Reference SNP(refSNP) Cluster Report: rs218041

Reference SNP(refSNP) Cluster Report: rs218041

refSNP ID: rs218041
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	79/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss1967207 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs218041 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss283808	KWOK\|OVLP-000621-234296	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	06/30/00	10/10/03	79	Genomic	97 %
ss1032095	KWOK\|OVLP-000804-426200	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	09/02/00	10/10/03	86	Genomic	97 %
ss1967207	KWOK\|OVLP-000925-724660	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	10/06/00	04/07/04	89	Genomic	97 %
ss2432750	SC_JCM\|AC034214.4_93338	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	11/03/00	10/10/03	89	Genomic	unknown
ss6478110	WI_SSAHASNP\|NT_006576.11_5815074	rev/B	C/T	gaagaaagagtaccattttttgttggatag	tctctgtctgtgccacaaacaccttgtgcg	02/12/03	10/10/03	111	Genomic	unknown
ss17096247	CSHL-HAPMAP\|CSHL-HuAA-200402.chr5.NT_023089.13_9557779	rev/B	C/T	gaagaaagagtaccattttttgttggatag	tctctgtctgtgccacaaacaccttgtgcg	02/17/04	03/04/04	120	Genomic	unknown
ss22357928	SSAHASNP\|WGSA-200403-chr5.chr5.NT_023089.13_9557779	rev/B	C/T	gaagaaagagtaccattttttgttggatag	tctctgtctgtgccacaaacaccttgtgcg	03/21/04	03/21/04	121	Genomic	unknown
ss44639400	ABI\|hCV2547853	rev/B	C/T	gaagaaagagtaccattttttgttggatag	tctctgtctgtgccacaaacaccttgtgcg	07/19/05	07/19/05	126	Genomic	unknown
ss66643799	ILLUMINA\|HumanHap300v1.1_rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	11/09/06	11/09/06	127	Genomic	unknown
ss67231213	ILLUMINA\|HumanHap550v1.1_rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	11/14/06	11/14/06	127	Genomic	unknown
ss67626756	ILLUMINA\|HumanHap650Yv1.0_rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	11/14/06	11/14/06	127	Genomic	unknown
ss70709532	ILLUMINA\|HumanHap550v3.0__rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	04/20/07	03/30/08	130	Genomic	unknown
ss71276665	ILLUMINA\|HumanHap650Yv3.0_rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	04/23/07	04/23/07	127	Genomic	unknown
ss75493030	ILLUMINA\|ILMN_Human_1M_rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	08/28/07	08/29/07	129	Genomic	unknown
ss76453138	AFFY\|AFFY_6_1M_SNP_A-8314122	fwd/T	A/G	gtggcacagacagaga	ctatccaacaaaaaat	08/28/07	08/30/07	130	Genomic	unknown
ss79118688	ILLUMINA\|HumanHap300v2.0_rs218041	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	04/18/07	11/18/07	130	Genomic	unknown
ss81315189	HGSV\|Cor18507_SNV_20070510.chr5_9628041	rev/B	C/T	gaagaaagagtaccattttttgttggatag	tctctgtctgtgccacaaacaccttgtgcg	11/26/07	11/29/07	130	Genomic	unknown
ss82133454	HGSV\|Cor18555_SNV_20070510.chr5_9628041	rev/B	C/T	gaagaaagagtaccattttttgttggatag	tctctgtctgtgccacaaacaccttgtgcg	11/27/07	12/02/07	130	Genomic	unknown
ss83390141	KRIBB_YJKIM\|KHS450185	fwd/T	A/G	cgcacaaggtgtttgtggcacagacagaga	ctatccaacaaaaaatggtactctttcttc	12/04/07	12/04/07	130	Genomic	unknown

Fasta sequence (Legend)

 ATGCTTTGAG AACTAGAATA CAAATTGTTT GTACAGAAAG ATGGAAGCAG AATGTTAGTC
 ATCCAGTGAT GTATGTAAAA GTTACCCCTT GAATTTTGAA ATAGAATTGA CATAACATTG
 ACATAAAAAG AAGTCCTGTG TTTTAAAATA TACGAGCAAA AACTTATTAT CGCACAAGGT
 GTTTGTGGCA CAGACAGAGA
 R
 CTATCCAACA AAAAATGGTA CTCTTTCTTC CATAATATAG AGATGGTTTT GGTAGGTGGT
 TTCCCAACTT aggacaacat tttccacctc aactttacat ttaagtctgg ccatatccaa
 ttatcttcaa tgtgatatga gtgggagtga tatgtgtgtc acttctgagc tggggtattt
 aagaagcagA TATGCttttt tttttttttt tttttttttt ttttttGctg tctttttgtc
 cttctgctgg ttagaggaag aagactttga gggtctactg tagcacccag ggcatagtgg
 agccacaaga tggaaggctt taggatctct gagtcacgag ttaaaggaaa actgactact
 ttccaggaat ttctcactgg actcttacat gatccatgaa caacaacaac aaaaactgca
 ttatattaaa caaccaaagt gttggactta tttgttacag cagctagcat tgtcctaaTA
 AAGCAGAAGT ATAAGTTGAA AATATACAGA GAGCAGAAAC CACTCAAATA AATTAATGTA
 TGGTAGGttt atattttatt taaggaaata taaagtattt atatttaaaG AAAGCTAAGG
 CATATGTGTG CCTAAATTTT TCCTATTGAC TTTACGTACA TTCAAACATG CCTCTTTCAC
 TATCAGGGCT CTACTCAAAT ATGCTAACT

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs218041 maps exactly once on NCBI human chromosome 5

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
5	NW_001838927.1	1834806	9558708	minus	C	alt_assembly_8	HuRef	HuRef	view	200
5	NW_922518.1	8717786	9615354	minus	C	alt_assembly_1	Celera	Celera	view	200
5	NT_006576.15	9565041	9628041	minus	T	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_023089 AC003015 AC034214.4

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss1967207	HapMap-CEU	European	120	IG	0.350	0.483	0.167	1.000	0.592	0.408

	HapMap-HCB	Asian	90	IG	0.133	0.422	0.444	0.752	0.344	0.656

	HapMap-JPT	Asian	90	IG	0.222	0.422	0.356	0.273	0.433	0.567

	HapMap-YRI	Sub-Saharan African	120	IG	0.250	0.467	0.283	0.655	0.483	0.517