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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7406337          
refSNP ID: rs7406337
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_198834.1:c.339-12604G>A
NM_198836.1:c.228-12604G>A
NM_198837.1:c.53+1730G>A
NM_198838.1:c.-119+1730G>A
NM_198839.1:c.228-12604G>A
NT_078100.1:g.928627C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss11189872 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7406337 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss11189872WI_SSAHASNP|chr17.NT_078100.1_928627fwd/BC/Ttatgtgtgtgtatatatatatatatacacatttttttttgagatggagtttcgctcttgt07/03/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7406337|allelePos=4988|totalLen=5686|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=116
 TTaagaaagg ccaggtgcgg tggctcacat ctgtaatccc agcacttcgg gaggccaagg
 tgagaggatg gcttgaggcc aggaattcaa ggccagcctt gccaacatgg caaaaccaca
 tctctactta aaaaaaacaa aaacaaaaat tagctgggcg tggtggtgtg tgcctgtagt
 cccagctacc tgggaagctg agacaggaga atcgcttgaa tctgggaggc agaggttgca
 gtgagctgag agcgcaccac tgcactccag cctaggcaac agagcaagac ttagtctcaa
 aaaaaaagaa attgactcta ggcaaatgac caataagtac ttcagtgccg gcactacccg
 tgcaaaacag gaaacaaagt gtgaagcaat gcaagcacat atgtgaaatt tggctccaca
 ctaaatccgg cttcatgctt aactatatat taaaaaaact ggcaaactgc cgacacattt
 ttttttacaa tacttatttt tactttaatc aagactaaga actttaacta tgaaaatgtt
 aattagccaa atttctccag ttctctatca ggttttaagc aatattttat tatctaaact
 tttccacgtc tttctcccct ccttaccggt tccttactac attgtttcat aaataacctt
 ttcaaatctg taatttgaac taacttttag aaaacttccg aattagacaa aattattatt
 ttttctcact aatcacacaa cactttctgg cacattttgt atatagaatt atgtgttaac
 tagaattctt atccttagta acctaaaact tcaatgaaac ccgaaaaagc aagaaatcct
 gaaccatcag agataaaagc attatagata agaacaattc cacaatttgt agaaacatat
 ttccccatgt cacaaccttt tcttaattgg aactgaccca gatattcaat gagcatcaaa
 aataatttta ggactttttt tttttttttt ttttttgtga cagagtcttg ctctgtcccc
 caggctggag tgtagtggtg taatctcaac tcactgtaac ctcctcttcc caggttcaag
 caattctcca gcctcagccc cccagtagct gggattacag gcacacacca ccatgcccag
 ctagttttta tattttcagt agagatgggg tttcgccact ggccaggctg gtctcgaact
 cctgacctcg ggtgatccac cctccttggc cttccaaagt gctgggatta taggcatgag
 ccaccacgcc tggccaagat tttaatttac acaaaaagat tacctaaaac atttatccca
 ttcactgtac tcaattcttt catgtttaac ggtttattta gataacttct ataaacagag
 atatcagaca ctatcattta aagttagtta tttccttgct aaccatgttt ttaatagcca
 gcgaacataa ggtgctcacc taaacctaag taacagcctt aaaggtaaat acactggtat
 ttttttttgc caataactca gaagacttag ttaacaacat taagttactc tcattcgttg
 aaaaaaaaaa gggcacacaa accaagatca ttttgtatgg gctaagttag tagttttata
 accttctatg ccaaacattg acatctcaaa atatttagca gagacaaata taaaatccag
 acaaagaatg tattctgaca attctgaagg catttctagt tttattttac taataatttt
 aaagccagct tgtttagtaa agttatactt aagtcacgtg aacttgaaaa ttgcttagac
 ttatttactt aatttttaag tgctctttta tttataagcc aatttggtag acacaacatg
 taacaataag tgtgcataca aataaacaca tctagacatg tatagacgca cacaaacgaa
 gattcaatcg cttttaactg ggaatcttaa ggcatgagat agcaatacaa gcttgggggg
 ttttcctttg tttgccccaa cagataatcc aatgaaggct gtgaaccaaa atttcagata
 tagcagtttc cacagcagtt tgacacatgc aactccatcc cactttccca ttcaacagca
 agctccagat tccaaacaat attgggccaa acagtattgc aactgcgaga gaaaattcta
 aggagggctt aatactagac ctcagaactc tgcctagggt gtcccctttg gagaagttga
 ggtctggagg atccctgggc cgtccccctt tggggtccag tctcagagtg tcagacgtct
 ctgaccttag gtgggcactg gtgctgctta gcatgttttc ccttcagagg caatggccta
 ctatgaggtt tccttttgtc cctggatgaa ggcctggact tctggcatcc ttataatttg
 ataaggccac actttcccat gcttcctgtt ccactagagt gatagccatg aactgtaatg
 ataggaactg gaggctgggt gggtttcttt tgtccttagc cagtagagta ggggaaggga
 agaatttagc atgagaaaac aaggtttaag tcactgaaac aaatgccagc tcgccccaag
 ctgtgccaca cgtagggatc agggaccaca actggaaaag atagaaaGGA GTCCTTCAGA
 Gtggccccgg ccagaaacct gcagttgcct ctgtgtttag gtgctgccca ccaaccgtcc
 caagttggaa aggaaaagag agagagagac tgagattccc ctgtatggag caggaaaaac
 aaacaagaaa aataaacccc aaactttggg attacctcct ggctggcttg ccaaaatatg
 ttaccagtgg aggctgtaca agttcttggt gttttgaaca aagaattgaa caaaacacac
 aaacaaagca gggaaagaat aaagcaacaa aagcagagac ttaactgaaa atgaaagcac
 acggccaggc acagtggctc atgtctgtaa ttccagcact ttgggaggta aatgtggggg
 gataacatga ggtcaggagt tcgagaccag cctagccaac atgttgaaac gttgtctcta
 ctaaaaatac aaaaattagg ccaggcacgg tggctcacac ctgtaatccc aacacattgg
 gaggctgagg cgggtggatc acgaggtcag gagatcaaga ccatcctggc taacacagtg
 aaaccccatc tctactaaaa aatacaaaaa attagctggg cgtggtggtg ggcacctata
 gtcccagcta ctcgggaggc tgaggcatga gaattgcttg aacccgggag gcaaaggttt
 caatgagcca agatcgcacc actgcactcc agcctgggct aaagggcgag actccatttc
 aaaaaatcaa aaaattaaaa taaaaaataa aaaaAAgaaa atgaaagcac actctacagg
 ttgggagctg gcccaagcaa gccagccact caagggtctg gttacagaat tttctggggt
 ttaaataccc tctagagatt tccattgtta cttggtatac accctgtgta aataaagatg
 atgaagttac aaagtcattt attcagtgta tatcctatgt aaaggaagag gatgcttcct
 gtcataactg aagtgcttgt ttccatttga tttagttcta gaaagttctt gggttccctg
 cctccaggtc ctactcgctt gcATGAttct cattgtgtcc tcacagagtg gaaggggaaa
 ggcagatctt tggagccttt tttttttttt ttttttttga gacagagtct cgctctctct
 cccagtctgg agtgcagtgg tgagatctcg gctcactgca agctctgcct cctgggttca
 caccattctc ctccctcagc ctccagagta gctgggacta gaggcgcccg ccaccacgcc
 cggctaattt tttgtatttt tagtagagat ggggtttcac catgttagcc aggatggtct
 cgatctcctg acctcatgat ccgcctgcct cggcctccca aagtgctggg attacaggca
 tgagccacca tgcctcgcct ggagcctatt ttataagggc actaatccca ttcatgaggg
 ctctgcccca tgatctactc aactcccaaa ggccccactt cttgacatag tggtaattag
 atttcaacat atacattttg TGTGTGTGtg aggcagagtc tcgctctgta gcccaggctg
 gagtacagta gcacaatgtc aggtcactgc aacctccatc tcccaggttc aagcaattct
 cgtgcctcaa ccacctgagt agctgggatt acaggatcct accaccacac ccggctaatt
 tttgtatttt tagtagagat ggagtttcgc catgttgccc aggctggtct cgaactcctg
 gcctcaggtg atctgcccgc ctcggcctcc caaagtgctg aggttacaga catgagccac
 cgtgcccagc cTCAACATAT AAATTTTGGC AAAGACACAT TCAGACACTA TATATCAATA
 TATACTTATA GAGATATATA TGCACGTTTT ATTTCTATAT GTATAGCCAT GAGGTTTTTA
 TATAAAAACT ATGTTATATA TAAAACACAT TTAAggccgg gcgcggtggc tcacgcctgt
 aatcccagca ctttgagagg ccaaggcggg catatcacct gaggtcgaga gttcgagacc
 agtctgacca acatggagaa accccatctc tactaaaaaa acaaaattag cggggcatag
 tggtgcatgc ctgtaatccc agctactcgg gaggctgagg caggggaatc gcttgaaccc
 gggaggcaga ggttgtggtg agccaagatc gcgccatcac actctagcat gggcgacaaa
 agtgaaactc tgtctcgaaa gaaaaaaaaa aaaaaaCCAC ACACACATGC GTGTGTGtac
 atatatatgt atatatgtgc gtgtgtttgt gtatgtatat gtgtgtgtat atatatatat
 atacaca
 Y
 tttttttttg agatggagtt tcgctcttgt cacccagact ggagtgtgat ggcgtgatct
 ctgctcactg caaattctgc ctcctgggtt tgctcgatca agcaattctc ctgccttggc
 ctcccaagta gatgagacta caggtgcctg ccaccacgcc cagctaattt ttgtattttt
 agtagagacg gggtttcacc atgttggcca ggctggtctc gtactcgtga cctcaggtga
 tccacccgcc ttggcctcgc aaagtactgg gattacaggc ataagccacc accgtgccca
 gcctatatat acatttttga aatatatatt tatacatgta tatacataAA AAATTTTGAT
 ACTATATTAT ATATATACAC AAACATAGAT TATATATATC TCAGTTACTT TGGAAAAAAA
 Atttttagag atgggttctc actgttgacc aggctgcagt gcagtggcag gaatatatct
 ccctgcaacc tcaaactgct gggctcaagc aatcctctgg cctcagccta cagagtagct
 ggtactacag gctcatgcca ctgcactcag cTATATTGTA GTTACTTTTA TACCTCTTTG
 CCTCTCAGTG GAAGTTTTGC TTGGTTATCC CCTCAAAGGG TGGAAGAAGT GGTAAAAAAG
 AAAAAGGGGC AATTACAGAG GCAGTTGGGG GAAAAAAA

  GeneView back to top
GeneView via analysis of contig annotation: ACACA acetyl-Coenzyme A carboxylase alpha
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_078100->NM_198834
function
referenceNT_078100->NM_198836
function
referenceNT_078100->NM_198837
function
referenceNT_078100->NM_198838
function
referenceNT_078100->NM_198839
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_078100->NM_198834->NP_942131928627reverseintron
referenceNT_078100->NM_198836->NP_942133928627reverseintron
referenceNT_078100->NM_198837->NP_942134928627reverseintron
referenceNT_078100->NM_198838->NP_942135928627reverseintron
referenceNT_078100->NM_198839->NP_942136928627reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7406337 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
17NW_926817.1844995^84499632477026^32477027plus-alt_assembly_1CeleraCeleraview4986..4987
17NT_078100.192862732728588plusCref_assemblyreferencereferenceview4987

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_078100
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .