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ImagePlus |
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package ij;
import java.awt.*;
import java.awt.image.*;
import java.net.URL;
import java.util.*;
import ij.process.*;
import ij.io.*;
import ij.gui.*;
import ij.measure.*;
import ij.plugin.filter.Analyzer;
import ij.util.Tools;
import ij.macro.Interpreter;
import ij.plugin.frame.ContrastAdjuster;
import ij.plugin.Converter;
/**
This is an extended image class that supports 8-bit, 16-bit,
32-bit (real) and RGB images. It also provides support for
3D image stacks.
@see ij.process.ImageProcessor
@see ij.ImageStack
@see ij.gui.ImageWindow
@see ij.gui.ImageCanvas
*/
public class ImagePlus implements ImageObserver, Measurements {
/** 8-bit grayscale (unsigned)*/
public static final int GRAY8 = 0;
/** 16-bit grayscale (unsigned) */
public static final int GRAY16 = 1;
/** 32-bit floating-point grayscale */
public static final int GRAY32 = 2;
/** 8-bit indexed color */
public static final int COLOR_256 = 3;
/** 32-bit RGB color */
public static final int COLOR_RGB = 4;
/** True if any changes have been made to this image. */
public boolean changes;
/** Obsolete. Use GetCalibration(). */
public double pixelWidth=1.0, pixelHeight=1.0;
/** Obsolete. Use GetCalibration(). */
public String unit="pixel";
/** Obsolete. Use GetCalibration(). */
public String units=unit;
/** Obsolete. Use GetCalibration(). */
public boolean sCalibrated;
protected Image img;
protected ImageProcessor ip;
protected ImageWindow win;
protected Roi roi;
protected int currentSlice;
protected static final int OPENED=0, CLOSED=1, UPDATED=2;
protected boolean compositeImage;
protected int width;
protected int height;
protected boolean locked = false;
private ImageJ ij = IJ.getInstance();
private String title;
private String url;
private FileInfo fileInfo;
private int nSlices = 1;
private int nChannels = 1;
private int nFrames = 1;
private int imageType = GRAY8;
private ImageStack stack;
private static int currentID = -1;
private int ID;
private static Component comp;
private boolean imageLoaded;
private int imageUpdateY, imageUpdateW;
private Properties properties;
private long startTime;
private Calibration calibration;
private static Calibration globalCalibration;
private boolean activated;
private boolean ignoreFlush;
private boolean errorLoadingImage;
private static ImagePlus clipboard;
private static Vector listeners = new Vector();
private boolean openAsHyperStack;
private int[] position = {1,1,1};
private boolean noUpdateMode;
/** Constructs an uninitialized ImagePlus. */
public ImagePlus() {
ID = --currentID;
title="null";
}
/** Constructs an ImagePlus from an Image or BufferedImage. The first
argument will be used as the title of the window that displays the image.
Throws an IllegalStateException if an error occurs while loading the image. */
public ImagePlus(String title, Image img) {
this.title = title;
ID = --currentID;
if (img!=null)
setImage(img);
}
/** Constructs an ImagePlus from an ImageProcessor. */
public ImagePlus(String title, ImageProcessor ip) {
setProcessor(title, ip);
ID = --currentID;
}
/** Constructs an ImagePlus from a TIFF, BMP, DICOM, FITS,
PGM, GIF or JPRG specified by a path or from a TIFF, DICOM,
GIF or JPEG specified by a URL. */
public ImagePlus(String pathOrURL) {
Opener opener = new Opener();
ImagePlus imp = null;
boolean isURL = pathOrURL.indexOf("://")>0;
if (isURL)
imp = opener.openURL(pathOrURL);
else
imp = opener.openImage(pathOrURL);
if (imp!=null) {
if (imp.getStackSize()>1)
setStack(imp.getTitle(), imp.getStack());
else
setProcessor(imp.getTitle(), imp.getProcessor());
setCalibration(imp.getCalibration());
properties = imp.getProperties();
setFileInfo(imp.getOriginalFileInfo());
setDimensions(imp.getNChannels(), imp.getNSlices(), imp.getNFrames());
if (isURL)
this.url = pathOrURL;
ID = --currentID;
}
}
/** Constructs an ImagePlus from a stack. */
public ImagePlus(String title, ImageStack stack) {
setStack(title, stack);
ID = --currentID;
}
/** Locks the image so other threads can test to see if it
is in use. Returns true if the image was successfully locked.
Beeps, displays a message in the status bar, and returns
false if the image is already locked. */
public synchronized boolean lock() {
if (locked) {
IJ.beep();
IJ.showStatus("\"" + title + "\" is locked");
if (IJ.macroRunning()) {
IJ.error("Image is locked");
Macro.abort();
}
return false;
} else {
locked = true;
if (IJ.debugMode) IJ.log(title + ": lock");
return true;
}
}
/** Similar to lock, but doesn't beep and display an error
message if the attempt to lock the image fails. */
public synchronized boolean lockSilently() {
if (locked)
return false;
else {
locked = true;
if (IJ.debugMode) IJ.log(title + ": lock silently");
return true;
}
}
/** Unlocks the image. */
public synchronized void unlock() {
locked = false;
if (IJ.debugMode) IJ.log(title + ": unlock");
}
private void waitForImage(Image img) {
if (comp==null) {
comp = IJ.getInstance();
if (comp==null)
comp = new Canvas();
}
imageLoaded = false;
if (!comp.prepareImage(img, this)) {
double progress;
waitStart = System.currentTimeMillis();
while (!imageLoaded && !errorLoadingImage) {
//IJ.showStatus(imageUpdateY+" "+imageUpdateW);
IJ.wait(30);
if (imageUpdateW>1) {
progress = (double)imageUpdateY/imageUpdateW;
if (!(progress<1.0)) {
progress = 1.0 - (progress-1.0);
if (progress<0.0) progress = 0.9;
}
showProgress(progress);
}
}
showProgress(1.0);
}
}
long waitStart;
private void showProgress(double percent) {
if ((System.currentTimeMillis()-waitStart)>500L)
IJ.showProgress(percent);
}
/** Draws the image. If there is an ROI, its
outline is also displayed. Does nothing if there
is no window associated with this image (i.e. show()
has not been called).*/
public void draw(){
if (win!=null)
win.getCanvas().repaint();
}
/** Draws image and roi outline using a clip rect. */
public void draw(int x, int y, int width, int height){
if (win!=null) {
ImageCanvas ic = win.getCanvas();
double mag = ic.getMagnification();
x = ic.screenX(x);
y = ic.screenY(y);
width = (int)(width*mag);
height = (int)(height*mag);
ic.repaint(x, y, width, height);
if (listeners.size()>0 && roi!=null && roi.getPasteMode()!=Roi.NOT_PASTING)
notifyListeners(UPDATED);
}
}
/** Updates this image from the pixel data in its
associated ImageProcessor, then displays it. Does
nothing if there is no window associated with
this image (i.e. show() has not been called).*/
public void updateAndDraw() {
if (ip!=null) {
if (win!=null) {
win.getCanvas().setImageUpdated();
if (listeners.size()>0) notifyListeners(UPDATED);
}
draw();
}
}
/** Updates this image from the pixel data in its
associated ImageProcessor, then displays it.
The CompositeImage class overrides this method
to only update the current channel. */
public void updateChannelAndDraw() {
updateAndDraw();
}
/** Returns a reference to the current ImageProcessor. The
CompositeImage class overrides this method so it returns
the processor associated with the current channel. */
public ImageProcessor getChannelProcessor() {
return getProcessor();
}
/** Calls draw to draw the image and also repaints the
image window to force the information displayed above
the image (dimension, type, size) to be updated. */
public void repaintWindow() {
if (win!=null) {
draw();
win.repaint();
}
}
/** Calls updateAndDraw to update from the pixel data
and draw the image, and also repaints the image
window to force the information displayed above
the image (dimension, type, size) to be updated. */
public void updateAndRepaintWindow() {
if (win!=null) {
updateAndDraw();
win.repaint();
}
}
/** ImageCanvas.paint() calls this method when the
ImageProcessor has generated new image. */
public void updateImage() {
if (ip!=null)
img = ip.createImage();
}
/** Closes the window, if any, that is displaying this image. */
public void hide() {
if (win==null) {
Interpreter.removeBatchModeImage(this);
return;
}
boolean unlocked = lockSilently();
changes = false;
win.close();
win = null;
if (unlocked)
unlock();
}
/** Closes this image and sets the pixel arrays to null. To avoid the
"Save changes?" dialog, first set the public 'changes' variable to false. */
public void close() {
ImageWindow win = getWindow();
if (win!=null) {
//if (IJ.isWindows() && IJ.isJava14())
// changes = false; // avoid 'save changes?' dialog and potential Java 1.5 deadlocks
win.close();
} else {
if (WindowManager.getCurrentImage()==this)
WindowManager.setTempCurrentImage(null);
killRoi(); //save any ROI so it can be restored later
Interpreter.removeBatchModeImage(this);
}
}
/** Opens a window to display this image and clears the status bar. */
public void show() {
show("");
}
/** Opens a window to display this image and displays
'statusMessage' in the status bar. */
public void show(String statusMessage) {
if (win!=null) return;
if ((IJ.isMacro() && ij==null) || Interpreter.isBatchMode()) {
ImagePlus img = WindowManager.getCurrentImage();
if (img!=null) img.saveRoi();
WindowManager.setTempCurrentImage(this);
Interpreter.addBatchModeImage(this);
return;
}
if (Prefs.useInvertingLut && getBitDepth()==8 && ip!=null && !ip.isInvertedLut()&& !ip.isColorLut())
invertLookupTable();
img = getImage();
if ((img!=null) && (width>=0) && (height>=0)) {
activated = false;
int stackSize = getStackSize();
//if (compositeImage) stackSize /= nChannels;
if (stackSize>1)
win = new StackWindow(this);
else
win = new ImageWindow(this);
if (roi!=null) roi.setImage(this);
draw();
IJ.showStatus(statusMessage);
if (IJ.isMacro()) { // wait for window to be activated
long start = System.currentTimeMillis();
while (!activated) {
IJ.wait(5);
if ((System.currentTimeMillis()-start)>2000) {
WindowManager.setTempCurrentImage(this);
break; // 2 second timeout
}
}
}
notifyListeners(OPENED);
}
}
void invertLookupTable() {
int nImages = getStackSize();
ip.invertLut();
if (nImages==1)
ip.invert();
else {
ImageStack stack2 = getStack();
for (int i=1; i<=nImages; i++)
stack2.getProcessor(i).invert();
stack2.setColorModel(ip.getColorModel());
}
}
/** Called by ImageWindow.windowActivated(). */
public void setActivated() {
activated = true;
}
/** Returns this image as a AWT image. */
public Image getImage() {
if (img==null && ip!=null)
img = ip.createImage();
return img;
}
/** Returns this image as a BufferedImage. */
public BufferedImage getBufferedImage() {
if (isComposite())
return (new ColorProcessor(getImage())).getBufferedImage();
else
return ip.getBufferedImage();
}
/** Returns this image's unique numeric ID. */
public int getID() {
return ID;
}
/** Replaces the image, if any, with the one specified.
Throws an IllegalStateException if an error occurs
while loading the image. */
public void setImage(Image img) {
if (img instanceof BufferedImage) {
BufferedImage bi = (BufferedImage)img;
if (bi.getType()==BufferedImage.TYPE_USHORT_GRAY) {
setProcessor(null, new ShortProcessor(bi));
return;
} else if (bi.getType()==BufferedImage.TYPE_BYTE_GRAY) {
setProcessor(null, new ByteProcessor(bi));
return;
}
}
roi = null;
errorLoadingImage = false;
waitForImage(img);
if (errorLoadingImage)
throw new IllegalStateException ("Error loading image");
this.img = img;
int newWidth = img.getWidth(ij);
int newHeight = img.getHeight(ij);
boolean dimensionsChanged = newWidth!=width || newHeight!=height;
width = newWidth;
height = newHeight;
ip = null;
stack = null;
LookUpTable lut = new LookUpTable(img);
int type;
if (lut.getMapSize() > 0) {
if (lut.isGrayscale())
type = GRAY8;
else
type = COLOR_256;
} else
type = COLOR_RGB;
setType(type);
setupProcessor();
this.img = ip.createImage();
if (win!=null) {
if (dimensionsChanged)
win = new ImageWindow(this);
else
repaintWindow();
}
}
/** Replaces the ImageProcessor, if any, with the one specified.
Set 'title' to null to leave the image title unchanged. */
public void setProcessor(String title, ImageProcessor ip) {
int stackSize = getStackSize();
if (stackSize>1 && (ip.getWidth()!=width || ip.getHeight()!=height))
throw new IllegalArgumentException("ip wrong size");
if (stackSize<=1) {
stack = null;
setCurrentSlice(1);
}
setProcessor2(title, ip, null);
}
void setProcessor2(String title, ImageProcessor ip, ImageStack newStack) {
if (title!=null) setTitle(title);
this.ip = ip;
if (ij!=null) ip.setProgressBar(ij.getProgressBar());
int stackSize = 1;
if (stack!=null) {
stackSize = stack.getSize();
if (currentSlice>stackSize) setCurrentSlice(stackSize);
}
img = null;
boolean dimensionsChanged = width>0 && height>0 && (width!=ip.getWidth() || height!=ip.getHeight());
if (dimensionsChanged) roi = null;
int type;
if (ip instanceof ByteProcessor)
type = GRAY8;
else if (ip instanceof ColorProcessor)
type = COLOR_RGB;
else if (ip instanceof ShortProcessor)
type = GRAY16;
else
type = GRAY32;
if (width==0)
imageType = type;
else
setType(type);
width = ip.getWidth();
height = ip.getHeight();
if (win!=null) {
if (dimensionsChanged && stackSize==1)
win.updateImage(this);
else if (newStack==null)
repaintWindow();
}
}
/** Replaces the stack, if any, with the one specified.
Set 'title' to null to leave the title unchanged. */
public void setStack(String title, ImageStack stack) {
int stackSize = stack.getSize();
if (stackSize==0)
throw new IllegalArgumentException("Stack is empty");
boolean stackSizeChanged = this.stack!=null && stackSize!=getStackSize();
if (currentSlice<1) setCurrentSlice(1);
boolean resetCurrentSlice = currentSlice>stackSize;
if (resetCurrentSlice) setCurrentSlice(stackSize);
ImageProcessor ip = stack.getProcessor(currentSlice);
boolean dimensionsChanged = width>0 && height>0 && (width!=ip.getWidth()||height!=ip.getHeight());
this.stack = stack;
setProcessor2(title, ip, stack);
if (win==null) return;
boolean invalidDimensions = isHyperStack() && !((StackWindow)win).validDimensions();
if (stackSize==1 && win instanceof StackWindow)
win = new ImageWindow(this, getCanvas()); // replaces this window
else if (dimensionsChanged && !stackSizeChanged)
win.updateImage(this);
else if (stackSize>1 && !(win instanceof StackWindow)) {
if (isHyperStack()) setOpenAsHyperStack(true);
win = new StackWindow(this, getCanvas()); // replaces this window
} else if (stackSize>1 && (dimensionsChanged||invalidDimensions)) {
if (isHyperStack()) setOpenAsHyperStack(true);
win = new StackWindow(this); // replaces this window
} else
repaintWindow();
if (resetCurrentSlice) setSlice(currentSlice);
}
/** Saves this image's FileInfo so it can be later
retieved using getOriginalFileInfo(). */
public void setFileInfo(FileInfo fi) {
if (fi!=null)
fi.pixels = null;
fileInfo = fi;
}
/** Returns the ImageWindow that is being used to display
this image. Returns null if show() has not be called
or the ImageWindow has been closed. */
public ImageWindow getWindow() {
return win;
}
/** Returns true if this image is currently being displayed in a window. */
public boolean isVisible() {
return win!=null && win.isVisible();
}
/** This method should only be called from an ImageWindow. */
public void setWindow(ImageWindow win) {
this.win = win;
if (roi!=null)
roi.setImage(this); // update roi's 'ic' field
}
/** Returns the ImageCanvas being used to
display this image, or null. */
public ImageCanvas getCanvas() {
return win!=null?win.getCanvas():null;
}
/** Sets current foreground color. */
public void setColor(Color c) {
if (ip!=null)
ip.setColor(c);
}
void setupProcessor() {
if (imageType==COLOR_RGB) {
if (ip == null || ip instanceof ByteProcessor) {
ip = new ColorProcessor(getImage());
if (IJ.debugMode) IJ.log(title + ": new ColorProcessor");
}
}
else if (ip==null || (ip instanceof ColorProcessor)) {
ip = new ByteProcessor(getImage());
if (IJ.debugMode) IJ.log(title + ": new ByteProcessor");
}
if (roi!=null && roi.isArea())
ip.setRoi(roi.getBounds());
else
ip.resetRoi();
}
public boolean isProcessor() {
return ip!=null;
}
/** Returns a reference to the current ImageProcessor. If there
is no ImageProcessor, it creates one. Returns null if this
ImagePlus contains no ImageProcessor and no AWT Image. */
public ImageProcessor getProcessor() {
if (ip==null && img==null)
return null;
setupProcessor();
if (!compositeImage)
ip.setLineWidth(Line.getWidth());
if (ij!=null)
ip.setProgressBar(ij.getProgressBar());
Calibration cal = getCalibration();
if (cal.calibrated())
ip.setCalibrationTable(cal.getCTable());
else
ip.setCalibrationTable(null);
return ip;
}
/** Frees RAM by setting the snapshot (undo) buffer in
the current ImageProcessor to null. */
public void trimProcessor() {
ImageProcessor ip2 = ip;
if (!locked && ip2!=null) {
if (IJ.debugMode) IJ.log(title + ": trimProcessor");
ip2.setSnapshotPixels(null);
}
}
/** Obsolete. */
public void killProcessor() {
}
/** For images with irregular ROIs, returns a byte mask, otherwise, returns
null. Mask pixels have a non-zero value. */
public ImageProcessor getMask() {
if (roi==null) {
if (ip!=null) ip.resetRoi();
return null;
}
ImageProcessor mask = roi.getMask();
if (mask==null)
return null;
if (ip!=null) {
ip.setMask(mask);
ip.setRoi(roi.getBounds());
}
return mask;
}
/** Returns an ImageStatistics object generated using the standard
measurement options (area, mean, mode, min and max). */
public ImageStatistics getStatistics() {
return getStatistics(AREA+MEAN+MODE+MIN_MAX);
}
/** Returns an ImageStatistics object generated using the
specified measurement options. */
public ImageStatistics getStatistics(int mOptions) {
return getStatistics(mOptions, 256, 0.0, 0.0);
}
/** Returns an ImageStatistics object generated using the
specified measurement options and histogram bin count.
Note: except for float images, the number of bins
is currently fixed at 256.
*/
public ImageStatistics getStatistics(int mOptions, int nBins) {
return getStatistics(mOptions, nBins, 0.0, 0.0);
}
/** Returns an ImageStatistics object generated using the
specified measurement options, histogram bin count and histogram range.
Note: for 8-bit and RGB images, the number of bins
is fixed at 256 and the histogram range is always 0-255.
*/
public ImageStatistics getStatistics(int mOptions, int nBins, double histMin, double histMax) {
setupProcessor();
if (roi!=null && roi.isArea())
ip.setRoi(roi);
else
ip.resetRoi();
ip.setHistogramSize(nBins);
Calibration cal = getCalibration();
if (getType()==GRAY16&& !(histMin==0.0&&histMax==0.0))
{histMin=cal.getRawValue(histMin); histMax=cal.getRawValue(histMax);}
ip.setHistogramRange(histMin, histMax);
ImageStatistics stats = ImageStatistics.getStatistics(ip, mOptions, cal);
ip.setHistogramSize(256);
ip.setHistogramRange(0.0, 0.0);
return stats;
}
/** Returns the image name. */
public String getTitle() {
if (title==null)
return "";
else
return title;
}
/** Returns a shortened version of image name that does not
include spaces or a file name extension. */
public String getShortTitle() {
String title = getTitle();
int index = title.indexOf(' ');
if (index>-1)
title = title.substring(0, index);
index = title.lastIndexOf('.');
if (index>0)
title = title.substring(0, index);
return title;
}
/** Sets the image name. */
public void setTitle(String title) {
if (title==null)
return;
if (win!=null) {
if (ij!=null)
Menus.updateWindowMenuItem(this.title, title);
String virtual = stack!=null && stack.isVirtual()?" (V)":"";
String global = getGlobalCalibration()!=null?" (G)":"";
String scale = "";
double magnification = win.getCanvas().getMagnification();
if (magnification!=1.0) {
double percent = magnification*100.0;
int digits = percent>100.0||percent==(int)percent?0:1;
scale = " (" + IJ.d2s(percent,digits) + "%)";
}
win.setTitle(title+virtual+global+scale);
}
this.title = title;
}
public int getWidth() {
return width;
}
public int getHeight() {
return height;
}
/** If this is a stack, returns the number of slices, else returns 1. */
public int getStackSize() {
if (stack==null)
return 1;
else {
int slices = stack.getSize();
//if (compositeImage) slices /= nChannels;
if (slices<=0) slices = 1;
return slices;
}
}
/** If this is a stack, returns the actual number of images in the stack, else returns 1. */
public int getImageStackSize() {
if (stack==null)
return 1;
else {
int slices = stack.getSize();
if (slices==0) slices = 1;
return slices;
}
}
/** Sets the 3rd, 4th and 5th dimensions, where
<code>nChannels</code>*<code>nSlices</code>*<code>nFrames</code>
must be equal to the stack size. */
public void setDimensions(int nChannels, int nSlices, int nFrames) {
//IJ.log("setDimensions: "+nChannels+" "+nSlices+" "+nFrames+" "+getImageStackSize());
if (nChannels*nSlices*nFrames!=getImageStackSize() && ip!=null) {
//throw new IllegalArgumentException("channels*slices*frames!=stackSize");
nChannels = 1;
nSlices = getImageStackSize();
nFrames = 1;
if (isHyperStack()) {
setOpenAsHyperStack(false);
new StackWindow(this);
setSlice(1);
}
}
boolean updateWin = isHyperStack() && (this.nChannels!=nChannels||this.nSlices!=nSlices||this.nFrames!=nFrames);
this.nChannels = nChannels;
this.nSlices = nSlices;
this.nFrames = nFrames;
if (updateWin) {
if (nSlices!=getImageStackSize())
setOpenAsHyperStack(true);
new StackWindow(this);
setSlice(1);
}
//IJ.log("setDimensions: "+ nChannels+" "+nSlices+" "+nFrames);
}
public boolean isHyperStack() {
return win!=null && win instanceof StackWindow && ((StackWindow)win).isHyperStack();
}
/** Returns the number of channels. */
public int getNChannels() {
verifyDimensions();
return nChannels;
}
/** Returns the image depth (number of z-slices). */
public int getNSlices() {
//IJ.log("getNSlices: "+ nChannels+" "+nSlices+" "+nFrames);
verifyDimensions();
return nSlices;
}
/** Returns the number of frames (time-points). */
public int getNFrames() {
verifyDimensions();
return nFrames;
}
/** Returns the dimensions of this image (width, height, nChannels,
nSlices, nFrames) as a 5 element int array. */
public int[] getDimensions() {
verifyDimensions();
int[] d = new int[5];
d[0] = width;
d[1] = height;
d[2] = nChannels;
d[3] = nSlices;
d[4] = nFrames;
return d;
}
void verifyDimensions() {
int stackSize = getImageStackSize();
if (nSlices==1) {
if (nChannels>1 && nFrames==1)
nChannels = stackSize;
else if (nFrames>1 && nChannels==1)
nFrames = stackSize;
}
if (nChannels*nSlices*nFrames!=stackSize) {
nSlices = stackSize;
nChannels = 1;
nFrames = 1;
}
}
/** Returns the current image type (ImagePlus.GRAY8, ImagePlus.GRAY16,
ImagePlus.GRAY32, ImagePlus.COLOR_256 or ImagePlus.COLOR_RGB).
@see #getBitDepth
*/
public int getType() {
return imageType;
}
/** Returns the bit depth, 8, 16, 24 (RGB) or 32. RGB images actually use 32 bits per pixel. */
public int getBitDepth() {
int bitDepth = 0;
switch (imageType) {
case GRAY8: case COLOR_256: bitDepth=8; break;
case GRAY16: bitDepth=16; break;
case GRAY32: bitDepth=32; break;
case COLOR_RGB: bitDepth=24; break;
}
return bitDepth;
}
/** Returns the number of bytes per pixel. */
public int getBytesPerPixel() {
switch (imageType) {
case GRAY16: return 2;
case GRAY32: case COLOR_RGB: return 4;
default: return 1;
}
}
protected void setType(int type) {
if ((type<0) || (type>COLOR_RGB))
return;
int previousType = imageType;
imageType = type;
if (imageType!=previousType) {
if (win!=null)
Menus.updateMenus();
getLocalCalibration().setImage(this);
}
}
/** Adds a key-value pair to this image's properties. The key
is removed from the properties table if value is null. */
public void setProperty(String key, Object value) {
if (properties==null)
properties = new Properties();
if (value==null)
properties.remove(key);
else
properties.put(key, value);
}
/** Returns the property associated with 'key'. May return null. */
public Object getProperty(String key) {
if (properties==null)
return null;
else
return properties.get(key);
}
/** Returns this image's Properties. May return null. */
public Properties getProperties() {
return properties;
}
/** Creates a LookUpTable object corresponding to this image. */
public LookUpTable createLut() {
return new LookUpTable(getProcessor().getColorModel());
}
/** Returns true is this image uses an inverting LUT that
displays zero as white and 255 as black. */
public boolean isInvertedLut() {
if (ip==null) {
if (img==null)
return false;
setupProcessor();
}
return ip.isInvertedLut();
}
private int[] pvalue = new int[4];
/**
Returns the pixel value at (x,y) as a 4 element array. Grayscale values
are retuned in the first element. RGB values are returned in the first
3 elements. For indexed color images, the RGB values are returned in the
first 3 three elements and the index (0-255) is returned in the last.
*/
public int[] getPixel(int x, int y) {
pvalue[0]=pvalue[1]=pvalue[2]=pvalue[3]=0;
if (img == null)
return pvalue;
switch (imageType) {
case GRAY8: case COLOR_256:
int index;
if (ip!=null)
index = ip.getPixel(x, y);
else {
byte[] pixels8;
PixelGrabber pg = new PixelGrabber(img,x,y,1,1,false);
try {pg.grabPixels();}
catch (InterruptedException e){return pvalue;};
pixels8 = (byte[])(pg.getPixels());
index = pixels8!=null?pixels8[0]&0xff:0;
}
if (imageType!=COLOR_256) {
pvalue[0] = index;
return pvalue;
}
pvalue[3] = index;
// fall through to get rgb values
case COLOR_RGB:
int[] pixels32 = new int[1];
if (win==null) break;
PixelGrabber pg = new PixelGrabber(img, x, y, 1, 1, pixels32, 0, width);
try {pg.grabPixels();}
catch (InterruptedException e){return pvalue;};
int c = pixels32[0];
int r = (c&0xff0000)>>16;
int g = (c&0xff00)>>8;
int b = c&0xff;
pvalue[0] = r;
pvalue[1] = g;
pvalue[2] = b;
break;
case GRAY16: case GRAY32:
if (ip!=null) pvalue[0] = ip.getPixel(x, y);
break;
}
return pvalue;
}
/** Returns an empty image stack that has the same
width, height and color table as this image. */
public ImageStack createEmptyStack() {
ColorModel cm;
if (ip!=null)
cm = ip.getColorModel();
else
cm = createLut().getColorModel();
return new ImageStack(width, height, cm);
}
/** Returns the image stack. The stack may have only
one slice. After adding or removing slices, call
<code>setStack()</code> to update the image and
the window that is displaying it.
@see #setStack
*/
public ImageStack getStack() {
ImageStack s;
if (stack==null) {
s = createEmptyStack();
ImageProcessor ip2 = getProcessor();
String info = (String)getProperty("Info");
String label = info!=null?getTitle()+"\n"+info:null;
s.addSlice(label, ip2);
s.update(ip2);
} else {
s = stack;
s.update(ip);
}
if (roi!=null)
s.setRoi(roi.getBounds());
return s;
}
/** Returns the base image stack. */
public ImageStack getImageStack() {
if (stack==null)
return getStack();
else {
stack.update(ip);
return stack;
}
}
/** Returns the current stack slice number or 1 if
this is a single image. */
public int getCurrentSlice() {
if (currentSlice<1) setCurrentSlice(1);
if (currentSlice>getStackSize()) setCurrentSlice(getStackSize());
return currentSlice;
}
final void setCurrentSlice(int slice) {
currentSlice = slice;
int stackSize = getStackSize();
if (nChannels==stackSize) updatePosition(currentSlice, 1, 1);
if (nSlices==stackSize) updatePosition(1, currentSlice, 1);
if (nFrames==stackSize) updatePosition(1, 1, currentSlice);
}
public int getChannel() {
return position[0];
}
public int getSlice() {
return position[1];
}
public int getFrame() {
return position[2];
}
public void killStack() {
stack = null;
trimProcessor();
}
public void setPosition(int channel, int slice, int frame) {
if (channel<1) channel = 1;
if (channel>nChannels) channel = nChannels;
if (slice<1) slice = 1;
if (slice>nSlices) slice = nSlices;
if (frame<1) frame = 1;
if (frame>nFrames) frame = nFrames;
if (isHyperStack() && !Interpreter.isBatchMode())
((StackWindow)win).setPosition(channel, slice, frame);
else {
setSlice((frame-1)*nChannels*nSlices + (slice-1)*nChannels + channel);
updatePosition(channel, slice, frame);
}
}
public void setPositionWithoutUpdate(int channel, int slice, int frame) {
noUpdateMode = true;
setPosition(channel, slice, frame);
noUpdateMode = false;
}
public int getStackIndex(int channel, int slice, int frame) {
if (channel<1) channel = 1;
if (channel>nChannels) channel = nChannels;
if (slice<1) slice = 1;
if (slice>nSlices) slice = nSlices;
if (frame<1) frame = 1;
if (frame>nFrames) frame = nFrames;
return (frame-1)*nChannels*nSlices + (slice-1)*nChannels + channel;
}
/* Hack needed to make the HyperStackReducer work. */
public void resetStack() {
if (currentSlice==1 && stack!=null && stack.getSize()>0) {
ColorModel cm = ip.getColorModel();
double min = ip.getMin();
double max = ip.getMax();
ip = stack.getProcessor(1);
ip.setColorModel(cm);
ip.setMinAndMax(min, max);
}
}
public void setPosition(int n) {
int[] dim = getDimensions();
int c = ((n-1)%dim[2])+1;
int z = (((n-1)/dim[2])%dim[3])+1;
int t = (((n-1)/(dim[2]*dim[3]))%dim[4])+1;
setPosition(c, z, t);
}
/** Activates the specified slice. The index must be >= 1
and <= N, where N in the number of slices in the stack.
Does nothing if this ImagePlus does not use a stack. */
public synchronized void setSlice(int index) {
if (stack==null || index==currentSlice) {
updateAndRepaintWindow();
return;
}
if (index>=1 && index<=stack.getSize()) {
Roi roi = getRoi();
if (roi!=null)
roi.endPaste();
if (isProcessor())
stack.setPixels(ip.getPixels(),currentSlice);
ip = getProcessor();
setCurrentSlice(index);
Object pixels = stack.getPixels(currentSlice);
if (pixels!=null) {
ip.setSnapshotPixels(null);
ip.setPixels(pixels);
}
if (win!=null && win instanceof StackWindow)
((StackWindow)win).updateSliceSelector();
if (IJ.altKeyDown() && !IJ.isMacro()) {
if (imageType==GRAY16 || imageType==GRAY32) {
ip.resetMinAndMax();
IJ.showStatus(index+": min="+ip.getMin()+", max="+ip.getMax());
}
ContrastAdjuster.update();
}
if (imageType==COLOR_RGB)
ContrastAdjuster.update();
if (!Interpreter.isBatchMode() && !noUpdateMode)
updateAndRepaintWindow();
else
img = null;
}
}
/** Obsolete */
void undoFilter() {
if (ip!=null) {
ip.reset();
updateAndDraw();
}
}
public Roi getRoi() {
return roi;
}
/** Assigns the specified ROI to this image and displays it. Any existing
ROI is deleted if <code>roi</code> is null or its width or height is zero.
Sets the ImageProcessor mask to null. */
public void setRoi(Roi newRoi) {
if (newRoi==null)
{killRoi(); return;}
if (newRoi.isVisible()) {
newRoi = (Roi)newRoi.clone();
if (newRoi==null)
{killRoi(); return;}
}
Rectangle bounds = newRoi.getBounds();
if (bounds.width==0 && bounds.height==0 && !(newRoi.getType()==Roi.POINT||newRoi.getType()==Roi.LINE))
{killRoi(); return;}
roi = newRoi;
if (ip!=null) {
ip.setMask(null);
if (roi.isArea())
ip.setRoi(bounds);
else
ip.resetRoi();
}
roi.setImage(this);
draw();
}
/** Creates a rectangular selection. */
public void setRoi(int x, int y, int width, int height) {
setRoi(new Rectangle(x, y, width, height));
}
/** Creates a rectangular selection. */
public void setRoi(Rectangle r) {
setRoi(new Roi(r.x, r.y, r.width, r.height));
}
/** Starts the process of creating a new selection, where sx and sy are the
starting screen coordinates. The selection type is determined by which tool in
the tool bar is active. The user interactively sets the selection size and shape. */
public void createNewRoi(int sx, int sy) {
killRoi();
switch (Toolbar.getToolId()) {
case Toolbar.RECTANGLE:
roi = new Roi(sx, sy, this);
break;
case Toolbar.OVAL:
roi = new OvalRoi(sx, sy, this);
break;
case Toolbar.POLYGON:
case Toolbar.POLYLINE:
case Toolbar.ANGLE:
roi = new PolygonRoi(sx, sy, this);
break;
case Toolbar.FREEROI:
case Toolbar.FREELINE:
roi = new FreehandRoi(sx, sy, this);
break;
case Toolbar.LINE:
roi = new Line(sx, sy, this);
break;
case Toolbar.TEXT:
roi = new TextRoi(sx, sy, this);
break;
case Toolbar.POINT:
roi = new PointRoi(sx, sy, this);
if (Prefs.pointAutoMeasure || (Prefs.pointAutoNextSlice&&!Prefs.pointAddToManager)) IJ.run("Measure");
if (Prefs.pointAddToManager) {
IJ.run("Add to Manager ");
ImageCanvas ic = getCanvas();
if (ic!=null && !ic.getShowAllROIs())
ic.setShowAllROIs(true);
}
if (Prefs.pointAutoNextSlice && getStackSize()>1) {
IJ.run("Next Slice [>]");
killRoi();
}
break;
}
}
/** Deletes the current region of interest. Makes a copy
of the current ROI so it can be recovered by the
Edit/Restore Selection command. */
public void killRoi() {
if (roi!=null) {
saveRoi();
roi = null;
if (ip!=null)
ip.resetRoi();
draw();
}
}
public void saveRoi() {
if (roi!=null) {
roi.endPaste();
Rectangle r = roi.getBounds();
if (r.width>0 && r.height>0) {
Roi.previousRoi = (Roi)roi.clone();
if (IJ.debugMode) IJ.log("saveRoi: "+roi);
}
}
}
public void restoreRoi() {
if (Roi.previousRoi!=null) {
Roi pRoi = Roi.previousRoi;
Rectangle r = pRoi.getBounds();
if (r.width<=width || r.height<=height || isSmaller(pRoi)) { // will it (mostly) fit in this image?
roi = (Roi)pRoi.clone();
roi.setImage(this);
if (r.x>=width || r.y>=height || (r.x+r.width)<=0 || (r.y+r.height)<=0) // does it need to be moved?
roi.setLocation((width-r.width)/2, (height-r.height)/2);
else if (r.width==width && r.height==height) // is it the same size as the image
roi.setLocation(0, 0);
draw();
}
}
}
boolean isSmaller(Roi r) {
ImageProcessor mask = r.getMask();
if (mask==null) return false;
mask.setThreshold(255, 255, ImageProcessor.NO_LUT_UPDATE);
ImageStatistics stats = ImageStatistics.getStatistics(mask, MEAN+LIMIT, null);
return stats.area<=width*height;
}
/** Implements the File/Revert command. */
public void revert() {
if (getStackSize()>1) // can't revert stacks
return;
FileInfo fi = getOriginalFileInfo();
boolean isFileInfo = fi!=null && fi.fileFormat!=FileInfo.UNKNOWN;
if (!(isFileInfo || url!=null))
return;
if (getStackSize()>1 && (fi==null||fi.fileFormat!=FileInfo.TIFF||fi.compression!=FileInfo.COMPRESSION_NONE))
return;
if (ij!=null && changes && isFileInfo && !Interpreter.isBatchMode() && !IJ.isMacro() && !IJ.altKeyDown()) {
if (!IJ.showMessageWithCancel("Revert?", "Revert to saved version of\n\""+getTitle()+"\"?"))
