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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs13331491          
refSNP ID: rs13331491
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:121/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_003502.2:c.878+1805G>A
NM_181050.1:c.878+1805G>A
NT_037887.4:g.334344C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss22992710 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs13331491 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss22992710BCM_SSAHASNP|BCM_HTWD_SNPS_200403.chr16.NT_037887.3_334344fwd/BC/Tccagctacttgggaggctggggcaggagaaggcgtgaacctgggaggcggagcttgcagt03/22/0403/22/04121Genomicunknown
ss40723194ABI|hCV32106168fwd/BC/Tccagctacttgggaggctggggcaggagaaggcgtgaacctgggaggcggagcttgcagt07/17/0507/17/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs13331491|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=126
 CACaaataca aaaattagcc aggcatggta gcacacacct gtaatcccag ctactcggga
 ggcaggagaa tcacttaaac ccaggaggca gaagttgcag tgagccgaga tagcgagata
 gtgctactgc actccagcct gtgtgacaga gcgagactcc atttcaaaaa aaaaaaaaag
 aaagaaagaa agaaaCTCTC AGTTTATACC AGGCTTACTC AACAGGATAA CTTTGCGGCA
 TATTGTGTCC TAAAATGCTT GCTAAATAAA TACCACTTGG CTAAAGACAA TGAACAAAAG
 GGAAAAAAgg ccgggcgtgg tggcccacgt ctgtaatccc cgcactttgg gagactgagg
 caggcgatca cgaggtcagg agatcgagac catcctggct aacatggtga aacccagtct
 ctactaaaaa tacaaaaaat tggccggcat ggtggcgggc gcctgtagtc ccagctactt
 gggaggctgg ggcaggagaa
 Y
 ggcgtgaacc tgggaggcgg agcttgcagt gagccgagat ggcgccaccg cactccagcc
 tgggcgatag agcaagactc catctcaaaa aaaaaaaaaa aaTTAACCAA TTAACCTACA
 CAATCCtttt ttgttttttt tttgtttttt ttctgagaca gagtttcact cttgtcctct
 tgtcgcccag gctggagtgc aatggcacaa ccaaggctca ctgcaacctc tgcctcccag
 gttcaagcga ttctcctgct tcagcctccc gaggagctgg gattacaggc atgcgccaac
 tcgcctatct aatttttgta tttttagtag aaatgaggat tcaccacgtt ggccaggatg
 gtctcgaact cccgacctca ggtgattcgc ccgcctcggc ctcccaaagt gctgggatta
 caggtgtgag tcactgcgcc cagtcGACAG TCCATCTTAA ATCGTATCAC TTAGACTACA
 AGTTTAACCT TAGACATGTT

  GeneView back to top
GeneView via analysis of contig annotation: AXIN1 axin 1
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_037887->NM_003502
function
referenceNT_037887->NM_181050
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_037887->NM_003502->NP_003493334344reverseintron
referenceNT_037887->NM_181050->NP_851393334344reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs13331491 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838339.22311394312623minusAalt_assembly_8HuRefHuRefview500
16NT_037887.4334344334344plusCref_assemblyreferencereferenceview500
16NW_926018.1309950594300plusCalt_assembly_1CeleraCeleraview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_037887
dbSNP Blast Analysis
GenBank HTGS Finished:
Z81450.1 Z98272.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .