NCBI GenBank

Human to Mouse Homology Region Map, Chromosome 3

How to use this Resource

RH Map Genethon Map Method In Situ Human Gene Mouse Chr. Mouse Gene Mouse Locus Cross Homology Group
3 TRH 6 Trh 43.0 21
3p PANG 6 Pang 43.5 21
SHGC-12613 4-12 R 3p ITPR1 6 Itpr1 50(g) 21
SHGC-11218 8-16 R 3p24-p26 IL5RA 6 Il5ra 47.0 c 21
SHGC-12699 23-30 R 3 ATP2B2 6 Atp2b2 48.0 21
SHGC-12045 23-30 R 3p21-14 HRH1 6 Hrh1 49.0 21
3p SYN2 6 Syn2 49.0 21
3p26.1 D3S18 6 D6H3S18 50.0 21
3p24-p25 SEC13R 6 Sec13rs-1 52.5 21
WI-7071 30-33 R,G 3p25 RAF1 6 Raf1 52.5 a, b 21
3p25 PPARG 6 Pparg 53.0 21
SHGC-10832 33-35 R 3p26-p24 SCL6A6 6* Taut 38.5(g) a 22
P 3p24.3-p24.2 RARB 14 Rarb 1.5 a, b 23
R 3p14.3 CACNL1A2 14 Cchl1a2 8.0 24
3p14-p21 WNT5A 14 Wnt5a 8.0 b 24
3p21.1 D3S92 9 D9H3S92 S 25
3p21.1 D3S93 9 D9H3S93 S 25
3p22-p21.1 PTHR 9 Pthr 58.0 a 25
3p21 GNAT1 9 Gnat1 59.0 b 25
P 3p21.3-p21.2 GNAI2 9 Gnai2 59.0 b 25
stSB1354 35-36 R 3p21.1 ACY1 9 Acy1 60.0 25
WI-8710 35-36 R 3p21-q21 LAMB2 9 Lamb2 60.0 b 25
3p21.3-p21.2 APEH 9 Apeh 60.0 25
G 3p21.3 MST1 9 Hgfl 60.0 b 25
3p21 DAG1 9 Dag1 60.0 25
R 3p21 LTF 9 Ltf 61.0 25
3p21 COL7A1 9 Col7a1 61.0 b 25
R 3p21.3-p21.2 MYL3 9 Mylc 61.0 25
3p22 TGFBR2 9 Tgfbr2 62.0 a 25
3p23-p22 MLH1 9 Mlh1 62.0 25
M34423 49-55 R 3p22-p21.3 GLB1 9 Bg1 66.0 25
3p21 SCN5A 9 Scn5a 70.0 25
stSG4228 63-67 R 3p22-p21.3 CCK 9 Cck 71.0 a, b 25
L17326 63-67 R 3p23-p21 NKTR 9 Nktr 71.0 b 25
SGC32929 63-67 R 3 TNA 9 Tna 71.0 25
3p21 CMKBR1 9 Cmkbr1 72.0 25
3p21 CATNB 9 Catnb 72.0 25
SHGC-11985 65-67 R 3p21.1-p21.2 ITIH1 14* Itih1 S 26
stSG3839 63-77 R 3 PRKCD 14* Prkcd 15.5 c 26
SHGC-11985 63-67 R 3p13-p12 ITIH3 14* Itih3 S 26
P,R 3p14.2 PTPRG 14 Ptprg 2(g) 27
WI-9056 80-85 R 3 1922(u) 14 AA144896(a) 2.5 a 27
WI-7914 101-108 R 3p14.1-p12.2 MITF 6 Mitf 40.0 28
D12887 111-113 R 3p11 PIT1 16 Pit1 43.5 b 29
3 D16ROS2 16 D16Ros2 40.3 29
P,G 3q11-q13 STF1 16* Stf1 22.9 b 30
3q13.3 DRD3 16* Drd3 23.3 b 30
3q13.3-21 CASR 16* Casr 26.3 a 30
3q2 AKU 16* aku 26.0 30
SHGC-12394 139 R 3q13.3-q21 CD28LG 16* Cd80 28.0 30
SHGC12345 142-143 R 3 ITGB5 16* AA049354(a) 28.0 a 30
3q13.2-q21 ADCY5 16* Adcy5 S 30
SGC31114 143-148 G,P,R 3q21.3-24 RHO 6* Rho 51.5(g) 31
SHGC-10822 143-148 R 3q21-q25 RPN1 6* Rpn1 S 31
SHGC9745 154-156 R 3q21-q22 RBP1 9* Rbp1 50(g) 32
P,G 3q21 TF 9* Trf(g) 56.0 a, b 32
G,P 3q23-q25 CP 9* Cp 55(g) 32
3 GSHPX1 9* Gpx 57.0 32
3p11-qter RBP2 9* Rbp2 57.0 32
stSG1549 148-156 R 3q22 RYK 9* Ryk 61(g) 32
Cda0ae10 69-171 R 3 20990(u) 3 W65555(a) 29.6 a 33
3q21-q27 MME 3 Mme 29.6 a 33
X63597 178-179 R 3q25-26 SI 3 Si-s 31.9 c 33
WI-7070 176-179 R 3q25 PTX3 3 Ptx3 33.8 33
SHGC-14841 164-186 R 3q21-q25 CPA3 3* Cpa3 13.2 34
WI-8859 186-188 R 3 PKCL 3* Pkcl 13.8 34
P 3q24-q28 EVI1 3* Evi1 14.4 a, b 34
G,P 3q26 SLC2A2 3* Glut2 14.4 b 34
3q27 FIM3 3* Fim3 14.4 b 34
SGC33411 198-200 R 3 13094(u) 16 AA123145(a) 14.0 a 35
3q27 THPO 16 Thpo(g) 12.5(g) 35
3q21-qter dbEST18389 16 D16Xrf284 14.2 35
D26135 207 R 3q27-q28 DAGK3 16 Dagk3 15.5 35
3q27-29 CRARF 16 Crarf S 35
A004030 207-213 R,G 3q28 SST 16 Smst 19.0 a, b 35
R 3q26-qter APOD 16 Apod 20.8 b, c 35
SHGC-11209 228-230 R 3 1610(u) 16* AA000110(a) 25.0 a 36
R 3q28-q29 HRY 16* Hes1 27.0 36
3q21-qter GAP43 16* Gap43 29.5 a, b 36

