Reference SNP(refSNP) Cluster Report: rs10278045

Reference SNP(refSNP) Cluster Report: rs10278045

refSNP ID: rs10278045
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	119/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names
NM_018842.3:c.956-206T>G
NT_007933.14:g.23171690A>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss14147883 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10278045 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss14147883	WUGSC_SSAHASNP\|chr7.NT_007933.13_23170998		fwd/T	A/C	tgttgagaaacagaggcagcgtgcagcctg	aggcatgcaccgtgcagaagaggatccctg	11/05/03	11/22/03	119	Genomic			unknown

Fasta sequence (Legend)

 GGAGGGAGTG TAGCAGTAAT GGCTTTTCAA AGCATGAGAA TCAATAGGCA CATTCCAATG
 AGCAAACCCC AGGAATCCAC CTGTTCTCAT CTTGCCAACA ATGCTCCTTC CACGGAAACT
 GACCCTGTCC TATTTCCTCG CTTTGATCAT TGCCCAGAAG GAACAGGGAC TGTTGAGAAA
 CAGAGGCAGC GTGCAGCCTG
 M
 AGGCATGCAC CGTGCAGAAG AGGATCCCTG CGGCTGCGGG CTCTTTTCCA GGCCCAAGGA
 CAAGGCGGTG TGTGCCGGGT TGATCTGCAC TGCTTTAGCC AGGATGGCTC TTCTTAGAGA
 GACAAACCGC TCCAACGCCA AACTGCCCTC GCAATTCCAA TCGCAAAGGC AGGCTAGGGC
 CACAGTTCAA ACCCAACTGC

GeneView

GeneView via analysis of contig annotation: BAIAP2L1 BAI1-associated protein 2-like 1

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_007933->NM_018842

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_007933->NM_018842->NP_061330	23171690	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10278045 maps exactly once on NCBI human chromosome 7

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
7	NW_001839064.2	914910	92537800	minus	T	alt_assembly_8	HuRef	HuRef	view	200
7	NW_923574.1	21170352	92631315	plus	A	alt_assembly_1	Celera	Celera	view	200
7	NT_079595.2	23163492	97262280	plus	A	alt_assembly_2	CRA_TCAGchr7v2	CRA_TCAGchr7v2	view	200
7	NT_007933.14	23171690	97775350	plus	A	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_007933

dbSNP Blast Analysis
GenBank mRNA:
AK054626.1

UniGene Cluster ID
489237

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .