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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs1915964          
refSNP ID: rs1915964
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:92/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_001030019.1:c.185-3911G>A
NM_152782.3:c.185-3911G>A
NT_007819.16:g.47549831C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss11857614 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1915964 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss2801298TSC-CSHL|TSC0967917fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa01/02/0110/10/0392Genomicunknown
ss6191719SC_JCM|NT_007819.10_47358566fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa01/10/0310/10/03120Genomicunknown
ss11857614WI_SSAHASNP|chr7.NT_007819.13_47352989fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa07/04/0310/10/03116Genomicunknown
ss14320530WI_SSAHASNP|chr7.NT_007819.14_47352989fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa11/05/0311/22/03126Genomicunknown
ss17188911CSHL-HAPMAP|CSHL-HuAA-200402.chr7.NT_007819.14_47352989fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa02/17/0403/04/04120Genomicunknown
ss22604419SSAHASNP|WGSA-200403-chr7.chr7.NT_007819.14_47352989fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa03/21/0403/21/04121Genomicunknown
ss22911451SSAHASNP|AACC-200403.chr7.NT_007819.14_47352989fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa03/22/0403/22/04121Genomicunknown
ss42899125ABI|hCV26636149fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa07/18/0507/18/05126Genomicunknown
ss93673677BCMHGSC_JDW|JWB-2306112fwd/BC/Ttacaaaaatcaaatcaaaatggattaaaggttaaatctaagactttagactatgaaacaa02/26/0803/04/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1915964|allelePos=3462|totalLen=7606|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=129
 GGGCTGGCAC AGAAGCTGAC CTGTGTTTAT TCCACGCCTA TAGCTTTCTA GGAAGTGGCA
 ATATCTATTG AAAGACTTCA AAGACATACT GCCGAAGCCC AACTGGGACA AAGGACAGTA
 GATGATGGAA GTGGCAGACA GACCCAACAG CCCATGAATA AAGAGGCAGT CTCTTTCTGG
 AAAAAGGGCT CAGAAGGACT gctgcatcat atactaggaa gcagagaacg taatgtgcat
 ttctaggact ggacgcatgt tcataaatga ccccaagaag atactgggtt gcacctctgg
 tggatctgta gattgtgtat aagcaggaga tgaagactaa ggcagagttt taggtggcct
 ggcttagtct tgaaggagtg tcccagctta gagccaagct gcaaagactg agagagtaat
 ctctgtctct gtctctgttt ctgtctctct ctcactctct ctctggatcc aggaattcaa
 ggaaatatgt gagaaatcag tggctaacca ctgagatagt ggaatagcaa acatatacga
 caagaaatac agtcttccaa aatagttttg ggaggccgag gtgggtggat cacaaggtca
 agagatcgag accattctgg ccaacatggt gaaaccccgt ctctactaaa agtacaaaaa
 ttagctgggc gtggtggtgc tcacctgtgg tcccagctac tcgggaggct gaggcaggag
 aaatgcttga acccaggagg tggaggttgc agtgagccaa gatcgcacca ctgcactcca
 gcctggcgac agagtgagat tccatcccaa aaaaaaaaaa aaagtttgaa aatgttacta
 aacaaacaag tgattgcagc cctcaacatg caacagcagg caaaccctgg ggaagaggga
 aatctgaatt ctagagttat tacattataa tattaaaatg ctcaatttgc aaaatcacat
 ggcatacgat gaaacaggaa agtatggcac attcaaaaag agaaaatggc agaaaccatc
 cctgaggaat ctgacattgg aattacgaga caaaaacttt atatcagctg ttctacatat
 gttcaaaaac taaaggaaac catggacaaa gaactacagg aaaccaggaa gattatgtat
 ggataaaatg agaatattga ttaaaataaa ttatgaaaga aaccaaatat aaactctgaa
 gctgaaagag gaataactaa aatgaagaac ttactagaag ggctcaacag ttgatttaag
 caggcagatg aaagaatcag ttaacttaaa gatagagcta tgaaattatt gagtctgtga
 acagaaagag aaaagtgaaa aagtgaacag agcccaagac acccatcaga caccatgaag
 tggatcaaca tatgcattgt ggcagtctca gaaagaggag agagagagaa aggggcagaa
 agaaatgaag aaataaataa aacctatggg atacagcaaa agcagtacta agagggaaga
 ttatagttgt aagtgcctat attgaaaaag aggaaaaaca tcctataaat gatgtaatga
 tgtaccttaa agaaatagaa aagcaagagc aaaccaaccc caaaatgagt agaagaaaag
 aaataataaa gatcagagaa gaaataaata aaatggaaat gaagtaaaca atacaaaaga
 tcaatggaac aaaggttttt agaaaaatta aatgaaactg acaaaccttt agccagatta
 acaaaaaaga gaagatacaa atgaaattag aaataataaa gaagacatca aaactggtac
 tgcacaaatt taaaggatca ttactagcta ctatgaacaa ctgtatgcca ataaattgga
 aaatctagaa gaaatggaca aattactaga cacatacaac ctaccaagac tgaaccagaa
 agaaattcaa aacctgaaca gaccaataaa aagtaatgag atcgaagcca taataaaaaa
 tctcccagta aagaacagcc cgggacccca tggcttcact gctgaattct atcacacatt
 taaagaagag ctaataccaa ccttatgcaa actattctga aaaagagagg aggagggaat
 acttctaaac tcattctaca aggccagtat taccttgata tgaaaaccag acaaagacac
 atcaaaaaaa aaaaaaaaaa aaaaaaagaa agaaagaaaa ctacaggcca atatctctaa
 tgaatattga tgcaaaagcc cttaacaaaa taccagcaaa ctgaattcca tgatacatta
 gaaagatcat tcatcatgac tgagtgggat ttatccctgg gatgcaagga tggttcaaca
 tatgcaaatc aatcaatgtg atacaccata tcaatagaat gaaagataaa aaccatgtaa
 tggttttcaa ctgatgctga aaaggcattt ggataaaatt caacatctct ccatgataaa
 aaccctaaaa aaaactgggt atagaaggaa catacctcaa cgtaataaaa gccatgaatg
 acagacagat ccacagctgg tatcacactg aatgggaaca aactgaaagc ctttcctcaa
 agacctggaa cacgacaagg ttgctcactt tcaccactgc tattcaacat agtactggaa
 gtcctagcta gagcaaccag acaagagaaa gaaataaaag gcatccaaac tgcaatgaaa
 gaagttaaat tatccttgct tgctgataat atgattttat attaggaaaa aaactattag
 aactgataaa ttcagcagtg ttgcaggata caaagtcaat gtacaaaaat cagtagcatt
 tctatataca aacagtgaac aatctgaaaa attaataaag taatctcatt tacaatagcc
 acaaacaaaa tcaaatacct aggaattaac caaagaagtg aaagatctct acaacgaaaa
 ctataaaaca ttgatgaaag aaattgaagg agaaacaaaa agtagatagc tcatgttcat
 gaattagaag atcaatattg ctaaatgtcc atactaccca aagcaatcta catattcaat
 gcaatcccta tcaaaatacc aatgacattc ttcacagaaa tagaaaaaaa caaccctaaa
 atttatatgg aaccacaaaa gaccccaaat agtcaaagct attctaagca aaaagaagaa
 aattggagga atcacattac ctgacttcaa attatactac agagcttagt aaccaaaaca
 gcagggtact ggcataaaaa gtgagagata ggctgatgaa acagaataga gaacccctac
 agagaactca ttttcaacaa atgtgccaag aacatacgct ggggaaatca tagtctcttc
 aataaatggt gctgggaaaa ctagatattc atatgcagaa gaatgaaact agacccctat
 ctcctgccat atacaaaaat caaatcaaaa tggattaaag g
 Y
 ttaaatctaa gactttagac tatgaaacaa ctataagaaa acattggggg acaatctcca
 ggtcattggt ctgggcaaaa atttcttgag cagcacccca caagcacagg caacaaaagt
 aaaaatggac aaatgggatc acagctaaaa agcttctgac agcaaaggat acaatcaaca
 aagtgaagag acaacccaca gaatgggaga aaatatttac aaactaccca tctgacaagg
 gattaataag aagaatatat aaggagctca aacaactcta cagagaaaaa aaaaaaaaac
 aaacctaaat aatctgataa aaaaatgggc caaagattca aataaacatc tctcaaaaga
 agacacacaa atggcaaaca ggcatatgaa aaggtgccag tttcattgat tgtcagagaa
 atgaaaatca acactacaat gatatgttat ctcacctaag ttaaaatggc ttatacccaa
 aagataggca ataacaaatg ctggagagga tgtggagaga ggagaactct catacactgt
 tggtgggaat gtaaattagt acaaccactc tgcaggatag tttggagaat cttcaaaaaa
 tgataaacac agctgatata tgatccagca gtcctactgt tgggcatata cccaagataa
 aggacatcag tatatcaaag agatatctgc gctcccattt gttgcagcat tgttcacaat
 agctaagatt tggaagcaac ctaagtgtcc atcagcagat aaatggataa agaaaatgta
 catattcaca atggtgtact atgcggccat aaaaaagaat gagataatgt catttgcaac
 aacatggatg gaattggaga tcattatgtt cagtgaaata agccattcat agaaagacaa
 atatcacatg ttctcaatta tttgtgggag ctaaaaatta aaagaattaa actaatgaac
 atagagagta aaatgatgat taccagaagc aggtgagggt agtgtcgaag atggaggagg
 tgaggatggt taataggtac aaaaaataga aagaataaat aagacgtact atttgacaac
 acaatgggtg actacagtaa aaaattactt aattgtacat tttaaaataa ctaaaagatt
 gtatttggat tgtttgcaac acaaaggata aatgcttgag gggatggata ccccatcctt
 catgatatga ttatttcaca ttgcatgcct gtatcaaaac atctcaggta ccccataagt
 atatatacta tgtacccaca aaaaattaaa aAATTTTAAA TTTTAAATAA Gaaaaagaac
 atttgaagaa ataatggctg aaaaagttcc aaagttgata aaaagccatg aatctacaca
 tccaagaaac tcaacaaact tcaagtaaga caaacttaaa aagactcatg ctgaaaccta
 ttataatcaa actgttgaaa gacaaaaaca cagagataat cttgaaagca gaaagagagc
 aatgccttgt tatatagaag aaagtctttg ttggattatc acctgatttt tttcttcaga
 aactatagag gccagaagac agtgggatga catatttaaa gcgttgaaag aaaaaaaatt
 ctatatatga gaaaacgatt ctcccaactg cagaaaaaat taacatattc taagataaag
 aaaagctcat ggtgtctcta tgactagacc agcccttcag gaagtgctaa agggattcct
 tcaggctgca gtgaaaggac attagagagt aactcaatgc cgcatgaagc aatcaaaatc
 tccagtaaag gtaacagaga ggtaaatatg aaaccagtat tattgttttg ggtttgtaac
 tccttctttt atttctttca taatttaaaa gacaaattta taaagcataa ttataaatct
 atgtttatgg gtacccaatg tgtaaagatg taatttttga caacataaag aggagtaaat
 cccagtgaat acagatcata aggaggaaaa aaaagaggag cagagctgaa taggagcaga
 gtatttgcat tctattaaag ttaatttggt ataaatttaa actatattgt tataaatgta
 gggtctcagt tgaaatcccc atggtaacca ctaagaaaat atctaaaaaa cgtatacaaa
 atgaaacaga tcagaatcaa aagagtgcac tacaacaaag caattaaaca caaaagaagg
 cagtaaagaa ggaaatgaag aacaaaaaag gtataagata tagattttct aaaaaataga
 aaaatggcag aagtaagtca ttccttagta gtaattaatg taaatgaaaa tggattaaac
 tttccaatca aaaggcagag gctggcagaa tgaatttaaa aacatgattc aactatatgc
 tgcttacaag agatttactt tagaatcaaa Actgaaattt ataaaacatg gctgaaagaa
 attaaagaag acctaaataa atggaaggac aacttgtgtt catgaattgg aagatttact
 actgctaaga tggcaacact acctaaagct gtccacagat tcaaagtaat ctttatcaaa
 atccaaacag catgatactg gataatgata gacatataga ctaatgggct agaatatcca
 gaaataaacc cattcaacta tagccaattc agtttttgga acagaggaca agacattcaa
 agattcctat agggaaagag taatattttt agcaaatatt actttggctt tccacatgcc
 aaaaaatgaa gttggatccc ttgcatcata tacaaaaatg aactcaaaat gggtcaatta
 cctaaatatt ataagagcta aaaccagaaa actcttTTAA AAAGGTTTGG CAATGGATGC
 TTCAATATGA CACCCtcaaa attacaaacc ttcgtgtatc aaagaaagtg caaagacaac
 ctagaatgaa agacaaccta gaatgaaaga aatgttttca agtgatatat ctgagaagga
 tttggtatct agaatatatt aaaaaactct tccaactcaa caacaaaagg acaaacaacc
 taatcaaaaa tgagcaaaag actttaatgg acatgtctcc aaggaacaca tacaaacggt
 caataagcac ataaaaagat gcttgacatc attagtcatt agagaaatca aaccatgatg
 aaacatgact tttcatccat caggtggctg taatttaaaa aaaaaggaaa aaaatgatag
 tggaaatgta gagaaattgg acttcttgtt ttaatccatt tgtgttgctg taaaggaata
 tctgaggttg ggtaatttat aaagaaaaga ggtttatttg gctcacagtt ctataggctg
 tacaagaagc atggcaccag catctacaac tggtgagggt ctccagctgc ttccgctcat
 ggtggaaggc aaaggaggag ccagcatgtg cagagatcac atggtgagag agggagcaag
 agagagctgg gagaagtcag gttcttttta acaattagct cccacaggaa ctaatagagt
 gacaactcat tactgtaagg atggaaccaa gtgattcatg aggaatctgt cctcatgacc
 caaatgcctt ccattaggcc cccacctgca acactggggt tcaaatttca acatgaggtt
 tgggaggaca gatatccaaa ctatagcagt cctcctacac tgcttgtggg aatgtaaaat
 agtgcagcca ttgaggaaaa cagtctggtg gttcctcccc agaaatctca ttcctatgta
 tatacttgaa agaattgaga acaggtgttc aaataagcac acatacacac ttatgcacag
 catcactatt cacaatagcc taaagataaa agcactctaa atgtccatga atagataaat
 ggataaacaa aatgaggtat atacatacaa tgaaatatta tttagctaca aaaaggaatg
 aggaactgac acatgatagg atatggatga accttaaaaa cattatgcta agtgaaagaa
 ggcagataag aaagatcaca tgctatatga tcttttttgt aacaataact gggttgaaac
 ttttatttta atgggagata catgccttaa gttgtgaata tattaaagaa CAATTTTCCA
 GTGT

  GeneView back to top
GeneView via analysis of contig annotation: SUNC1 Sad1 and UNC84 domain containing 1
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_007819->NM_001030019
function
referenceNT_007819->NM_152782
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_007819->NM_001030019->NP_00102519047549831reverseintron
referenceNT_007819->NM_152782->NP_68999547549831reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs1915964 maps exactly once on NCBI human chromosome 7
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
7NW_001839005.217274547946360minusAalt_assembly_8HuRefHuRefview3461
7NT_007819.164754983148027398plusCref_assemblyreferencereferenceview3461
7NT_079592.24805082848100828plusTalt_assembly_2CRA_TCAGchr7v2CRA_TCAGchr7v2view3461
7NW_923273.1398480248160152plusTalt_assembly_1CeleraCeleraview3461

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007819.10
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP, NCBI
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .