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GEO accession:
Sample GSM117170
Query DataSets for GSM117170
Status
Public on Sep 30, 2006
Title
NA19160_Nsp_COMM
Sample type
genomic
Source Name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism(s)
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA19160
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19160
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
11.972
0.184471
0.000000
SNP_A-1780618
AB
0.007813
10.593
0.440631
0.456989
SNP_A-1780632
AB
0.132813
4.643
0.825163
0.422819
SNP_A-1780654
AA
0.007813
14.084
0.975348
0.881793
SNP_A-4192495
BB
0.007813
16.564
0.000000
0.000000
SNP_A-4192498
BB
0.000488
13.588
0.000000
0.000000
SNP_A-1780732
BB
0.015625
14.529
0.000000
0.064865
SNP_A-1780848
BB
0.250000
3.086
0.000000
0.284144
SNP_A-1780985
BB
0.007813
9.836
0.018590
0.000000
SNP_A-1781022
AA
0.046875
9.319
0.978792
0.822961
SNP_A-1781076
AB
0.007813
6.667
0.649333
0.500000
SNP_A-1781249
BB
0.007813
18.810
0.000000
0.000000
SNP_A-1781276
BB
0.023438
9.662
0.000000
0.000000
SNP_A-1781302
BB
0.007813
6.532
0.168910
0.038486
SNP_A-1781510
AA
0.007813
28.488
0.974611
1.000000
SNP_A-4192564
BB
0.015625
8.002
0.033152
0.008902
SNP_A-1781614
AB
0.007813
10.072
0.485681
0.540000
SNP_A-1781633
AA
0.007813
20.302
1.000000
1.000000
SNP_A-1781764
AA
0.007813
11.034
0.978652
0.801370
SNP_A-1781829
AA
0.007813
10.000
0.975136
0.836892
Total number of rows:
262264
Table truncated, full table size
12938 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117170.CEL.gz
43.7 Mb
(ftp)
(http)
CEL
GSM117170.raw.txt.gz
13.1 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
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