R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|1488267|gb|AAB05914.1| (U57412) low affinity calcium antiporter CAX2
[Arabidopsis thaliana]
Length = 399
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 399
0 150 300
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Frame = +3
Query: 390 IYKSIRVVVFSNKLNLLMPFGPLAILVQKLTGHLGWV 500
+ SI++V+F NKLNLL+PFGPLAILV + GWV
Sbjct: 22 VLNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWV 58
>gi|9294538|dbj|BAB02801.1| (AB024034) calcium/proton exchanger [Arabidopsis
thaliana]
Length = 439
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 439
0 150 300
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 22/37 (59%), Positives = 28/37 (75%), Frame = +3
Query: 390 IYKSIRVVVFSNKLNLLMPFGPLAILVQKLTGHLGWV 500
+ SI++V+F NKLNLL+PFGPLAILV + GWV
Sbjct: 64 VLNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWV 100
>gi|8778497|gb|AAF79505.1|AC002328_13 (AC002328) F20N2.13 [Arabidopsis
thaliana]
Length = 502
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 502
0 150 300 450
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.0069, P = 0.0069
Identities = 22/45 (48%), Positives = 30/45 (66%), Frame = +3
Query: 348 GESQTARHETLAGIIYKSIRVVVFSNKLNLLMPFGPLAILVQKLT 482
G + R + + +S ++V+ SNKLNLL+PFGPLAILV LT
Sbjct: 31 GSLRERRAKAPRNSVVQSFKIVILSNKLNLLLPFGPLAILVHYLT 75
>gi|8778496|gb|AAF79504.1|AC002328_12 (AC002328) F20N2.14 [Arabidopsis
thaliana]
Length = 1170
Frame 3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | | 1170
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.011, P = 0.011
Identities = 23/50 (46%), Positives = 33/50 (66%), Frame = +3
Query: 333 RGSHSGESQTARHETLAGIIYKSIRVVVFSNKLNLLMPFGPLAILVQKLT 482
+GS S + +T + +S ++V+ SNKLNLL+PFGPLAIL+ LT
Sbjct: 722 QGSLSASFRECSTKTPNNSVLQSFKIVILSNKLNLLLPFGPLAILLHYLT 771
>gi|4512263|dbj|BAA75232.1| (AB018526) H+/Ca2+ exchanger 2 [Ipomoea nil]
Length = 435
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 435
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.019, P = 0.019
Identities = 27/82 (32%), Positives = 42/82 (51%), Frame = +3
Query: 270 DEVPFDSEINFHLSESILVDVRGSHSGESQ----TARHETLAGI-IYKSIRVVVFSNKLN 434
DEVP S E++ + +H + T + I + +SI +V+ K+N
Sbjct: 13 DEVPLSSSHGASKMETLHYEAPHNHIASPRAFVSTRLLRKMRQISVLRSIYIVLIKAKIN 72
Query: 435 LLMPFGPLAILVQKLTGHLGWV 500
+L+PFGPLAIL+ +TG WV
Sbjct: 73 VLLPFGPLAILLHHVTGKHAWV 94
>gi|5456729|gb|AAD43632.1|AF080138_1 (AF080138) envelope glycoprotein; gp120
[Human immunodeficiency virus type 1]
Length = 70
Frame 3 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.1, P = 0.66
Identities = 14/33 (42%), Positives = 20/33 (60%), Frame = +3
Query: 300 FHLSESILVDVRGSHSGESQTARHETLAGIIYK 398
FH + I+ D+R +H S+TA H TL I+ K
Sbjct: 32 FHATGEIIGDIRQAHCNLSKTAWHNTLKKIVIK 64
>gi|2133407|pir||S66462 lysozyme (EC 3.2.1.17) - Entamoeba histolytica
(fragments)
Length = 77
Frame -1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.8, P = 0.84
Identities = 22/78 (28%), Positives = 39/78 (50%), Frame = -1
Query: 241 GVPILQVSDKSSKNPDATRVGFTSTEVSIFFITQMGIKKPNCPQN-NYYGGNYFGFVWEE 65
G+ + Q + SS + GFT T V + G N PQ YY GN FG +++
Sbjct: 3 GIDVSQPTSTSSFTXLRNK-GFT-TMVIVRAWKSTGSFDTNAPQTLKYYWGNLFGSSYKQ 60
Query: 64 FKSERENMCFFGFVEFQFQ 8
++ + ++C G V++ ++
Sbjct: 61 YRGD-VSVCSAG-VDYNYK 77
>gi|10640395|emb|CAC12209.1| (AL445066) ATP-dependent proteinase La (Lon)
related protein [Thermoplasma acidophilum]
Length = 657
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 657
0 150 300 450 600
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 2.9, P = 0.95
Identities = 27/69 (39%), Positives = 40/69 (57%), Frame = +3
Query: 267 DDEVPFDSEINFHLSESILVDVRGS--HSGESQTARHETL-AGIIYKSIRVVVFSNKLNL 437
+D+ PF H S ++L DVR SG +T HE + AG I+K+ + V+F +++NL
Sbjct: 187 NDKPPFVDSTGAH-SGALLGDVRHDPFQSGGLETPAHERVEAGNIHKAHKGVLFIDEINL 245
Query: 438 LMPFGPLAIL 467
L P AIL
Sbjct: 246 LRPEDQQAIL 255
>gi|987433|gb|AAC56884.1| (U30028) envelope glycoprotein V3 region [Human
immunodeficiency virus type 1]
Length = 83
Frame 3 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 4.0, P = 0.98
Identities = 17/43 (39%), Positives = 26/43 (60%), Frame = +3
Query: 300 FHLSESILVDVRGSHSGESQTARHETLAGIIYKSIRVVVFSNK 428
F+ + I+ D+R +H S+TA + TLA I+ K +R F NK
Sbjct: 39 FYATGEIIGDIRQAHCNLSRTAWNNTLAQIV-KKLREQ-FKNK 79
>gi|6007193|gb|AAF00801.1| (AF174786) envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 77
Frame 3 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 6.8, P = 1.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Frame = +3
Query: 183 TRVASGFLDDLSETCKMGT--PNGRAMCKSDDEVPFDSEINFHLSESILVDVRGSHSGES 356
T A + L+ET ++ PN KS +P F+ + I+ D+R +H S
Sbjct: 4 TNNAKNIIVQLNETVEINCTRPNNNTR-KS---IPMGPGKAFYATGDIIGDIRQAHCNIS 59
Query: 357 QTARHETLAGIIYK 398
+T ++TL I+ K
Sbjct: 60 RTXWNKTLKQIVIK 73
>gi|987441|gb|AAC56888.1| (U30032) envelope glycoprotein V3 region [Human
immunodeficiency virus type 1]
Length = 77
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 8.8, P = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Frame = +3
Query: 300 FHLSESILVDVRGSHSGESQTARHETLAGIIYK 398
F+ + I+ D+R +H S+TA + TLA I+ K
Sbjct: 39 FYATGEIIGDIRQAHCNLSETAWNNTLAQIVEK 71
>gi|6007190|gb|AAF00798.1| (AF174783) envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 76
Frame 3 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 8.8, P = 1.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Frame = +3
Query: 183 TRVASGFLDDLSETCKMGT--PNGRAMCKSDDEVPFDSEINFHLSESILVDVRGSHSGES 356
T A + L+ET ++ PN KS +P F+ + I+ D+R +H S
Sbjct: 3 TNNAKNIIVQLNETVEINCTRPNNNTR-KS---IPMGPGKAFYATGDIIGDIRQAHCNIS 58
Query: 357 QTARHETLAGIIYK 398
+T ++TL I+ K
Sbjct: 59 RTKWNKTLKQIVIK 72
>gi|6007198|gb|AAF00806.1| (AF174791) envelope glycoprotein [Human
immunodeficiency virus type 1] >gi|6007200|gb|AAF00808.1|
(AF174793) envelope glycoprotein [Human immunodeficiency virus type
1]
Length = 81
Frame 3 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 8.8, P = 1.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Frame = +3
Query: 183 TRVASGFLDDLSETCKMGT--PNGRAMCKSDDEVPFDSEINFHLSESILVDVRGSHSGES 356
T A + L+ET ++ PN KS +P F+ + I+ D+R +H S
Sbjct: 8 TNNAKNIIVQLNETVEINCTRPNNNTR-KS---IPMGPGKAFYATGDIIGDIRQAHCNIS 63
Query: 357 QTARHETLAGIIYK 398
+T ++TL I+ K
Sbjct: 64 RTKWNKTLKQIVIK 77
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.148 0.479
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.156 0.588
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.154 0.565
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.333 0.145 0.465
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.150 0.484
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.363 0.158 0.578
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 171 171 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
+1 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 171 171 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 13
No. of states in DFA: 590 (58 KB)
Total size of DFA: 211 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 174.35u 1.05s 175.40t Elapsed: 00:00:30
Total cpu time: 174.39u 1.06s 175.45t Elapsed: 00:00:30
Start: Sat Feb 2 03:30:59 2002 End: Sat Feb 2 03:31:29 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000