Human/Mouse Homology Mapping Methods

MethodDescription
CHigh-resolution cytogenetic methods
GGenetic linkage mapping
G*Genetic mapping, with disagreements between genetic and physical map resolved in favor of physical map
LLong-range restriction site mapping
PMultiple physical methods, including YAC and cosmid contigs
RRadiation hybrid mapping
XMultiple sources of high-resolution data

Gene Notes:

KeyDescription
aGene Bank Accession Number for Mouse EST
bGene order has been changed from that shown in the chromosome committee reports or online databases, as required by high-resolution human physical mapping data; these data also indicate a probable difference between human and mouse organization, e.g. a small inversion in one species
gMouse gene order has been changed slightly to conform with human gene order in the absence of conflicting high resolution data
yPosition has been changed from that reported in chromosome committee report or or Mouse Genome Database based on additional data or review of previous data
pDifferent sources of high resolution mapping data give conflicting positions
rDifference between position in inbred mice vs. Mus spretus
uThis is a UniGene designation, given since no gene symbol has been assigned. Note: some of these designations may be retired.

Mouse Locus Notes

The notation S in the Mouse Locus column indicates a gene that is syntenic, but for which there is not enough data to assign a precise position.

Cross Information

The cross column indicates which laboratory mapped a given cross.

a - Duke/Davis cross

b - Frederick cross

c - Jackson Lab cross

RH Notes

This field contains the marker identification used in Radiation Hybrid Mapping. These hyperlinks will connect the user to the Gene Map of the Human Genome. Subsequent hyperlinks on the marker will provide marker details and hyperlink to the actual Human Gene Map region (by selecting the interval defined by the Genethon Map loci intervals). Therefore the user can rapidly obtain information on ESTs that have

Color Key for Homology Map
Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr. Mouse Chr.
1 2 3 4 5 6
7 8 9 10 11 12
13 14 15 16 17 18
19 20 21 22 X

The asterisk character ('*') is used to indicate a different region of homology on the same mouse chromosome.

A question mark ('?') indicates that the authors are uncertain that this region is truly homologous.