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UGID:257815     UniGene Mm.4765     Mus musculus (mouse)   Hoxc9 Order cDNA clone, Links
Homeo box C9 (Hoxc9)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_032298.1 homeobox C9 M. musculus 100.0 259
XP_001069461.1 PREDICTED: similar to Homeobox protein Hox-C9 (Hox-3.2) isoform 2 R. norvegicus 100.0 259
XP_001108256.1 PREDICTED: similar to Homeobox protein Hox-C9 (Hox-3.2) isoform 1 M. mulatta 100.0 259
XP_001136545.1 PREDICTED: homeobox C9 isoform 2 P. troglodytes 99.6 259
NP_008828.1 homeobox C9 H. sapiens 99.6 259
NP_571603.2 homeo box C9a D. rerio 78.4 259
NP_001091264.1 hypothetical protein LOC100037070 X. laevis 65.5 260
NP_650577.1 abdominal B, isoform A D. melanogaster 46.3 121

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: organogenesis [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mixed; uncharacterized tissue; mammary gland; ovary; testis; extraembryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15 F3|15 57.4 cM
UniSTS entry: Chr 15 Hoxc9
UniSTS entry: Chr 15 PMC15172P2
UniSTS entry: Chr 15 Hoxc9
UniSTS entry: (n/a)
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK078758.1 Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030446H24 product:homeo box C9, full insert sequence P
X07647.1 Mouse mRNA for Hox 3.2 protein P
BC050838.1 Mus musculus homeo box C9, mRNA (cDNA clone MGC:59356 IMAGE:6510837), complete cds PA
X55318.1 Mus musculus Hox-3.2 gene P
NM_008272.3 Mus musculus homeo box C9 (Hoxc9), mRNA P
AK012173.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610528H19 product:HOMEOBOX PROTEIN HOX-C9 (HOX-3.2) homolog [Mus musculus], full insert sequence P

EST sequences (10 of 23) [Show all sequences]

BY420090.1 Clone I920049C18 extraembryonic tissue 3' read A
BY711359.1 Clone 2610528H19 embryonic tissue 5' read P
CD551377.1 Clone NIA:B0327D04_IMAGE:30431655 mixed 5' read
BX639275.1 Clone LIONp462H03391 uncharacterized tissue 3' read
CJ102642.1 Clone M421029E10 mixed 5' read P
CJ100524.1 Clone M421015G04 embryonic tissue 5' read P
CJ101294.1 Clone M421020L05 embryonic tissue 5' read P
CJ102739.1 Clone M421029M14 embryonic tissue 5' read P
W54619.1 Clone IMAGE:367538 embryonic tissue 5' read P
W64848.1 Clone IMAGE:386704 embryonic tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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