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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7198461          
refSNP ID: rs7198461
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_017869.3:c.362+9848G>C
NM_079837.2:c.362+9848G>C
NT_010498.15:g.41641912G>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10830640 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7198461 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss10830640BCM_SSAHASNP|chr16.NT_019609.11_2473186fwd/BC/Gggtgttggagaccaggatgcggagcgcggcgtgtgctgcggtgcactgtgtcctctgaac06/30/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7198461|allelePos=1173|totalLen=1373|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=116
 GGGTCCACAG GATGCTCTGC TGCCAGGCCT CCCTGGGCTC CTCTGATCCA TGACCGTTTC
 TCACACTTCC TTGTTTTTGG CGACTTTTTG AGGAGCATTG GGTCGGTTAT TTTGtaggat
 gtgcctctgt tggaatttgt ctcctgacta gatgggggtc acgggttttg gggagggagg
 acacgtaggt gaagtccttc tcatcgcatt ctgtccaggc cagcactgtc agcaggactc
 agtgcttaat gctgatgcgg gtcacctggc tgaggtggct cttcagcatt ttccacagtc
 aagtgactct ttcagctttc atcctgcact tgggaaggaa gctgctatgc ccatcaccca
 gttaaggagt ggggagttgt gtgccgcctc ctcgagggtg gagtgtcaca gatactgttg
 tcagtctacc cgggagcctt gtctcttctt tcccatttat tcacctattc actcatccgt
 ttccatcagt gtgtgctcat ggagatgtat tttacactct gggttagaat ctagttctgc
 ttcattctgg tgctcacatc cttccggctt tggccattgg cagctcgtca gttggctccc
 gtgccccttg acattccctc cattccctct tcattgtagg tgtttcatca ttagtggttt
 ttttttttcc ctttttttct tttgagacag agttttgttc ttgttgccca ggctggagtg
 cagtggggcg atctcttact gtaacctccg cctcctgggt tcaagcaatt cttctacctc
 aacctcccaa gtagctggaa ttacaggccg tgccaccaca cccggctgct aattttttgt
 atttatatta cagacggggt ttcaccatgt tgaccaggct ggtctcgaac tcctgacctc
 aggtgatccg cctgccttgg cctcccaaag tgctgggatt acagatgtga accaccatgc
 ccggcctgag cactttttac ttgcacagca ctaccaaatg cttctccggg ctcattgtga
 gtgcttgtcc cagcctagaa tgagccgttt ctccgtgaat tgaaagatga cgttagagac
 caggatGCGG TGTTTGGAGG GCCCTGGCGT TAGAGACCAG GATGCGGTGT TTGGAGGGCC
 CTGGTGTTGG AGACCAGGAT GCGGAGCGCG GC
 S
 GTGTGCTGCG GTGCACTGTG TCCTCTGAAC ATGCGAAGGG CCCTGGGCGG CTTTTCAGCC
 AAACATGTTG CCTAGGAGCC CCGCATCCTG TGCCGTTGCA GAGTGCTGAC TTCTGTGGAG
 TCAGTCCTGA CGCTGCTTCC CTCTCTCACT AGTAGTCATT TGTGTAGCTT CTAGGAAAGA
 AGAAGAAAAC ATACCCGTCC

  GeneView back to top
GeneView via analysis of contig annotation: BANP BTG3 associated nuclear protein
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010498->NM_017869
function
referenceNT_010498->NM_079837
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010498->NM_017869->NP_06033941641912forwardintron
referenceNT_010498->NM_079837->NP_52457641641912forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7198461 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_926251.1191572..19163827478471..27478537minusCGTGCACCGCATCCTGGTCTCTTAACACCAGGGCCCTCCAAACACCGCATCCTGGTCTCTAACACCAalt_assembly_1CeleraCeleraview1161..1179
16NW_001838330.148923773767329plusGalt_assembly_8HuRefHuRefview1172
16NT_010498.154164191286585214plusGref_assemblyreferencereferenceview1172

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_019609
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .