Reference SNP(refSNP) Cluster Report: rs1784804

Reference SNP(refSNP) Cluster Report: rs1784804

refSNP ID: rs1784804
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	89/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	G/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_005433.3:c.-8-19329T>G
NT_010859.14:g.766164A>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss2649461 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1784804 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss2649461	SC_JCM\|AP000931.3_56301		fwd/B	G/T	agtataccaagtattgatgatgtaaagcaa	ggtaattctcatgcttgctggtgagagtat	11/03/00	10/10/03	89	Genomic			unknown

Fasta sequence (Legend)

 AGattggcca ggcgtggtgg catgagcctg taatcccagc tacatgggag gctgaggcac
 gagaatcact tgaaccccag aggcagaggt tgcagtgagc caagattgca tcactgcact
 ccagcctggg cgacagaggg agactccatc tcaaaaaaaa aaaaaGATCG AGTataccaa
 gtattgatga tgtaaagcaa
 K
 ggtaattctc atgcttgctg gtgagagtat aaactgctat agctactctg gaaaactgtt
 tagcagtgca aacactttga cccagcaatc tattgcaagg ttacatccag tagaatatgc
 atacatgcgt accaaggagg gctcgggaat gttcattgct gtcattattc taatagcaaa
 aaaactggaa acaattcaTA

GeneView

GeneView via analysis of contig annotation: YES1 v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_010859->NM_005433

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_010859->NM_005433->NP_005424	766164	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs1784804 maps exactly once on NCBI human chromosome 18

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
18	NW_926940.1	650567	650567	minus	A	alt_assembly_1	Celera	Celera	view	200
18	NW_001838461.1	724660	736300	minus	A	alt_assembly_8	HuRef	HuRef	view	200
18	NT_010859.14	766164	766164	minus	A	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
AP000931 AP001020

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AP001020.4	AP000931.3 AP001097.3

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .