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Library:6533 (dbEST ID)
GKC
Library Description
| Organism: | Homo sapiens |
| Developmental stage: | Adult |
| Tissue: | hepatocellular carcinoma |
| Vector: | pBluescript sk(-) |
| Cloning site 1: | EcoRI |
| Cloning site 2: | XhoI |
| Lab host: | SOLR |
Source: Zeguang Han, Chinese National Human Genome Center at Shanghai
Gene Content Analysis
12,922 ESTs from this library were grouped into 3,411 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 5 | 387 |  |
Hs.370995 | Paraoxonase 1. |
| 5 | 387 | |
Hs.369920 | RAP1B, member of RAS oncogene family. |
| 5 | 387 | |
Hs.362728 | 15 kDa selenoprotein. |
| 5 | 387 | |
Hs.352768 | Proteasome (prosome, macropain) subunit, beta type, 1. |
| 5 | 387 | |
Hs.351335 | Transmembrane protein 143. |
| 5 | 387 | |
Hs.3426 | Era G-protein-like 1 (E. coli). |
| 5 | 387 | |
Hs.324844 | Vitamin K epoxide reductase complex, subunit 1. |
| 5 | 387 | |
Hs.3100 | Lysyl-tRNA synthetase. |
| 5 | 387 | |
Hs.301412 | Ubiquitin-fold modifier conjugating enzyme 1. |
| 5 | 387 | |
Hs.28491 | Spermidine/spermine N1-acetyltransferase 1. |
| 5 | 387 | |
Hs.284492 | Transcribed locus. |
| 5 | 387 | |
Hs.272168 | Serine incorporator 3. |
| 5 | 387 | |
Hs.26232 | Mannosidase, alpha, class 2C, member 1. |
| 5 | 387 | |
Hs.254406 | Activator of basal transcription 1. |
| 5 | 387 | |
Hs.243987 | GATA binding protein 4. |
| 5 | 387 | |
Hs.233458 | Nuclear transcription factor Y, gamma. |
| 5 | 387 | |
Hs.207631 | LIM domain 7. |
| 5 | 387 | |
Hs.200600 | Secretory carrier membrane protein 3. |
| 5 | 387 | |
Hs.191346 | Septin 7. |
| 5 | 387 | |
Hs.19025 | Transmembrane protein 60. |
| 5 | 387 | |
Hs.188982 | Solute carrier family 22, member 10. |
| 5 | 387 | |
Hs.188634 | Sorting nexin 1. |
| 5 | 387 | |
Hs.186291 | Hypothetical protein LOC100131110. |
| 5 | 387 | |
Hs.183671 | Tryptophan 2,3-dioxygenase. |
| 5 | 387 | |
Hs.180909 | Peroxiredoxin 1. |
| 5 | 387 | |
Hs.17441 | Collagen, type IV, alpha 1. |
| 5 | 387 | |
Hs.168241 | ATG2 autophagy related 2 homolog B (S. cerevisiae). |
| 5 | 387 | |
Hs.165950 | Fibroblast growth factor receptor 4. |
| 5 | 387 | |
Hs.160786 | Argininosuccinate synthetase 1. |
| 5 | 387 | |
Hs.159509 | Serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2. |
| 5 | 387 | |
Hs.156346 | Topoisomerase (DNA) II alpha 170kDa. |
| 5 | 387 | |
Hs.155829 | TBC1 domain family, member 9B (with GRAM domain). |
| 5 | 387 | |
Hs.148609 | Ubiquitin-conjugating enzyme E2C binding protein. |
| 5 | 387 | |
Hs.145717 | Jumonji domain containing 5. |
| 5 | 387 | |
Hs.13370 | Unc-50 homolog (C. elegans). |
| 5 | 387 | |
Hs.132342 | Lipin 2. |
| 5 | 387 | |
Hs.131686 | ATP-binding cassette, sub-family A (ABC1), member 9. |
| 5 | 387 | |
Hs.1285 | Complement component 8, gamma polypeptide. |
| 5 | 387 | |
Hs.127249 | SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae). |
| 5 | 387 | |
Hs.122926 | Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). |
| 5 | 387 | |
Hs.110637 | Homeobox A10. |
| 5 | 387 | |
Hs.10842 | RAN, member RAS oncogene family. |
| 5 | 387 | |
Hs.104624 | Aquaporin 9. |
| 5 | 387 | |
Hs.102696 | Malignant T cell amplified sequence 1. |
| 4 | 310 | |
Hs.89029 | AN1, ubiquitin-like, homolog (Xenopus laevis). |
| 4 | 310 | |
Hs.878 | Sorbitol dehydrogenase. |
| 4 | 310 | |
Hs.84190 | Solute carrier family 19 (folate transporter), member 1. |
| 4 | 310 | |
Hs.84084 | Amyloid beta precursor protein (cytoplasmic tail) binding protein 2. |
| 4 | 310 | |
Hs.8360 | Chromosome 11 open reading frame 54. |
| 4 | 310 | |
Hs.82045 | Midkine (neurite growth-promoting factor 2). |
| 4 | 310 | |
Hs.81907 | Chromosome 5 open reading frame 33. |
| 4 | 310 | |
Hs.78619 | Gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase). |
| 4 | 310 | |
Hs.77897 | Splicing factor 3a, subunit 3, 60kDa. |
| 4 | 310 | |
Hs.7739 | Haloacid dehalogenase-like hydrolase domain containing 3. |
| 4 | 310 | |
Hs.76224 | EGF-containing fibulin-like extracellular matrix protein 1. |
| 4 | 310 | |
Hs.718468 | CDNA FLJ37090 fis, clone BRACE2017587. |
| 4 | 310 | |
Hs.718414 | Glyoxylate reductase/hydroxypyruvate reductase. |
| 4 | 310 | |
Hs.715571 | Family with sequence similarity 36, member A. |
| 4 | 310 | |
Hs.715513 | Zinc finger CCCH-type containing 15. |
| 4 | 310 | |
Hs.715491 | Splicing factor, arginine/serine-rich 2, interacting protein. |
| 4 | 310 | |
Hs.713997 | Transcribed locus. |
| 4 | 310 | |
Hs.712658 | Transcribed locus. |
| 4 | 310 | |
Hs.711490 | Programmed cell death 4 (neoplastic transformation inhibitor). |
| 4 | 310 | |
Hs.709644 | Nuclear receptor coactivator 4. |
| 4 | 310 | |
Hs.709609 | Tubulin tyrosine ligase-like family, member 5. |
| 4 | 310 | |
Hs.709288 | Chromosome 14 open reading frame 65. |
| 4 | 310 | |
Hs.708182 | RAN binding protein 9. |
| 4 | 310 | |
Hs.708119 | Transcribed locus. |
| 4 | 310 | |
Hs.707091 | Transcribed locus, weakly similar to XP_001500199.1 PREDICTED: similar to LOC614773 protein [Equus caballus]. |
| 4 | 310 | |
Hs.705504 | Transcribed locus, strongly similar to NP_000020.1 angiotensinogen preproprotein [Homo sapiens]. |
| 4 | 310 | |
Hs.703735 | Transcribed locus, strongly similar to XP_510143.2 PREDICTED: corticosteroid binding globulin [Pan troglodytes]. |
| 4 | 310 | |
Hs.703734 | Transcribed locus, strongly similar to NP_006816.2 cytoskeleton-associated protein 4 [Homo sapiens]. |
| 4 | 310 | |
Hs.700112 | Immunoglobulin heavy locus. |
| 4 | 310 | |
Hs.686938 | CDNA clone IMAGE:4794632. |
| 4 | 310 | |
Hs.680924 | Transcribed locus. |
| 4 | 310 | |
Hs.680262 | Transcribed locus. |
| 4 | 310 | |
Hs.676572 | Transcribed locus. |
| 4 | 310 | |
Hs.676538 | Transcribed locus, strongly similar to NP_034607.2 heat shock protein 1 (chaperonin) [Mus musculus]. |
| 4 | 310 | |
Hs.666581 | CDNA FLJ40460 fis, clone TESTI2041947. |
| 4 | 310 | |
Hs.6638 | Myelin expression factor 2. |
| 4 | 310 | |
Hs.661149 | Transcribed locus. |
| 4 | 310 | |
Hs.659345 | Transcribed locus. |
| 4 | 310 | |
Hs.656565 | Phosphatidylinositol glycan anchor biosynthesis, class P. |
| 4 | 310 | |
Hs.655450 | Transcribed locus. |
| 4 | 310 | |
Hs.655285 | ATP-binding cassette, sub-family F (GCN20), member 1. |
| 4 | 310 | |
Hs.655272 | LETM1 domain containing 1. |
| 4 | 310 | |
Hs.654984 | CCR4-NOT transcription complex, subunit 6. |
| 4 | 310 | |
Hs.654964 | Chromosome 16 open reading frame 62. |
| 4 | 310 | |
Hs.654651 | Phosphodiesterase 4D interacting protein. |
| 4 | 310 | |
Hs.647068 | Ras homolog enriched in brain. |
| 4 | 310 | |
Hs.645344 | Transcribed locus, strongly similar to NP_775462.2 ribosomal protein L13A [Rattus norvegicus]. |
| 4 | 310 | |
Hs.644024 | Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4. |
| 4 | 310 | |
Hs.643590 | Absent in melanoma 1. |
| 4 | 310 | |
Hs.642706 | Flavin containing monooxygenase 5. |
| 4 | 310 | |
Hs.636359 | Hypothetical protein KIAA1434. |
| 4 | 310 | |
Hs.612165 | Transcribed locus. |
| 4 | 310 | |
Hs.601513 | Protein phosphatase 1, regulatory (inhibitor) subunit 3E. |
| 4 | 310 | |
Hs.599385 | Transcribed locus. |
| 4 | 310 | |
Hs.592682 | Transcribed locus, weakly similar to NP_608540.1 CG2839 CG2839-PA [Drosophila melanogaster]. |
| 4 | 310 | |
Hs.592074 | Chromosome 16 open reading frame 84. |
Source: NCBI UniGene
EST Sequences
17,736 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2009.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- liver
- liver tumor
- adult
- bulk
Source: NCBI Clone Registry
References
Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. Xu XR, et al., Proc Natl Acad Sci U S A 98, 15089-15094 (2001).