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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9607466          
refSNP ID: rs9607466
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:G/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NM_003935.3:c.-98-1539A>C
NT_011520.11:g.1722287T>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13350298 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9607466 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13350298SC_SNP|NT_011520.9_1722287fwd/BG/Tgtcaggagttcaagaccagcctggccaacaggcaaaaccccatctctaataaaaatacaa10/22/0310/31/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9607466|allelePos=372|totalLen=680|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=119
 CAATGAAACC AGAAAATATT AGGAAAAACA TGTGCTTTTA AAATAAATCT CACAAgccag
 gtgtggtagc acatgcctat agtgtcagcc actcaggagg ctgaggcaag aggatcgctt
 gcttgaggcc aggaattcaa ggctgttgtg tgccatgact gcacctgtgg atagaacagc
 cacttcactc cagcctaggt gacagcaaga ccctgtctca aaaaaagtaa aaGCAAAATA
 AAATAATCTC AGCATAAAGA AAAACTACCA CCTAGATggg cacagtggct cacgcctgta
 tcccagcact ttgggaggct gaggtgggtg gaccacttga ggtcaggagt tcaagaccag
 cctggccaac a
 K
 ggcaaaaccc catctctaat aaaaatacaa aaattagctg ggtgtggtgg tgggtgccta
 taatcccagc tgcttgggag gctgaggcat gagaatcgct cgaactcagg aagtggaggt
 tgcagtgagc cgagatcatg ctattgcact ccagcttgta caacagagcg agactccatc
 tcaaacaaaa aaaaaaaaaa aaaaaaaaGG GAAAACCACC ACGTAAGTAC CTTTGTGGTA
 TCACATCATG TCCAACAACA CTCGCAGAAG AAACTCAGAA CTACAATGAG CTTGTGCTTA
 TCACATAG

  GeneView back to top
GeneView via analysis of contig annotation: TOP3B topoisomerase (DNA) III beta
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_011520->NM_003935
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_011520->NM_003935->NP_0039261722287reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9607466 maps exactly once on NCBI human chromosome 22
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
22NW_001838745.14159255288792plusTalt_assembly_8HuRefHuRefview371
22NW_927628.14154536149259plusTalt_assembly_1CeleraCeleraview371
22NT_011520.11172228720661718plusTref_assemblyreferencereferenceview371

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011520
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .