAGGA
AGCACAATGCGTTGCTTGTTTGCTTTGGCACGTGCAATAATCTGGCTTAG
TAAATCCATAGTATATTATATATTTAAAATGTTTTATGTCTATTTTGCGA
TGCAAAGA








    

      
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