proteins
| 15 proteins |
R | COG2118 | DNA-binding protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Thermoplasma acidophilum (Thermoplasmatales | Thermoplasmata) | ||||
| Ta0052 | ||||
124 letters 0
0 610 = |||Ta0052 (124) = 0
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ta0052
(124 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
Ta0052 239 7e-64
TVN0008 201 2e-52
MTH1615 93 1e-19
SSO0352 91 3e-19
AF2068 90 7e-19
MK1619 86 2e-17
MA4116 85 3e-17
APE1088a 84 7e-17
MJ0691 83 9e-17
PAB0620 78 4e-15
MA0627 40 8e-04
YNL061w_1 37 0.009
alr2338_1 35 0.021
BBQ47 35 0.027
HI0383 35 0.035
ECs4049 34 0.060
ECU08g0030 34 0.060
ECU01g1510 34 0.060
ECU01g0100 34 0.060
VCA0171_3 34 0.060
TP0470_2 33 0.079
BBL40 33 0.13
HP0528_2 33 0.13
BH2836 32 0.18
VC2370_1 32 0.23
jhp0477_2 32 0.30
YDR283c_1 30 0.67
YAL035w_1 30 0.67
sll1672_1 30 0.87
YPL009c_1 30 0.87
MJ1505_1 28 4.3
lin2629_2 27 5.6
slr1147_2 27 7.4
# >Ta0052
# Length = 124
#
# Score = 239 bits (610), Expect = 7e-64
# Identities = 124/124 (100%), Positives = 124/124 (100%)
#
# Query: 1 MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD 60
# MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD
# Sbjct: 1 MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD 60
#
# Query: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE 120
# PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE
# Sbjct: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE 120
#
# Query: 121 RRSK 124
# RRSK
# Sbjct: 121 RRSK 124
#
#
# >TVN0008
# Length = 124
#
# Score = 201 bits (511), Expect = 2e-52
# Identities = 103/124 (83%), Positives = 113/124 (91%)
#
# Query: 1 MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD 60
# M + KV+ M DDEELE+IRR+Q+E +QRQAMQ QM EE+EKQRE E+ARRQQILRQILD
# Sbjct: 1 MRNSYKVIEMSDDEELEKIRRRQMEELQRQAMQRQMAEEEEKQREIEKARRQQILRQILD 60
#
# Query: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE 120
# PSARERLNNVRLVRPDLADNVENQLIQLASMGRINR++ E DIIDILSKLTENKREPKIE
# Sbjct: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRIIKESDIIDILSKLTENKREPKIE 120
#
# Query: 121 RRSK 124
# RRSK
# Sbjct: 121 RRSK 124
#
#
# >MTH1615
# Length = 111
#
# Score = 92.8 bits (229), Expect = 1e-19
# Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREE-QEKQREAERARRQQILRQILDPSARERLNNVRLV 73
# +LE IRR+++ +Q++A Q+ M E QE+ R+ +++QI+ QIL P AR RL N+RL
# Sbjct: 3 DLEEIRRKKMLELQQKAQQQAMEAEAQEQMRQQLEMQKKQIMMQILTPEARSRLANLRLT 62
#
# Query: 74 RPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERR 122
# RPD + +E QLIQLA MGR+ +++ + ++L ++ KRE KI R+
# Sbjct: 63 RPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKKREIKISRK 111
#
#
# >SSO0352
# Length = 118
#
# Score = 91.3 bits (225), Expect = 3e-19
# Identities = 50/115 (43%), Positives = 82/115 (70%), Gaps = 9/115 (7%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQREAE-RARRQQILRQILDPSARERLNNV 70
# DDEELE E ++R+A QEQ R E+E++R+AE ++++ ILR IL P AR+RL N+
# Sbjct: 8 DDEELE-------ELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNI 60
#
# Query: 71 RLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLT-ENKREPKIERRSK 124
# +LV+P+ A+++ENQLI LA GRI +++ ++ IL +++ +N+R+ KI+ R +
# Sbjct: 61 KLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIRER 115
#
#
# >AF2068
# Length = 111
#
# Score = 90.1 bits (222), Expect = 7e-19
# Identities = 46/109 (42%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNVRLV 73
# ++LE IRR++L +QRQ E++++E E +R+ E A+++ ILR IL+P A+ERL+ ++L
# Sbjct: 5 DDLEEIRRRKLMELQRQKELEELQKE-EMRRQVE-AQKKAILRAILEPEAKERLSRLKLA 62
#
# Query: 74 RPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERR 122
# P++A+ VENQLI LA GRI ++++ +++IL ++ KRE +I R+
# Sbjct: 63 HPEIAEAVENQLIYLAQAGRIQSKITDKMLVEILKRVQPKKRETRIIRK 111
#
#
# >MK1619
# Length = 117
#
# Score = 85.5 bits (210), Expect = 2e-17
# Identities = 46/106 (43%), Positives = 70/106 (65%), Gaps = 2/106 (1%)
#
# Query: 13 DEELERIRRQQLESMQR--QAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNV 70
# D ELERIRR+++ +QR + QE+ EE+ +++ E A+R+ +LR+IL P ARERL V
# Sbjct: 3 DPELERIRRKKIMELQRKLEESQEKKVEEEREKKALEEAQRRAMLRRILTPEARERLARV 62
#
# Query: 71 RLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKRE 116
# RL RP LA VEN L+QLA G++ + E + IL ++++ R+
# Sbjct: 63 RLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILKQVSDATRK 108
#
#
# >MA4116
# Length = 122
#
# Score = 84.7 bits (208), Expect = 3e-17
# Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
#
# Query: 13 DEELERIRRQQLESMQRQAMQEQMRE-----EQEKQREAERARRQQILRQILDPSARERL 67
# D+ELE IR+++L +QRQ Q+Q + +QE+ R A++Q ILRQIL P ARERL
# Sbjct: 8 DDELEEIRKRRLAEIQRQQAQQQPSDVQAAYQQEQARAEMEAQKQAILRQILTPEARERL 67
#
# Query: 68 NNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIER 121
# +++ RP L + +E QLI LA GR+ + + + +L ++ KR+ I R
# Sbjct: 68 TTLKMSRPALGEQLEMQLISLAQSGRLKAQIDDEQLKTLLMRMQPKKRKTSITR 121
#
#
# >APE1088a
# Length = 115
#
# Score = 83.6 bits (205), Expect = 7e-17
# Identities = 47/118 (39%), Positives = 77/118 (64%), Gaps = 6/118 (5%)
#
# Query: 8 MHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERL 67
# M + D+ELE IRR+++ +QR+ +E+ REE++ + RA++ ILR++L ARERL
# Sbjct: 1 MSYEYDDELEEIRRRKMLELQRRLEEERRREEEQARL---RAQKDAILRRLLTSKARERL 57
#
# Query: 68 NNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKR---EPKIERR 122
# N+RLVRP++A+ EN +IQL GRI + + ++ IL +L + R E +I+R+
# Sbjct: 58 ANLRLVRPEIAEAAENAVIQLVQTGRITPPVDDDTLVQILLELDRSTRRDFEIRIKRK 115
#
#
# >MJ0691
# Length = 109
#
# Score = 83.2 bits (204), Expect = 9e-17
# Identities = 46/111 (41%), Positives = 75/111 (67%), Gaps = 6/111 (5%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNVRLVR 74
# ++E I+R++L +Q++ ++Q +EE + E ++ + +LR+IL P ARERL +RL R
# Sbjct: 2 DVEEIKRKKLLELQKKLAEQQQQEEALLEAEMQK---RALLRKILTPEARERLERIRLAR 58
#
# Query: 75 PDLADNVENQLIQLASMGRINRMLSERD---IIDILSKLTENKREPKIERR 122
# P+ A+ VE QLIQLA +GR+ LS+ D +++ +S LT+ KRE KI R+
# Sbjct: 59 PEFAEAVEVQLIQLAQLGRLPIPLSDEDFKALLERISALTKRKREIKIVRK 109
#
#
# >PAB0620
# Length = 115
#
# Score = 77.8 bits (190), Expect = 4e-15
# Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 2/109 (1%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAE-RARRQQILRQILDPSARERLNNVRL 72
# E++E IRR++L +QR+ +++Q +E+E +++A A+ Q ILR+IL P ARERL VRL
# Sbjct: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERLARVRL 65
#
# Query: 73 VRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKL-TENKREPKIE 120
# VRP+LA VE L+QL G+I + + + IL+++ +RE +I+
# Sbjct: 66 VRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIK 114
#
#
# >MA0627
# Length = 656
#
# Score = 40.0 bits (92), Expect = 8e-04
# Identities = 31/116 (26%), Positives = 58/116 (49%), Gaps = 19/116 (16%)
#
# Query: 13 DEELERIRRQQLES-------MQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARE 65
# +E+L ++ +QQ+E +R A E+ R E E+Q EAER R Q+ ++ + +E
# Sbjct: 321 EEKLSQLEKQQMEKEKQAKAERERLAQLERERIEAERQAEAERKRLAQLESELQEARRQE 380
#
# Query: 66 RLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIER 121
# V +E +L ++ + I R ER ++ + + TE +R+ ++ER
# Sbjct: 381 ETERV--------TRLEKELKEVQAQEEIRR---ER-LVQLERECTEARRQAEVER 424
#
#
#
# Score = 30.0 bits (66), Expect = 0.87
# Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 18/104 (17%)
#
# Query: 17 ERIRRQQLESMQRQAMQEQMREEQEK----QREAERA---RRQQILRQILDPSARERLNN 69
# E IRR++L ++R+ + + + E E+ Q E+ER RR ++ R+ L RER
# Sbjct: 399 EEIRRERLVQLERECTEARRQAEVEREGLAQLESERTEVERRAEVERERLAQLERERTEV 458
#
# Query: 70 VRLVR------PDL--ADNVE-NQLIQLA--SMGRINRMLSERD 102
# R V PD A+ ++ ++++ A +GRI+ ++ + D
# Sbjct: 459 ERRVEAAGKEIPDFLSANTIKTDRVVNTAGEDLGRIDELMIDLD 502
#
#
# >YNL061w_1
# Length = 195
#
# Score = 36.6 bits (83), Expect = 0.009
# Identities = 17/65 (26%), Positives = 32/65 (49%)
#
# Query: 3 SHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPS 62
# +HP DD+ +LE + Q +E++ ++ +E+ E +E + E A Q IL
# Sbjct: 125 AHPIFSDDDDEADLEELNAQNMEALSKKLDEEEAEEAEEAEMELVEAENMQPRADILPTE 184
#
# Query: 63 ARERL 67
# +E +
# Sbjct: 185 EQEEM 189
#
#
# >alr2338_1
# Length = 449
#
# Score = 35.4 bits (80), Expect = 0.021
# Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
#
# Query: 17 ERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQIL-RQILDPSARERLNNVRLVRP 75
# E I++ Q E + +Q+ EE+E +E R QQ+L RQ+ + A+ + ++
# Sbjct: 46 EEIKKLQTEKDRLTDEVQQLIEEKEHLQEVRRITEQQVLIRQLSEALAKHICSQLQSSLA 105
#
# Query: 76 DLADNVENQLIQLASMGRINRMLSERDIID-ILSKLTEN 113
# +A+ E+Q+ L S I + + ++ +L L +N
# Sbjct: 106 KIANQTESQIAALKSAQSIGPAIENNEQVEKMLGSLDDN 144
#
#
# >BBQ47
# Length = 345
#
# Score = 35.0 bits (79), Expect = 0.027
# Identities = 17/45 (37%), Positives = 33/45 (72%), Gaps = 3/45 (6%)
#
# Query: 11 DDDEELERIRRQQLESMQ--RQAMQEQMREEQEKQREAERARRQQ 53
# +D EE+E+ ++Q++E Q +Q +E+ R++QE+Q E +R R++Q
# Sbjct: 151 EDKEEIEK-QKQEVEKAQERKQRQEEKKRKKQEQQEEKKRKRQEQ 194
#
#
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 11/36 (30%), Positives = 25/36 (68%)
#
# Query: 17 ERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQ 52
# ER +RQ+ + ++Q QE+ + ++++QR+ RA+ +
# Sbjct: 168 ERKQRQEEKKRKKQEQQEEKKRKRQEQRKERRAKNK 203
#
#
#
# Score = 27.7 bits (60), Expect = 4.3
# Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
#
# Query: 11 DDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNV 70
# ++DE+ E I +Q+ E + QE+ + ++EK+R+ + + ++ ++ R N +
# Sbjct: 148 EEDEDKEEIEKQKQEV---EKAQERKQRQEEKKRKKQEQQEEKKRKRQEQRKERRAKNKI 204
#
# Query: 71 RLVRPDLADNVE 82
# + LAD ++
# Sbjct: 205 K----KLADKID 212
#
#
# >HI0383
# Length = 372
#
# Score = 34.7 bits (78), Expect = 0.035
# Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
#
# Query: 6 KVMHMDDDEELERIRRQQLESMQRQA--MQEQMREEQ-EKQREAERARRQQ 53
# ++ H + + E ++RQQ + Q++ QEQ R+E EKQ++AE A+ +Q
# Sbjct: 95 EIKHQQEVQRQEELKRQQEQQRQQEIKKQQEQARQEALEKQKQAEEAKAKQ 145
#
#
#
# Score = 30.0 bits (66), Expect = 0.87
# Identities = 12/45 (26%), Positives = 28/45 (61%)
#
# Query: 13 DEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQ 57
# +E+ +++++ Q QE+++ +QE+QR+ E ++Q+ RQ
# Sbjct: 85 EEKPPEPNQEEIKHQQEVQRQEELKRQQEQQRQQEIKKQQEQARQ 129
#
#
#
# Score = 26.6 bits (57), Expect = 9.6
# Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
#
# Query: 17 ERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSAR 64
# E+ R+Q+++ Q QA QE + E+Q++ EA+ + + + D A+
# Sbjct: 113 EQQRQQEIKKQQEQARQEAL-EKQKQAEEAKAKQAAEAAKLKADAEAK 159
#
#
#
# Score = 26.6 bits (57), Expect = 9.6
# Identities = 12/34 (35%), Positives = 21/34 (61%)
#
# Query: 24 LESMQRQAMQEQMREEQEKQREAERARRQQILRQ 57
# +E + QE+++ +QE QR+ E R+Q+ RQ
# Sbjct: 84 VEEKPPEPNQEEIKHQQEVQRQEELKRQQEQQRQ 117
#
#
# >ECs4049
# Length = 890
#
# Score = 33.9 bits (76), Expect = 0.060
# Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
#
# Query: 12 DDEELERI------RRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARE 65
# D +E ER+ +R+ E +R+A + RE Q+K AER +Q R+ + + RE
# Sbjct: 95 DPQEAERLAAEEQAQREAEEQARREAEESAKREAQQK---AEREAAEQAKREAAEQAKRE 151
#
# Query: 66 RLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERRSK 124
# D V NQ + + + E++ ++ K E R K+E ++
# Sbjct: 152 AAEK---------DKVSNQQDDMTKNAQAEKARREQEAAELKRKAEEEARR-KLEEEAR 200
#
#
#
# Score = 29.6 bits (65), Expect = 1.1
# Identities = 21/56 (37%), Positives = 32/56 (56%), Gaps = 6/56 (10%)
#
# Query: 2 ASHPKVMHMDDD----EELERIRRQQ-LESMQRQAMQEQMRE-EQEKQREAERARR 51
# A KV + DD + E+ RR+Q ++R+A +E R+ E+E +R AE ARR
# Sbjct: 153 AEKDKVSNQQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARR 208
#
#
# >ECU08g0030
# Length = 619
#
# Score = 33.9 bits (76), Expect = 0.060
# Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARER 66
# DDE + R E +R+ ++E E+ K+RE ERA+ ++ L ++++ RE+
# Sbjct: 304 DDESINNAVR---EVRERKRLEEMREMEERKRREEERAKNEEELLRMVEREEREK 355
#
#
# >ECU01g1510
# Length = 619
#
# Score = 33.9 bits (76), Expect = 0.060
# Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARER 66
# DDE + R E +R+ ++E E+ K+RE ERA+ ++ L ++++ RE+
# Sbjct: 304 DDESINNAVR---EVRERKRLEEMREMEERKRREEERAKNEEELLRMVEREEREK 355
#
#
# >ECU01g0100
# Length = 619
#
# Score = 33.9 bits (76), Expect = 0.060
# Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARER 66
# DDE + R E +R+ ++E E+ K+RE ERA+ ++ L ++++ RE+
# Sbjct: 304 DDESINNAVR---EVRERKRLEEMREMEERKRREEERAKNEEELLRMVEREEREK 355
#
#
# >VCA0171_3
# Length = 205
#
# Score = 33.9 bits (76), Expect = 0.060
# Identities = 13/50 (26%), Positives = 35/50 (70%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSA 63
# ++ ++ ++QQ + Q+Q Q+Q +++Q++Q++ ++ ++QQ +Q D S+
# Sbjct: 3 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDSSS 52
#
#
#
# Score = 28.5 bits (62), Expect = 2.5
# Identities = 9/47 (19%), Positives = 29/47 (61%)
#
# Query: 2 ASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAER 48
# A+ + ++ ++ ++QQ + Q+Q Q+Q +++Q++Q++ ++
# Sbjct: 1 AAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 47
#
#
#
# Score = 28.1 bits (61), Expect = 3.3
# Identities = 9/47 (19%), Positives = 28/47 (59%)
#
# Query: 2 ASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAER 48
# A + ++ ++ ++QQ + Q+Q Q+Q +++Q++Q++ ++
# Sbjct: 2 AQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 48
#
#
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 10/40 (25%), Positives = 26/40 (65%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQ 53
# ++ ++ ++QQ + Q+Q Q+Q +++Q++Q + A Q+
# Sbjct: 19 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDSSSGASGQE 58
#
#
#
# Score = 26.9 bits (58), Expect = 7.4
# Identities = 9/32 (28%), Positives = 24/32 (74%)
#
# Query: 26 SMQRQAMQEQMREEQEKQREAERARRQQILRQ 57
# + Q+Q Q+Q +++Q++Q++ ++ ++QQ +Q
# Sbjct: 2 AQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 33
#
#
# >TP0470_2
# Length = 195
#
# Score = 33.5 bits (75), Expect = 0.079
# Identities = 22/91 (24%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQILRQILDPSARERLNNVR 71
# +E E RR++ E +R+ +E R+E E +++EAE ARR++ + R
# Sbjct: 84 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAE 143
#
# Query: 72 LVRPDLADNVENQLIQLASMGRINRMLSERD 102
# R A+ + + ++ R R+ D
# Sbjct: 144 EARRKEAEEARRKEAEFEALKRALRLKQAED 174
#
#
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQ 53
# +E E RR++ E +R+ +E R+E E +++EAE ARR++
# Sbjct: 52 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKE 93
#
#
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQ 53
# +E E RR++ E +R+ +E R+E E +++EAE ARR++
# Sbjct: 20 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKE 61
#
#
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQ 53
# +E E RR++ E +R+ +E R+E E +++EAE ARR++
# Sbjct: 76 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKE 117
#
#
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQ 53
# +E E RR++ E +R+ +E R+E E +++EAE ARR++
# Sbjct: 44 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKE 85
#
#
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQ 53
# +E E RR++ E +R+ +E R+E E +++EAE ARR++
# Sbjct: 36 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKE 77
#
#
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQE--KQREAERARRQQ 53
# +E E RR++ E +R+ +E R+E E +++EAE ARR++
# Sbjct: 60 KEAEEARRKEAEEARRKEAEEARRKEAEEARRKEAEEARRKE 101
#
#
#
# Score = 26.6 bits (57), Expect = 9.6
# Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQR--EAERARRQQ 53
# E++R+ + +QR+ +E R+E E+ R EAE ARR++
# Sbjct: 5 EVQRMIAALEQWLQRKEAEEARRKEAEEARRKEAEEARRKE 45
#
#
# >BBL40
# Length = 378
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMR--EEQEKQREAERARRQQILRQILDPSARERLNNVR 71
# EE ++ R+ + E +R+ QE+ + EEQE++ +AE+ +++ RQ + + + R
# Sbjct: 154 EEEQQKRKAEQEKQKREEEQERQKREEEQERKAKAEKEAKEKAERQKQEEQQKRKAEKER 213
#
# Query: 72 LVRPDLAD--NVENQLIQLASMGRINRMLSERDII 104
# + A+ V+N++ L G+I+ + D+I
# Sbjct: 214 EEQRKEAEKRQVDNEIRTLT--GKIDEINRNIDVI 246
#
#
#
# Score = 31.2 bits (69), Expect = 0.39
# Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
#
# Query: 11 DDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAER--ARRQQILRQI 58
# ++ E + ++ E +RQ +EQ + + EK+RE +R A ++Q+ +I
# Sbjct: 180 EEQERKAKAEKEAKEKAERQKQEEQQKRKAEKEREEQRKEAEKRQVDNEI 229
#
#
#
# Score = 30.4 bits (67), Expect = 0.67
# Identities = 13/58 (22%), Positives = 35/58 (59%), Gaps = 3/58 (5%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQ---REAERARRQQILRQILDPSARER 66
# ++ + + +Q+ E +R+A QE+ + E+E++ RE E+ R+ + ++ + + R++
# Sbjct: 143 EERNKQELAKQEEEQQKRKAEQEKQKREEEQERQKREEEQERKAKAEKEAKEKAERQK 200
#
#
#
# Score = 26.6 bits (57), Expect = 9.6
# Identities = 11/48 (22%), Positives = 27/48 (55%)
#
# Query: 6 KVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQ 53
# KV + E + +++ E +Q + +Q E+Q+++ E E+ +R++
# Sbjct: 124 KVEESEAKVEGKEEKQENTEERNKQELAKQEEEQQKRKAEQEKQKREE 171
#
#
# >HP0528_2
# Length = 157
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 25/120 (20%), Positives = 64/120 (52%), Gaps = 4/120 (3%)
#
# Query: 7 VMHMDDDEELERIRRQ-QLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDP-SAR 64
# ++ D +ELE ++ + E ++ Q+ ++++EK++E ERA+ + L + + S
# Sbjct: 27 IVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKE-ERAKNRANLENLTNAMSNP 85
#
# Query: 65 ERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERRSK 124
# + L+N + + + EN+L Q+ + + ++ + + + +L + + E I++R+K
# Sbjct: 86 QNLSNNKNLSEFIKQQRENELDQMERLEDMQEQ-AQANALKQIEELNKKQAEETIKQRAK 144
#
#
# >BH2836
# Length = 239
#
# Score = 32.3 bits (72), Expect = 0.18
# Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
#
# Query: 6 KVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQE--------------------KQRE 45
# +V+H + + E RIR ++ E+ M +++++E E K+RE
# Sbjct: 27 RVIHAEAELEKYRIRVKKYENDYYYGMIDELKQENEALSAQLSKYERLEELVTEMTKERE 86
#
# Query: 46 AERARRQQILRQILDPSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIID 105
# RA ++ Q+ + ARE++ V V + ++V+ + I+ A E + ++
# Sbjct: 87 RLRATIVELEEQLENMQAREKVAEVESVE-ERVEDVQQEAIEDAGQ---EEKSHEGEAVE 142
#
# Query: 106 ILSKLTENKREPKIERRS 123
# + E K EP+++ +
# Sbjct: 143 STEGVKEQKVEPQLDNET 160
#
#
# >VC2370_1
# Length = 391
#
# Score = 32.0 bits (71), Expect = 0.23
# Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
#
# Query: 32 MQEQMREEQEKQREAE--RARRQQILRQILDPS 62
# MQ Q+REE EK+R+ E A+R IL+ IL+ S
# Sbjct: 254 MQRQLREEMEKRRDTEVALAQRDTILQNILESS 286
#
#
# >jhp0477_2
# Length = 157
#
# Score = 31.6 bits (70), Expect = 0.30
# Identities = 24/120 (20%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
#
# Query: 7 VMHMDDDEELERIRRQ-QLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDP-SAR 64
# ++ D +ELE ++ + E ++ Q+ ++++EK++E ERA+ + L + + S
# Sbjct: 27 IVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKE-ERAKNRANLENLTNAMSNP 85
#
# Query: 65 ERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERRSK 124
# + L+N + + + EN+L Q+ + + ++ + + + +L + + E + +R+K
# Sbjct: 86 QNLSNNKNLSELIKQQRENELDQMERLEDMQEQ-AQANALKQIEELNKKQAEEAVRQRAK 144
#
#
# >YDR283c_1
# Length = 1000
#
# Score = 30.4 bits (67), Expect = 0.67
# Identities = 12/45 (26%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
#
# Query: 12 DDEELERIR--RQQLESMQRQAMQEQMREEQEKQREAERARRQQI 54
# +D+ L+RI+ ++QLE +R+ QE +++ ++QR + ++++
# Sbjct: 138 EDDRLQRIKETKEQLEKEEREKQQETIKKRSDEQRRIDEIVQREL 182
#
#
# >YAL035w_1
# Length = 398
#
# Score = 30.4 bits (67), Expect = 0.67
# Identities = 16/47 (34%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
#
# Query: 10 MDDDEELERIRRQQLESMQ--RQAMQEQMREE-QEKQREAERARRQQ 53
# +++ E+LER ++LE + R A +E+M+EE + ++E E+A+R++
# Sbjct: 183 LEEQEKLEREEEERLEKEEEERLANEEKMKEEAKAAKKEKEKAKREK 229
#
#
# >sll1672_1
# Length = 366
#
# Score = 30.0 bits (66), Expect = 0.87
# Identities = 17/41 (41%), Positives = 24/41 (58%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQIL 55
# E ER + Q + Q Q Q +E +QRE ERA+R++IL
# Sbjct: 298 ENERSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKIL 338
#
#
# >YPL009c_1
# Length = 753
#
# Score = 30.0 bits (66), Expect = 0.87
# Identities = 12/35 (34%), Positives = 22/35 (62%)
#
# Query: 11 DDDEELERIRRQQLESMQRQAMQEQMREEQEKQRE 45
# DD+EE E ++ E + + +E+ +EE+EK+ E
# Sbjct: 718 DDEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKEEE 752
#
#
#
# Score = 28.1 bits (61), Expect = 3.3
# Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 6/43 (13%)
#
# Query: 11 DDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQ 53
# DDDEE E E + + +E+ EE+E+++E E +Q
# Sbjct: 717 DDDEEEEE------EEEEEEEEEEEEEEEEEEEKEEEEKEEEQ 753
#
#
# >MJ1505_1
# Length = 580
#
# Score = 27.7 bits (60), Expect = 4.3
# Identities = 12/32 (37%), Positives = 24/32 (74%), Gaps = 2/32 (6%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQRE 45
# EE E I+ +++ES + A++E+ +EE+EK ++
# Sbjct: 510 EETEEIKEKEIES--KTAVKEETKEEEEKTKK 539
#
#
# >lin2629_2
# Length = 341
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREE-QEKQREAERARRQQILR-QILDPSARERLNN 69
# ++E LER RR+ E +R A + + R+E +E R + RQ+ +R + + AR +
# Sbjct: 5 NEEVLERHRRRVDEKRRRHADRNEARQEVREAMRNSRHHNRQKPVRPEPIHHGARRKEAR 64
#
# Query: 70 VRLVR 74
# R VR
# Sbjct: 65 PRPVR 69
#
#
# >slr1147_2
# Length = 282
#
# Score = 26.9 bits (58), Expect = 7.4
# Identities = 16/60 (26%), Positives = 29/60 (47%)
#
# Query: 28 QRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNVRLVRPDLADNVENQLIQ 87
# Q+Q Q EEQ +Q + ER +L Q+ +P + + L++ DN Q+++
# Sbjct: 5 QQQDWYRQAWEEQNQQYQWERQHWADLLHQLRNPLTALKTFSKLLLKRWHGDNKSQQVVE 64
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.130 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,316,993
Number of Sequences: 192987
Number of extensions: 368287
Number of successful extensions: 4510
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 3252
Number of HSP's gapped (non-prelim): 887
length of query: 124
length of database: 59,019,183
effective HSP length: 100
effective length of query: 24
effective length of database: 39,720,483
effective search space: 953291592
effective search space used: 953291592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)