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Dataset Title:  Groundfish Data for U.S. West Coast (2003-2005)
Dataset ID:  nwioosGroundfish
Institution:  NOAA NWFSC
Information:  Summary | Variables | Background | Data Access Form  

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  longitude {
    String _CoordinateAxisType "Lon";
    Float64 actual_range -125.8555, -117.2767;
    String axis "X";
    Float64 colorBarMaximum -115.0;
    Float64 colorBarMinimum -135.0;
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float64 actual_range 32.5708, 48.4525;
    String axis "Y";
    Float64 colorBarMaximum 55.0;
    Float64 colorBarMinimum 30.0;
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  time {
    String _CoordinateAxisType "Time";
    Float64 actual_range 1.0413792e+9, 1.1045376e+9;
    String axis "T";
    Float64 colorBarMaximum 2005.0;
    Float64 colorBarMinimum 2003.0;
    String Description "Year the survey cycle was performed.";
    String ioos_category "Time";
    String long_name "Survey Year";
    String standard_name "time";
    String time_origin "01-JAN-1970 00:00:00";
    String units "seconds since 1970-01-01T00:00:00Z";
  }
  haul_id {
    Float64 actual_range 2.003030016e+11, 2.00503009536e+11;
    String ioos_category "Identifier";
    String long_name "Haul Identifier";
  }
  scientific_name {
    String ioos_category "Taxonomy";
    String long_name "Scientific Name";
  }
  common_name {
    String ioos_category "Taxonomy";
    String long_name "Common Name";
  }
  position_description {
    String Description 
"Type of position reported for the haul, typically the gear track midpoint or 
the vessel track midpoint.";
    String ioos_category "Location";
    String long_name "Position Description";
  }
  catch_range_min {
    Float64 actual_range 0.0, 4530.0;
    Float64 colorBarMaximum 4500.0;
    Float64 colorBarMinimum 0.0;
    String Description "Catch range minimum (catch per unit effort in kilograms per square meter).";
    String ioos_category "Fish Abundance";
    String long_name "Catch Range Min";
    String units "kg km-2";
  }
  catch_range_max {
    Float64 actual_range 0.0, 257606.0;
    Float64 colorBarMaximum 250000.0;
    Float64 colorBarMinimum 0.0;
    String Description "Catch range maximum (catch per unit effort in kilograms per square meter).";
    String ioos_category "Fish Abundance";
    String long_name "Catch Range Max";
    String units "kg km-2";
  }
  map_legend {
    Float64 colorBarMaximum 250000.0;
    Float64 colorBarMinimum 0.0;
    String Description 
"Indicates the catch per unit effort range that characterizes the haul catch 
for a species.  Catch ranges are bounded by whole number standard deviation 
increments.  Zero catch is indicated in a distinct category.";
    String ioos_category "Fish Abundance";
    String long_name "Map Legend";
    String units "kg km-2";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Point";
    String Conventions "COARDS, CF-1.0, Unidata Dataset Discovery v1.0";
    Float64 Easternmost_Easting -117.2767;
    Float64 geospatial_lat_max 48.4525;
    Float64 geospatial_lat_min 32.5708;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -117.2767;
    Float64 geospatial_lon_min -125.8555;
    String geospatial_lon_units "degrees_east";
    String history 
"2009-02-17 http://nwioos.coas.oregonstate.edu:8080/dods/drds/Groundfish%
20Survey%202003-2006
2009-02-17 http://coastwatch.pfeg.noaa.gov/tabledap/nwioosGroundfish.das";
    String infoUrl 
"http://nwioos.coas.oregonstate.edu:8080/dods/drds/Groundfish%20Survey%202003-
2005.info";
    String institution "NOAA NWFSC";
    String license 
"The data may be used and redistributed for free but is not intended 
for legal use, since it may contain inaccuracies. Neither the data 
Contributor, ERD, NOAA, nor the United States Government, nor any 
of their employees or contractors, makes any warranty, express or 
implied, including warranties of merchantability and fitness for a 
particular purpose, or assumes any legal liability for the accuracy, 
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 48.4525;
    String sourceUrl 
"http://nwioos.coas.oregonstate.edu:8080/dods/drds/Groundfish%20Survey%202003-
2006";
    Float64 Southernmost_Northing 32.5708;
    String standard_name_vocabulary "CF-1.0";
    String summary 
"The data available for downloading is summarized data from the 2003-2005 
U.S. West Coast Bottom Trawl Survey (WCGTS) of Groundfish Resources off 
Washington, Oregon and California.
 
SUMMARY

The Northwest Fisheries Science Center's Fishery Resource Analysis and 
Monitoring Division (FRAM) completed the sixth in an annual series of 
groundfish bottom trawl surveys in 2003. The survey was conducted June 
24 to October 23, 2003 and targeted the commercial groundfish resources 
inhabiting depths of 55 to 1,280 meters [m], (30 - 700 fathoms [fm]) 
from the area off Cape Flattery, Washington (latitude [lat.] 48°10'N) 
to the U.S.-Mexican border (lat. 32°30'N) using chartered West Coast 
commercial trawlers. These ongoing series of annual surveys, conducted 
by FRAM since 1998, are designed to monitor long-term trends in 
distribution and abundance of west coast groundfish, especially those 
species of management concern. The 2003 survey represents the first 
year in which the depth range was expanded to include both the 
continental shelf (55 - 183 m) and continental slope (183 - 1,280 m) 
area and the first year in which a stratified-random sampling design 
was adopted.

In 2003, 620 primary sampling sites, and associated secondary sites, 
were selected randomly prior to the start of the survey.  Trawling 
locations were allocated according to a stratified-random sampling 
design that divided the region into two geographic areas (north and 
south of Pt. Conception, CA and three depth zones (strata). The 
objective was to provide a representative sample of the various 
groundfish species and relative numbers in each stratum. By selecting 
random stations within certain depth zones, towable ground has an 
equal probability of being sampled during the survey. Thus, the 
method produces unbiased estimates of the relative stock size.  In
2003, a total of 574 successful tows were completed out of 643 
attempts. Simrad ITI net mensuration data, as well as global 
positioning system (GPS) navigation data and bottom contact sensor 
data, used to document performance (e.g. bottom tending), were 
obtained for most tows.  

An Aberdeen-style net with a small mesh (2\" stretched measure or less) 
liner in the codend (to retain smaller specimens) was used to sample 
fish biomass.  Target duration of each tow was 15 minutes. Tow 
duration was the time between touchdown and lift-off of the trawl net 
from the seafloor based on readings from bottom contact sensors.

Catches were sorted to species, aggregate or other appropriate 
taxonomic level and then weighed using an electronic, 
motion-compensated scale.  A total of 517 species or families (fish 
and invertebrates) were identified within the survey area. Although 
biological sampling effort continues to include Dover sole 
(Microstomus pacificus), shortspine thornyhead (Sebastolobus 
alascanus), longspine thornyhead (Sebastolobus altivelis), and 
sablefish (Anoplopoma fimbria), focus has increasingly shifted to 
encompass all groundfish species of management concern. Up to 100 
length measurements, sex determinations, and individual weights 
and up to 25 age structures were collected per haul for these species.  
 
SURVEY METHODS
Survey Period and Sampling Area

The 2003 WCGTS was conducted in two completed cycles of operations, 
or passes, between June 24 and October 23, 2003 from the areas off 
Cape Flattery, Washington (lat. 48°10'N), to the U.S. - Mexican 
border (lat. 32°30'N).  Four West Coast bottom trawlers were 
chartered through the standard competitive bid process. The Fishing 
Vessel (FV) Ms. Julie and the FV Captain Jack were used during the 
first survey period, from June 24 to August 13, 2003, and two 
additional vessels, the FV Excalibur and the FV Blue Horizon, were 
used during the second survey period, from August 31 to October 23, 
2003.  All vessels started their operations off Cape Flattery, and 
then progressed south along the coast, finishing the completed cycle 
south of San Diego, CA[w1]. 

 
Vessels and Sampling Gear

The four chartered fishing vessels ranged in size from 65 to 92 feet 
(19.8 to 28.0 meters) and in power from 450 to 775 horsepower. Each 
vessel was rigged as a stern trawler; with a rear gantry housing one 
or two net reels to set and retrieve trawl gear. Vessels were 
outfitted with split trawl winches and equipped with modern 
electronics including global positioning systems (GPS), multiple 
depth sounders, radars, and other navigational aids. Prior to the 
start of the survey, the NWFSC provided each vessel with two 5/8\" 
steel core trawl cables, each 2,288 m (1,250 fm) in length. Cables 
were measured side-by-side and marked at 25 fm increments while being 
spooled onto the vessel's winches.  The markings provided real-time 
verification of the release of equal warp length from both winches 
while setting a tow. 

All vessels were provided with two standard Aberdeen-style nets built 
and rigged to operate within strict specifications in compliance with 
protocols established for bottom trawl surveys (Stauffer 2004). The 
Aberdeen trawl is routinely used by fishers throughout the survey 
region and was chosen after substantial analysis of trawl performance 
over various towing situations. The Aberdeen trawl demonstrated 
relatively stable performance over the range of conditions expected 
during the survey (West et al. 1998).   Each net was outfitted with 
a small-mesh liner (1 ½\" stretched measure, #24 twisted polypropylene) 
in the codend to retain smaller fish.  Various aspects of the 
mechanical performance of the nets (e.g., spread between net wings, 
vertical distance from the center of the headrope to the bottom, 
distance from the headrope to the footrope, and clearance between the 
footrope and bottom) were recorded using acoustic and bottom contact 
instruments hung from the net during each deployment. Additional 
information was recorded on operational conditions such as: depth, 
amount of towing cable deployed, towing speed, tow duration, and 
weather conditions.  
 
Trawl Station Allocation

From 1998 through 2002 selection of sample sites for the WCGTS was 
based on a fixed transect design.  Following an evaluation of the 
transect-based survey design by assessment and survey scientists, a 
stratified-random sampling design was adopted in 2003.  The survey 
area was partitioned into ~12,000 adjacent cells of equal area (1.5 nm 
long. by 2.0 nm lat., Albers Equal Area projection) with each vessel 
assigned a primary subset of 155 [w2]randomly selected cell sites. 
In 2003, sampling density was assigned to areas defined by 
International Pacific Fishery Council

Management Areas and specified depth categories.  In 2003, sampling 
locations were allocated by assigning 16 - 25 % of the effort within 
each INPFC area. This allocation scheme was adopted to maintain a 
level of sampling effort in the slope area (184 - 1,280 m) comparable 
to prior years and to account for bathymeyric disparity between the 
areas. The survey area was further stratified into three depth zones 
(55 - 183 m, 184 - 549 m and 550 - 1,280 m). Emphasis was placed on 
continuing a level of effort in the 184 - 549 m and 550 - 1,280 m 
depth strata similar to past surveys while maintaining a minimum of 30 
tows per strata. The total number of sites targeted for the survey 
year was apportioned across geographic area and depth categories, 
based on the above scheme, and then primary stations were drawn from 
the survey cell pool, by strata, using a pseudo random number 
generator. Each cell was sequentially assigned to an individual vessel.  
The process was repeated to identify two alternate sampling sites per 
location; additional constraints were imposed to ensure alternate sites 
were neither so close to an untrawlable primary site that they exhibit 
the same untrawlable features, nor were at an impractical transit 
distance.  

In 2003, 620 primary sites were selected with each vessel assigned 155 
tows (one tow per cell).  A total of 574 successful tows were completed 
out of 643 attempts[w3].
 
Trawling Protocol

Standard trawl operations were followed to minimize differences in 
sampling (fishing) efficiency across the range of conditions 
encountered during the survey and over time (Stauffer, 2004).  By 
established conventions, trawling operations were limited to the 
daylight period, i.e., initial tow each day began (net on seafloor)
following official sunrise, and the last tow of the day ended (net 
off seafloor) before official sunset.  Once a vessel was in the 
pre-selected sampling area (1.5 by 2.0 nm cell), the captain was 
instructed to observe the following search rules to identify a 
specific tow site: 1) search within the specified depth range; 2) 
remain fully within the specified area; and 3) complete the search 
for trawlable ground within 1 hour.  If no trawlable site was found 
within the 1-hour limit, the cell was noted in the log as untrawlable 
and the vessel proceeded to the secondary cell. If the secondary cell 
also proved untrawable, the tertiary cell was attempted next. If a tow 
was attempted but judged unsatisfactory, or if the tow was aborted, a 
reasonable attempt was made to redo the tow within the primary site 
before proceeding to alternate sites.

All fishing operations, including vessel operations and gear 
performance were monitored using a suite of trawl instrumentation 
systems.  The NMFS-supplied differential global positioning system 
(GPS) navigation unit (Northstar 500 [Footnote1] or the vessel's speed 
indicators were used to monitor towing speed for each survey haul 
(target 2.2 knots over ground). All hauls were additionally monitored 
using the Simrad Integrated Trawl Instrumentation (ITI [Footnote 2]) 
system.  Four sensors from the ITI trawl system were attached to the 
net prior to setting the gear.  Two instruments were mounted on the 
center of the net headrope: the trawleye provided information on the 
vertical opening of the trawl, distance to the seafloor, and footrope 
clearance above the bottom, and the temperature-depth sensor recorded 
ambient temperature and the depth of the trawl headrope.  Paired wing 
units (communication sensor and remote sensor) were attached on the 
port and starboard wings of the net to measure wing spread.  Extreme 
or prolonged periods of abnormal wing spread were indicative of net 
performance problems. Wing spread provided an indicator of the net's 
contact with the bottom and whether adequate scope (amount of wire 
deployed) was utilized.  With too little scope the gear tends bottom 
poorly, while too much scope may impact the proper spread of the 
doors. The captain, relying on past experience and judgment, determined 
the initial scope at the start of each tow. Guidelines for initial 
scope, tailored to local conditions and vessels, were provided for 
use at the discretion of the captain. Since the ITI trawl instruments 
displayed gear performance in real time adjustments to the scope were
made if necessary. Scope was adjusted by deploying additional wire until 
the gear made stable, consistent bottom contact according to the ITI 
display. The Simrad ITI also provided geo-referenced trawl positions 
relative to ship position, supplying a means to track the trawl 
location along the seafoor throughout each tow.

A pair of bottom contact sensors (BCSs) and a secondary 
temperature/depth recorder (Seabird SBE39 [Footnote 3]) were also 
deployed on every haul. The BCSs were attached four feet from the 
center-point of the footrope, on either side of the net.  The BCSs 
recorded the angle of incline of the net, indicating when the net 
landed on and lifted off bottom and provided redundancy in the event 
that the ITI failed to perform adequately. The Seabird 
temperature/depth recorder was attached to the head rope in an ABS 
plastic sleeve. The BCS and Seabird temperature/depth data were 
reviewed following every haul to provide additional information on 
bottom contact and trawl performance. In addition to monitoring trawl 
performance, the data from the sensor systems (Simrad ITI, BCS and 
Seabird) were used to calculate net dimensions (net height and net 
width), duration of the tow, and distance fished. 

While gear was being set, vessel speeds varied from 2.2 to 5 kn. 
After the net made contact with the bottom, vessel speed was targeted 
at 2.2±0.5 kn.  The haul officially began when the net was in proper 
fishing configuration and maintained steady contact with the bottom.  
The haul ended when the net lifted off the bottom after the start of 
haulback.  Tow duration was targeted at 15 minutes. The Simrad ITI 
trawl eye was used to monitor ground-gear contact during a haul, but 
the actual bottom time was determined using data from the BCS. 
Position data, collected at 2-second intervals for each haul using a 
GPS, were used to monitor ground speed, track the vessel path, and 
estimate distance fished. Average vessel speed over ground and distance 
fished were calculated from the position data and the trawl's actual 
bottom time. All features of the \"trawl event\" (i.e. from commencement 
of the deployment of the net to the completion of retrieval of the net) 
including net mensuration information, GPS data, trawl location, scope, 
vessel depth, trawl gear depth, and sea state conditions, were logged 
using a customized software program called 'Towlogger'.  

Following every haul, data were reviewed to determine a performance 
rating for each tow. A tow was classified as unsatisfactory if gear was 
severely damaged during a haul since damage to the gear might affect 
catch composition. Moreover, if gear performance was otherwise deemed 
unacceptable (e.g. large quantities of mud or jellyfish, lost or 
abandoned fishing gear ensnared in the net, net off bottom for an 
extended period during the tow etc.), the tow was also rated as 
unsatisfactory.  Unsatisfactory hauls were not included in this data 
set.

 
Sampling Procedures and Biological Data Collection

Catches were sorted to species or other appropriate taxonomic levels 
and then weighed in aggregate using an electronic, motion-compensated 
scale (Marel, hf. [Footnote 4]). Subsamples of important management 
species were randomly selected for individual measurements (length and 
weights) and biological sampling (age structures and sex 
determinations). Up to 100 sex determinations and length measurements 
(to the nearest cm) were collected per haul from each of these species. 
Although fork length (or total length) was generally measured for most 
species, anal length was recorded for Pacific grenadier (Coryphaenoides 
acrolepis) and spotted ratfish (Hydrolagus colliei). 

Otoliths were most commonly removed to determine age; however, 
exceptions to the use of otoliths included collection of: fin rays 
from lingcod (Ophiodon elongates) and second dorsal spines from spiny 
dogfish (Squalus acanthias). Fish were randomly selected for aging 
from the subset of fish chosen for length determination. Up to 25 
individuals per species were targeted for otolith (or other age 
structure) removal per haul. Individual lengths and weights were 
collected from all fish selected for age structure removal.  For other 
species, only total counts and aggregate weights were recorded, except 
when additional information was collected for special projects 
(including stomach contents, tissue samples, fecundity, and toxicology). 
Data were logged wirelessly into a ruggedized Itronix3 notebook computer 
(Itronix Corp. [Footnote 5]) using the Fisheries Scientific Computing 
System (FSCS) version 1.6. 

Any unidentified species were labeled, frozen or preserved in formalin 
and retained for later identification.  After all biological data were 
collected; marketable fish were placed in the hold of the vessel, iced 
and then delivered to a shoreside processing facility within 5 days.  
Species with no commercial value or those with catch prohibitions were 
returned to the sea as soon as possible.

[Footnote 1] Northstar Technologies, 30 Sudbury Rd., Acton, MA 01720.
[Footnote 2] Kongsberg Simrad Mesotech Ltd., 1598 Kebet Way, Port 
Coquitlam, BC V3C 5M5, Canada.
[Footnote 3] Sea-Bird Electronics, Inc., 1808 136th Place NE, Bellevue, 
WA 98005 USA 
[Footnote 4] Marel, hf., Hofdabakki 9, 110 Reykjavik, Iceland. 
+354 563 8000.
[Footnote 5] Itronix Corp.12825 E. Mirabeau Parkway, Spokane Valley, 
WA 99216-1464
 
CONTACT
Beth Horness
Northwest Fisheries Science Center
Fisheries Resource Analysis and Monitoring Division
2725 Montlake Blvd. E
Seattle WA 98112";
    String time_coverage_end "2005-01-01T00:00:00Z";
    String time_coverage_start "2003-01-01T00:00:00Z";
    String title "Groundfish Data for U.S. West Coast (2003-2005)";
    Float64 Westernmost_Easting -125.8555;
  }
}

 

Using tabledap to Request Data And Graphs from Tabular Datasets

tabledap lets you request tabular data (for example, buoy data) and graphs of tabular data, via specially formed URLs.
The URLs specify everything: the dataset, the desired file type for the response, and the subset of data that you want to receive.
You can form these URLs by hand or with a computer program,
or (much easier) you can use the dataset's "Data Access Form" (oriented to requests for data)
or the dataset's "Make A Graph" form (oriented to requests for graphs and maps),
both of which generate the URL when the form is submitted.
tabledap is a superset of the OPeNDAP DAP constraint protocol.

tabledap request URLs must be in the form
   http://coastwatch.pfeg.noaa.gov/erddap/tabledap/ datasetID fileType {?query}
For example,
   http://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTao.htmlTable?longitude,latitude,time,sea_surface_temperature&longitude>180&longitude<180.2&latitude>0&latitude<0.2&time>2007-06-01T00:00:00Z

For details, see the tabledap Documentation.
 
ERDDAP Version 1.12


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