proteins
| 15 proteins |
R | COG2118 | DNA-binding protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Thermoplasma acidophilum (Thermoplasmatales | Thermoplasmata) | ||||
| Ta0052 | ||||
124 letters (r) 0
0 337 = ||| 1 Ta0052 (124) = 0
-12
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ta0052
(124 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
Ta0052 134 4e-32
TVN0008 102 2e-22
MTH1615 51 5e-07
SSO0352 48 3e-06
PAE3044 47 6e-06
AF2068 46 1e-05
PAB0620 43 1e-04
MA4116 43 1e-04
PH1060 42 2e-04
MK1619 41 3e-04
APE1088a 41 3e-04
SPAC23C4.09c 40 6e-04
MJ0691 39 0.001
YMR074c 33 0.12
sll1672_1 33 0.13
VNG2008H 30 0.62
PAE1597 30 0.64
VC2370_1 30 0.69
alr1742 30 0.82
sll0776 30 1.1
PM0057 29 1.5
Ta0497 29 1.6
BS_yvgK 29 2.2
MA0627 28 2.3
Cgl1868 28 2.3
YER008c 28 3.2
HI0615 28 3.6
PM0059 28 3.8
yacH 28 3.8
SPAC3A11.09 28 4.0
PA1708 27 5.3
slr1484 27 6.5
SPAC18G6.05c 27 7.3
MA3342 27 7.4
DR0084 27 7.4
VC1764 27 8.2
CPn0041 27 8.3
alr2338_1 27 9.2
# >Ta0052
# Length = 124
#
# Score = 134 bits (337), Expect = 4e-32
# Identities = 124/124 (100%), Positives = 124/124 (100%)
#
# Query: 1 MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD 60
# MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD
# Sbjct: 1 MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD 60
#
# Query: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE 120
# PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE
# Sbjct: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE 120
#
# Query: 121 RRSK 124
# RRSK
# Sbjct: 121 RRSK 124
#
#
# >TVN0008
# Length = 124
#
# Score = 102 bits (253), Expect = 2e-22
# Identities = 103/124 (83%), Positives = 113/124 (91%)
#
# Query: 1 MASHPKVMHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD 60
# M + KV+ M DDEELE+IRR+Q+E +QRQAMQ QM EE+EKQRE E+ARRQQILRQILD
# Sbjct: 1 MRNSYKVIEMSDDEELEKIRRRQMEELQRQAMQRQMAEEEEKQREIEKARRQQILRQILD 60
#
# Query: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIE 120
# PSARERLNNVRLVRPDLADNVENQLIQLASMGRINR++ E DIIDILSKLTENKREPKIE
# Sbjct: 61 PSARERLNNVRLVRPDLADNVENQLIQLASMGRINRIIKESDIIDILSKLTENKREPKIE 120
#
# Query: 121 RRSK 124
# RRSK
# Sbjct: 121 RRSK 124
#
#
# >MTH1615
# Length = 111
#
# Score = 50.8 bits (120), Expect = 5e-07
# Identities = 46/109 (42%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMR-EEQEKQREAERARRQQILRQILDPSARERLNNVRLV 73
# +LE IRR+++ +Q++A Q+ M E QE+ R+ +++QI+ QIL P AR RL N+RL
# Sbjct: 3 DLEEIRRKKMLELQQKAQQQAMEAEAQEQMRQQLEMQKKQIMMQILTPEARSRLANLRLT 62
#
# Query: 74 RPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERR 122
# RPD + +E QLIQLA MGR+ +++ + ++L ++ KRE KI R+
# Sbjct: 63 RPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKKREIKISRK 111
#
#
# >SSO0352
# Length = 118
#
# Score = 48.1 bits (113), Expect = 3e-06
# Identities = 50/115 (43%), Positives = 82/115 (70%), Gaps = 9/115 (7%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQREAE-RARRQQILRQILDPSARERLNNV 70
# DDEELE E ++R+A QEQ R E+E++R+AE ++++ ILR IL P AR+RL N+
# Sbjct: 8 DDEELE-------ELLRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNI 60
#
# Query: 71 RLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLT-ENKREPKIERRSK 124
# +LV+P+ A+++ENQLI LA GRI +++ ++ IL +++ +N+R+ KI+ R +
# Sbjct: 61 KLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIRER 115
#
#
# >PAE3044
# Length = 110
#
# Score = 47.4 bits (111), Expect = 6e-06
# Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 7/104 (6%)
#
# Query: 12 DDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNVR 71
# +D ELE IRR++LE +Q++A E E+Q + A+R+ L++IL P A RL+N+R
# Sbjct: 7 EDRELEEIRRKKLEELQKKA-------ELERQAQIVAAQRRIALKKILTPEALARLDNIR 59
#
# Query: 72 LVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKR 115
# +VRP+LA+ +E QLI LA+ GR+ + E + IL + R
# Sbjct: 60 VVRPELAEALEQQLINLAATGRVRVPIDEETLKKILEAVYSQTR 103
#
#
# >AF2068
# Length = 111
#
# Score = 45.8 bits (107), Expect = 1e-05
# Identities = 43/109 (39%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNVRLV 73
# ++LE IRR++L +QR +E ++E+ R A+++ ILR IL+P A+ERL+ ++L
# Sbjct: 5 DDLEEIRRRKLMELQR--QKELEELQKEEMRRQVEAQKKAILRAILEPEAKERLSRLKLA 62
#
# Query: 74 RPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERR 122
# P++A+ VENQLI LA GRI ++++ +++IL ++ KRE +I R+
# Sbjct: 63 HPEIAEAVENQLIYLAQAGRIQSKITDKMLVEILKRVQPKKRETRIIRK 111
#
#
# >PAB0620
# Length = 115
#
# Score = 42.7 bits (99), Expect = 1e-04
# Identities = 43/103 (41%), Positives = 68/103 (65%), Gaps = 1/103 (0%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAE-RARRQQILRQILDPSARERLNNVRL 72
# E++E IRR++L +QR+ +++Q +E+E +++A A+ Q ILR+IL P ARERL VRL
# Sbjct: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERLARVRL 65
#
# Query: 73 VRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKR 115
# VRP+LA VE L+QL G+I + + + IL+++ R
# Sbjct: 66 VRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTR 108
#
#
# >MA4116
# Length = 122
#
# Score = 42.7 bits (99), Expect = 1e-04
# Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
#
# Query: 13 DEELERIRRQQLESMQRQAMQE-----QMREEQEKQREAERARRQQILRQILDPSARERL 67
# D+ELE IR+++L +QRQ Q+ Q +QE+ R A++Q ILRQIL P ARERL
# Sbjct: 8 DDELEEIRKRRLAEIQRQQAQQQPSDVQAAYQQEQARAEMEAQKQAILRQILTPEARERL 67
#
# Query: 68 NNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIER 121
# +++ RP L + +E QLI LA GR+ + + + +L ++ KR+ I R
# Sbjct: 68 TTLKMSRPALGEQLEMQLISLAQSGRLKAQIDDEQLKTLLMRMQPKKRKTSITR 121
#
#
# >PH1060
# Length = 115
#
# Score = 42.0 bits (97), Expect = 2e-04
# Identities = 43/103 (41%), Positives = 67/103 (64%), Gaps = 1/103 (0%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQ-MREEQEKQREAERARRQQILRQILDPSARERLNNVRL 72
# E++E IRR++L +QR+ +++Q +EE E+Q+ A+ Q ILR+IL P ARERL V+L
# Sbjct: 6 EDIEEIRRRKLMELQRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARERLARVKL 65
#
# Query: 73 VRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKR 115
# VRP+LA VE L+QL G+I + + + IL+++ R
# Sbjct: 66 VRPELARQVELILVQLYQAGQITERIDDAKLKRILAQIEAKTR 108
#
#
# >MK1619
# Length = 117
#
# Score = 41.2 bits (95), Expect = 3e-04
# Identities = 44/106 (41%), Positives = 70/106 (65%), Gaps = 2/106 (1%)
#
# Query: 13 DEELERIRRQQLESMQRQAMQEQMREEQEKQREA--ERARRQQILRQILDPSARERLNNV 70
# D ELERIRR+++ +QR+ + Q ++ +E++ + E A+R+ +LR+IL P ARERL V
# Sbjct: 3 DPELERIRRKKIMELQRKLEESQEKKVEEEREKKALEEAQRRAMLRRILTPEARERLARV 62
#
# Query: 71 RLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKRE 116
# RL RP LA VEN L+QLA G++ + E + IL ++++ R+
# Sbjct: 63 RLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILKQVSDATRK 108
#
#
# >APE1088a
# Length = 115
#
# Score = 41.2 bits (95), Expect = 3e-04
# Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
#
# Query: 8 MHMDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERL 67
# M + D+ELE IRR++ M + + +E+++ RA++ ILR++L ARERL
# Sbjct: 1 MSYEYDDELEEIRRRK---MLELQRRLEEERRREEEQARLRAQKDAILRRLLTSKARERL 57
#
# Query: 68 NNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKR 115
# N+RLVRP++A+ EN +IQL GRI + + ++ IL +L + R
# Sbjct: 58 ANLRLVRPEIAEAAENAVIQLVQTGRITPPVDDDTLVQILLELDRSTR 105
#
#
# >SPAC23C4.09c
# Length = 131
#
# Score = 40.4 bits (93), Expect = 6e-04
# Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
#
# Query: 13 DEELERIRRQQLESMQRQAMQEQMR-----EEQEKQREAERARRQQILRQILDPSARERL 67
# DEEL+ IR+ +L +Q + ++Q+E + RQ +L QIL+ AR+RL
# Sbjct: 2 DEELQAIRQARLAQLQAEHGSAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEHPARDRL 61
#
# Query: 68 NNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLT 111
# + LVR D A+ VE L+++A G+I+ +SE ++I++L K++
# Sbjct: 62 RRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKIS 105
#
#
# >MJ0691
# Length = 109
#
# Score = 39.3 bits (90), Expect = 0.001
# Identities = 46/111 (41%), Positives = 75/111 (67%), Gaps = 6/111 (5%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNVRLVR 74
# ++E I+R++L +Q++ ++Q +EE + E + ++ +LR+IL P ARERL +RL R
# Sbjct: 2 DVEEIKRKKLLELQKKLAEQQQQEEALLEAEMQ---KRALLRKILTPEARERLERIRLAR 58
#
# Query: 75 PDLADNVENQLIQLASMGRINRMLSERD---IIDILSKLTENKREPKIERR 122
# P+ A+ VE QLIQLA +GR+ LS+ D +++ +S LT+ KRE KI R+
# Sbjct: 59 PEFAEAVEVQLIQLAQLGRLPIPLSDEDFKALLERISALTKRKREIKIVRK 109
#
#
# >YMR074c
# Length = 145
#
# Score = 32.7 bits (73), Expect = 0.12
# Identities = 20/60 (33%), Positives = 34/60 (56%)
#
# Query: 55 LRQILDPSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENK 114
# + L+P A ERL+ V LVR D A VE L +L + + ++E +I+ IL+ + + +
# Sbjct: 46 IANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQ 105
#
#
# >sll1672_1
# Length = 366
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 17/41 (41%), Positives = 24/41 (58%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQIL 55
# E ER + Q + Q Q Q +E +QRE ERA+R++IL
# Sbjct: 298 ENERSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKIL 338
#
#
# >VNG2008H
# Length = 117
#
# Score = 30.4 bits (67), Expect = 0.62
# Identities = 36/112 (32%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
#
# Query: 12 DDEELERIRRQQLESMQRQAM-QEQMREEQEKQREAERARRQQILRQILDPSARERLNNV 70
# DD+ LE +R+++ E +++Q + RE Q++Q + ++Q +L+Q L AR+RLN +
# Sbjct: 6 DDDRLEELRQRKKEQLKQQQQGGDAEREAQQQQAQQAEQQKQAMLKQNLTDGARKRLNTI 65
#
# Query: 71 RLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTENKREPKIERR 122
# R+ +P+ A+ E Q++ LA GR+ + E + +IL +L + + I RR
# Sbjct: 66 RMSKPEFAEQAEQQVLALAQSGRVQGRIDEDQMKEILRELKPDSQSFNINRR 117
#
#
# >PAE1597
# Length = 822
#
# Score = 30.4 bits (67), Expect = 0.64
# Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
#
# Query: 11 DDDEELERIRRQQLE----SMQRQAMQEQMREEQEKQREAERARRQQILR 56
# D D + R+ R+ +E SM+R A +++REE EK RE R +I R
# Sbjct: 770 DIDGRIRRVAREIVEKIKKSMERGAEYQKLREEVEKLREEYRKLLDRIAR 819
#
#
# >VC2370_1
# Length = 391
#
# Score = 30.4 bits (67), Expect = 0.69
# Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
#
# Query: 32 MQEQMREEQEKQREAE--RARRQQILRQILDPS 62
# MQ Q+REE EK+R+ E A+R IL+ IL+ S
# Sbjct: 254 MQRQLREEMEKRRDTEVALAQRDTILQNILESS 286
#
#
# >alr1742
# Length = 633
#
# Score = 30.0 bits (66), Expect = 0.82
# Identities = 18/67 (26%), Positives = 41/67 (60%), Gaps = 2/67 (2%)
#
# Query: 12 DDEELERI-RRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARERLNNV 70
# D E E+I R+ Q +S+ QA ++Q++E +K EA++ + + +++ + + A+E +
# Sbjct: 520 DKERREKIERKNQADSLAYQA-EKQLQELGDKVPEADKTKVEGLVKDLREAVAKEDDEQI 578
#
# Query: 71 RLVRPDL 77
# + + P+L
# Sbjct: 579 KKLTPEL 585
#
#
# >sll0776
# Length = 505
#
# Score = 29.6 bits (65), Expect = 1.1
# Identities = 19/46 (41%), Positives = 30/46 (64%), Gaps = 5/46 (10%)
#
# Query: 13 DEELERIRRQQ--LESMQRQAMQEQMREEQEKQR---EAERARRQQ 53
# + E +RI +Q E+ +RQ EQ R E+E+QR EAERA++++
# Sbjct: 368 EAEQKRIEAEQKIAENEKRQRELEQKRVEEERQRLAAEAERAKQER 413
#
#
# >PM0057
# Length = 2615
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 16/43 (37%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQ 57
# E R+ Q+ ES+ R A+QE++ E++R AE +RQ++L +
# Sbjct: 1052 EERRLNNQRFESLPR-ALQERLHHLFEEKRLAEDRKRQELLEK 1093
#
#
# >Ta0497
# Length = 342
#
# Score = 29.3 bits (64), Expect = 1.6
# Identities = 13/29 (44%), Positives = 18/29 (61%)
#
# Query: 24 LESMQRQAMQEQMREEQEKQREAERARRQ 52
# LE+ RQ Q R ++EK R A+ ARR+
# Sbjct: 242 LENESRQKRISQERMDREKTRAAQEARRE 270
#
#
# >BS_yvgK
# Length = 308
#
# Score = 28.9 bits (63), Expect = 2.2
# Identities = 23/69 (33%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
#
# Query: 46 AERARRQQILRQILDPSARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDI-I 104
# A R RQ ++ + ++ N+R+ +P A Q+ + GR N M+S +DI +
# Sbjct: 34 AYRVGRQM---RVDEEDLKQYKTNMRMSQPIAAKEAPKQVQEAEPDGRPNVMISGQDISM 90
#
# Query: 105 DILSKLTEN 113
# DILSK EN
# Sbjct: 91 DILSKHLEN 99
#
#
# >MA0627
# Length = 656
#
# Score = 28.5 bits (62), Expect = 2.3
# Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
#
# Query: 13 DEELERIRRQQLE-------SMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARE 65
# +E+L ++ +QQ+E +R A E+ R E E+Q EAER R Q+ ++ + +E
# Sbjct: 321 EEKLSQLEKQQMEKEKQAKAERERLAQLERERIEAERQAEAERKRLAQLESELQEARRQE 380
#
# Query: 66 RLNNVRLVRPDLADNVENQLIQLASMGRINRMLSE 100
# V + +L + + I+ + ++ R +E
# Sbjct: 381 ETERVTRLEKELKEVQAQEEIRRERLVQLERECTE 415
#
#
# >Cgl1868
# Length = 570
#
# Score = 28.5 bits (62), Expect = 2.3
# Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
#
# Query: 10 MDDDEELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILD---PSARER 66
# +D ++ E +R++Q E + + E+ R+E EKQ++ E ++ + ++ P R+
# Sbjct: 461 LDAEQMRELLRKRQEEQLDARDAAEKRRKELEKQQQREAEIHEKPVEEVASDEIPRLRKE 520
#
# Query: 67 LNNV 70
# LN +
# Sbjct: 521 LNTI 524
#
#
# >YER008c
# Length = 1336
#
# Score = 28.1 bits (61), Expect = 3.2
# Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
#
# Query: 9 HMDDDEELERIRRQQLES-------MQRQAMQEQMREEQEKQREAERARRQQILRQILDP 61
# H EE ER R+ +LE+ QRQ +EQ +++ + E +R +R+Q + L
# Sbjct: 381 HQRQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQETAERLKK 440
#
# Query: 62 SARERLNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKLTE 112
# +E L + V+N+ G+++ +L D+ +L++ TE
# Sbjct: 441 EEQEALAKKEEEEKSKRNKVDNESYTQEINGKVDNLL--EDLNAVLAEETE 489
#
#
# >HI0615
# Length = 249
#
# Score = 28.1 bits (61), Expect = 3.6
# Identities = 13/31 (41%), Positives = 19/31 (60%)
#
# Query: 82 ENQLIQLASMGRINRMLSERDIIDILSKLTE 112
# + LIQLA + +IN + S+R + D L K E
# Sbjct: 211 KTSLIQLADLSKINTIFSDRSLPDNLQKYCE 241
#
#
# >PM0059
# Length = 3919
#
# Score = 28.1 bits (61), Expect = 3.8
# Identities = 14/52 (26%), Positives = 31/52 (58%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARE 65
# +EL R+Q+ E+ Q+ +++ + ++ E+Q + R+Q+ RQ D A++
# Sbjct: 1167 QELFEKRKQKHEAEQKARIEKALLQKSEQQEKRVEERKQEEKRQAQDKIAKQ 1218
#
#
# >yacH
# Length = 617
#
# Score = 27.7 bits (60), Expect = 3.8
# Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
#
# Query: 20 RRQQLESMQRQAMQEQMREEQEKQREAERARRQQILR-QILDPSARERLNNV-----RLV 73
# RRQ L Q+ A +++ + +QR+A R R Q + Q +ARER+ + + V
# Sbjct: 451 RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPKIQQRREAARERIQSASPEQRQAV 510
#
# Query: 74 RPDLADNVENQLIQLASMGRINRMLSER 101
# R + N +NQ + A+ RI E+
# Sbjct: 511 REKMQTNPQNQQRRDAARERIQSASPEQ 538
#
#
# >SPAC3A11.09
# Length = 759
#
# Score = 27.7 bits (60), Expect = 4.0
# Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
#
# Query: 8 MHMDDDEELERIRRQQLESM---QRQAMQEQMREEQEKQREAERARRQQILRQILDPSAR 64
# +H DDE +ES R Q E ++ ER RR+Q+L I D +
# Sbjct: 623 LHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSESE 682
#
# Query: 65 E 65
# +
# Sbjct: 683 D 683
#
#
# >PA1708
# Length = 390
#
# Score = 27.3 bits (59), Expect = 5.3
# Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
#
# Query: 15 ELERIRRQQLESMQRQAMQEQMREEQEKQREAERA 49
# E+E+ R+Q L+ M+ Q+++RE +E +EA+++
# Sbjct: 132 EIEQARKQNLQKMEDN--QQKIRESEEAAKEAQKS 164
#
#
# >slr1484
# Length = 532
#
# Score = 26.9 bits (58), Expect = 6.5
# Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
#
# Query: 14 EELERIRRQQLESMQRQAMQEQMREE-QEKQREAERARRQQI 54
# EEL + R+ E QA Q Q+ EE Q +QR+ E+ R +++
# Sbjct: 425 EELRQAARRAEEEKANQARQRQLEEERQARQRQLEKEREERL 466
#
#
# >SPAC18G6.05c
# Length = 2670
#
# Score = 26.9 bits (58), Expect = 7.3
# Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
#
# Query: 23 QLESMQRQAMQEQMREEQEKQREAERARRQQILRQILDPSARER----LNNVRLVRPDLA 78
# +L + R+A+QE +E+E+ ++ +R + +LD +ER L+ + +VR D+A
# Sbjct: 1827 KLAGINRKALQE---DEEEEGTHSDVSR-----KALLDIIGQERHDRILSTLYIVRQDIA 1878
#
# Query: 79 DNVENQLIQLASMGRINRMLSERDIIDILSKL 110
# V IQ+ +N + R+I+ L+ +
# Sbjct: 1879 AVVRTPAIQIWKAIVVNTPRTVREILPTLTSI 1910
#
#
# >MA3342
# Length = 405
#
# Score = 26.9 bits (58), Expect = 7.4
# Identities = 13/32 (40%), Positives = 18/32 (55%)
#
# Query: 13 DEELERIRRQQLESMQRQAMQEQMREEQEKQR 44
# DE+ I R+QLE + Q QEQ EK++
# Sbjct: 371 DEKRRSISREQLEKLIAQVRQEQKPSASEKEK 402
#
#
# >DR0084
# Length = 438
#
# Score = 26.9 bits (58), Expect = 7.4
# Identities = 15/30 (50%), Positives = 19/30 (63%)
#
# Query: 58 ILDPSARERLNNVRLVRPDLADNVENQLIQ 87
# +LD A LN V LV PDLA VE++L +
# Sbjct: 275 LLDNVALVALNKVELVEPDLAQMVEDELAE 304
#
#
# >VC1764
# Length = 706
#
# Score = 26.9 bits (58), Expect = 8.2
# Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
#
# Query: 32 MQEQMRE--EQEKQREAERARRQQILRQILDPSARERLNNVRLVRPDLADNVENQLIQLA 89
# +++Q+ E EQ +RE + R+Q L ++ + ++ + NV L D V+NQ++QL
# Sbjct: 393 VEKQVSELGEQLTKRELAASEREQKLASSMESTIKDLVENVSAQSQVLTDFVQNQVVQL- 451
#
# Query: 90 SMGRINRMLSERD 102
# + SERD
# Sbjct: 452 -----TQTFSERD 459
#
#
# >CPn0041
# Length = 449
#
# Score = 26.9 bits (58), Expect = 8.3
# Identities = 17/65 (26%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
#
# Query: 29 RQAMQEQMREEQEKQREAERARRQQILRQILD---PSARERLNNVRLVRPDLADNVENQL 85
# R A +++ +E ++Q + ++ +R + L+++ D P A+ERL ++ + P++A +V
# Sbjct: 362 RVAFEKERSKENQRQVQKKKEKRLRDLKELHDQELPRAQERLRELQALYPEIAVSVVEAR 421
#
# Query: 86 IQLAS 90
# ++AS
# Sbjct: 422 REVAS 426
#
#
# >alr2338_1
# Length = 449
#
# Score = 26.6 bits (57), Expect = 9.2
# Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
#
# Query: 17 ERIRRQQLESMQRQAMQEQMREEQEKQREAERARRQQIL-RQILDPSARERLNNVRLVRP 75
# E I++ Q E + +Q+ EE+E +E R QQ+L RQ+ + A+ + ++
# Sbjct: 46 EEIKKLQTEKDRLTDEVQQLIEEKEHLQEVRRITEQQVLIRQLSEALAKHICSQLQSSLA 105
#
# Query: 76 DLADNVENQLIQLASMGRINRMLSERDIID-ILSKLTEN 113
# +A+ E+Q+ L S I + + ++ +L L +N
# Sbjct: 106 KIANQTESQIAALKSAQSIGPAIENNEQVEKMLGSLDDN 144
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.130 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,316,993
Number of Sequences: 192987
Number of extensions: 368287
Number of successful extensions: 4510
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 3252
Number of HSP's gapped (non-prelim): 887
length of query: 124
length of database: 59,019,183
effective HSP length: 100
effective length of query: 24
effective length of database: 39,720,483
effective search space: 953291592
effective search space used: 953291592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)