return;
}
Roi saveRoi = null;
if (roi!=null) {
roi.endPaste();
saveRoi = (Roi)roi.clone();
}
trimProcessor();
if (isFileInfo && !(url!=null&&(fi.directory==null||fi.directory.equals(""))))
new FileOpener(fi).revertToSaved(this);
else if (url!=null) {
IJ.showStatus("Loading: " + url);
Opener opener = new Opener();
try {
ImagePlus imp = opener.openURL(url);
if (imp!=null)
setProcessor(null, imp.getProcessor());
} catch (Exception e) {}
if (getType()==COLOR_RGB && getTitle().endsWith(".jpg"))
Opener.convertGrayJpegTo8Bits(this);
}
if (Prefs.useInvertingLut && getBitDepth()==8 && ip!=null && !ip.isInvertedLut()&& !ip.isColorLut())
invertLookupTable();
if (getProperty("FHT")!=null) {
properties.remove("FHT");
if (getTitle().startsWith("FFT of "))
setTitle(getTitle().substring(6));
}
ContrastAdjuster.update();
if (saveRoi!=null) setRoi(saveRoi);
repaintWindow();
IJ.showStatus("");
changes = false;
notifyListeners(UPDATED);
}
/** Returns a FileInfo object containing information, including the
pixel array, needed to save this image. Use getOriginalFileInfo()
to get a copy of the FileInfo object used to open the image.
@see ij.io.FileInfo
@see #getOriginalFileInfo
@see #setFileInfo
*/
public FileInfo getFileInfo() {
FileInfo fi = new FileInfo();
fi.width = width;
fi.height = height;
fi.nImages = getStackSize();
if (compositeImage)
fi.nImages = getImageStackSize();
fi.whiteIsZero = isInvertedLut();
fi.intelByteOrder = false;
setupProcessor();
if (fi.nImages==1)
fi.pixels = ip.getPixels();
else
fi.pixels = stack.getImageArray();
Calibration cal = getCalibration();
if (cal.scaled()) {
fi.pixelWidth = cal.pixelWidth;
fi.pixelHeight = cal.pixelHeight;
fi.unit = cal.getUnit();
}
if (fi.nImages>1)
fi.pixelDepth = cal.pixelDepth;
fi.frameInterval = cal.frameInterval;
if (cal.calibrated()) {
fi.calibrationFunction = cal.getFunction();
fi.coefficients = cal.getCoefficients();
fi.valueUnit = cal.getValueUnit();
}
switch (imageType) {
case GRAY8: case COLOR_256:
LookUpTable lut = createLut();
if (imageType==COLOR_256 || !lut.isGrayscale())
fi.fileType = FileInfo.COLOR8;
else
fi.fileType = FileInfo.GRAY8;
fi.lutSize = lut.getMapSize();
fi.reds = lut.getReds();
fi.greens = lut.getGreens();
fi.blues = lut.getBlues();
break;
case GRAY16:
if (compositeImage && fi.nImages==3)
fi.fileType = fi.RGB48;
else
fi.fileType = fi.GRAY16_UNSIGNED;
break;
case GRAY32:
fi.fileType = fi.GRAY32_FLOAT;
break;
case COLOR_RGB:
fi.fileType = fi.RGB;
break;
default:
}
return fi;
}
/** Returns the FileInfo object that was used to open this image.
Returns null for images created using the File/New command.
@see ij.io.FileInfo
@see #getFileInfo
*/
public FileInfo getOriginalFileInfo() {
if (fileInfo==null & url!=null) {
fileInfo = new FileInfo();
fileInfo.width = width;
fileInfo.height = height;
fileInfo.url = url;
fileInfo.directory = null;
}
return fileInfo;
}
/** Used by ImagePlus to monitor loading of images. */
public boolean imageUpdate(Image img, int flags, int x, int y, int w, int h) {
imageUpdateY = y;
imageUpdateW = w;
if ((flags & ERROR) != 0) {
errorLoadingImage = true;
return false;
}
imageLoaded = (flags & (ALLBITS|FRAMEBITS|ABORT)) != 0;
return !imageLoaded;
}
/** Sets the image arrays to null to help the garbage collector
do its job. Does nothing if the image is locked or a
setIgnoreFlush(true) call has been made. */
public synchronized void flush() {
if (locked || ignoreFlush)
return;
notifyListeners(CLOSED);
if (ip!=null) {
ip.setPixels(null);
ip = null;
}
if (roi!=null)
roi.setImage(null);
if (stack!=null) {
Object[] arrays = stack.getImageArray();
if (arrays!=null) {
for (int i=0; i<arrays.length; i++)
arrays[i] = null;
}
}
img = null;
if (stack!=null||WindowManager.getWindowCount()==0) {
if (IJ.debugMode) IJ.log("System.gc()");
System.gc();
}
}
/** Set <code>ignoreFlush true</code> to not have the pixel
data set to null when the window is closed. */
public void setIgnoreFlush(boolean ignoreFlush) {
this.ignoreFlush = ignoreFlush;
}
/** Returns a new ImagePlus with this ImagePlus' attributes
(e.g. spatial scale), but no image. */
public ImagePlus createImagePlus() {
ImagePlus imp2 = new ImagePlus();
imp2.setType(getType());
imp2.setCalibration(getCalibration());
return imp2;
}
/** Copies the calibration of the specified image to this image. */
public void copyScale(ImagePlus imp) {
if (imp!=null && globalCalibration==null)
setCalibration(imp.getCalibration());
}
/** Calls System.currentTimeMillis() to save the current
time so it can be retrieved later using getStartTime()
to calculate the elapsed time of an operation. */
public void startTiming() {
startTime = System.currentTimeMillis();
}
/** Returns the time in milliseconds when
startTiming() was last called. */
public long getStartTime() {
return startTime;
}
/** Returns this image's calibration. */
public Calibration getCalibration() {
//IJ.log("getCalibration: "+globalCalibration+" "+calibration);
if (globalCalibration!=null) {
Calibration gc = globalCalibration.copy();
gc.setImage(this);
return gc;
} else {
if (calibration==null)
calibration = new Calibration(this);
return calibration;
}
}
/** Sets this image's calibration. */
public void setCalibration(Calibration cal) {
//IJ.write("setCalibration: "+cal);
if (cal==null)
calibration = null;
else {
calibration = cal.copy();
calibration.setImage(this);
}
}
/** Sets the system-wide calibration. */
public void setGlobalCalibration(Calibration global) {
//IJ.log("setGlobalCalibration ("+getTitle()+"): "+global);
if (global==null)
globalCalibration = null;
else
globalCalibration = global.copy();
}
/** Returns the system-wide calibration, or null. */
public Calibration getGlobalCalibration() {
return globalCalibration;
}
/** Returns this image's local calibration, ignoring
the "Global" calibration flag. */
public Calibration getLocalCalibration() {
if (calibration==null)
calibration = new Calibration(this);
return calibration;
}
/** Displays the cursor coordinates and pixel value in the status bar.
Called by ImageCanvas when the mouse moves. Can be overridden by
ImagePlus subclasses.
*/
public void mouseMoved(int x, int y) {
if (ij!=null)
ij.showStatus(getLocationAsString(x,y) + getValueAsString(x,y));
savex=x; savey=y;
}
private int savex, savey;
/** Redisplays the (x,y) coordinates and pixel value (which may
have changed) in the status bar. Called by the Next Slice and
Previous Slice commands to update the z-coordinate and pixel value.
*/
public void updateStatusbarValue() {
IJ.showStatus(getLocationAsString(savex,savey) + getValueAsString(savex,savey));
}
String getFFTLocation(int x, int y, Calibration cal) {
double center = width/2.0;
double r = Math.sqrt((x-center)*(x-center) + (y-center)*(y-center));
if (r<1.0) r = 1.0;
double theta = Math.atan2(y-center, x-center);
theta = theta*180.0/Math.PI;
if (theta<0) theta = 360.0+theta;
String s = "r=";
if (cal.scaled())
s += IJ.d2s((width/r)*cal.pixelWidth,2) + " " + cal.getUnit() + "/c (" + IJ.d2s(r,0) + ")";
else
s += IJ.d2s(width/r,2) + " p/c (" + IJ.d2s(r,0) + ")";
s += ", theta= " + IJ.d2s(theta,2) + IJ.degreeSymbol;
return s;
}
/** Converts the current cursor location to a string. */
public String getLocationAsString(int x, int y) {
Calibration cal = getCalibration();
if (getProperty("FHT")!=null)
return getFFTLocation(x, height-y-1, cal);
//y = Analyzer.updateY(y, height);
if (!IJ.altKeyDown()) {
String s = " x="+d2s(cal.getX(x)) + ", y=" + d2s(cal.getY(y,height));
if (getStackSize()>1) {
int z = isHyperStack()?getSlice()-1:getCurrentSlice()-1;
s += ", z="+d2s(cal.getZ(z));
}
return s;
} else {
String s = " x="+x+", y=" + y;
if (getStackSize()>1) {
int z = isHyperStack()?getSlice()-1:getCurrentSlice()-1;
s += ", z=" + z;
}
return s;
}
}
private String d2s(double n) {
return n==(int)n?Integer.toString((int)n):IJ.d2s(n);
}
private String getValueAsString(int x, int y) {
if (win!=null && win instanceof PlotWindow)
return "";
Calibration cal = getCalibration();
int[] v = getPixel(x, y);
int type = getType();
switch (type) {
case GRAY8: case GRAY16: case COLOR_256:
if (type==COLOR_256) {
if (cal.getCValue(v[3])==v[3]) // not calibrated
return(", index=" + v[3] + ", value=" + v[0] + "," + v[1] + "," + v[2]);
else
v[0] = v[3];
}
double cValue = cal.getCValue(v[0]);
if (cValue==v[0])
return(", value=" + v[0]);
else
return(", value=" + IJ.d2s(cValue) + " ("+v[0]+")");
case GRAY32:
return(", value=" + Float.intBitsToFloat(v[0]));
case COLOR_RGB:
return(", value=" + v[0] + "," + v[1] + "," + v[2]);
default: return("");
}
}
/** Copies the contents of the current selection to the internal clipboard.
Copies the entire image if there is no selection. Also clears
the selection if <code>cut</code> is true. */
public void copy(boolean cut) {
Roi roi = getRoi();
if (roi!=null && !roi.isArea()) {
IJ.error("Cut/Copy", "The Cut and Copy commands require\n"
+"an area selection, or no selection.");
return;
}
boolean batchMode = Interpreter.isBatchMode();
String msg = (cut)?"Cut":"Copy";
if (!batchMode) IJ.showStatus(msg+ "ing...");
ImageProcessor ip = getProcessor();
ImageProcessor ip2;
Roi roi2 = null;
ip2 = ip.crop();
if (roi!=null && roi.getType()!=Roi.RECTANGLE) {
roi2 = (Roi)roi.clone();
Rectangle r = roi.getBounds();
if (r.x<0 || r.y<0 || r.x+r.width>width || r.y+r.height>height) {
roi2 = new ShapeRoi(roi2);
ShapeRoi image = new ShapeRoi(new Roi(0, 0, width, height));
roi2 = image.and((ShapeRoi)roi2);
}
}
clipboard = new ImagePlus("Clipboard", ip2);
if (roi2!=null) clipboard.setRoi(roi2);
if (cut) {
ip.snapshot();
ip.setColor(Toolbar.getBackgroundColor());
ip.fill();
if (roi!=null && roi.getType()!=Roi.RECTANGLE) {
getMask();
ip.reset(ip.getMask());
} setColor(Toolbar.getForegroundColor());
Undo.setup(Undo.FILTER, this);
updateAndDraw();
}
int bytesPerPixel = 1;
switch (clipboard.getType()) {
case ImagePlus.GRAY16: bytesPerPixel = 2; break;
case ImagePlus.GRAY32: case ImagePlus.COLOR_RGB: bytesPerPixel = 4;
}
//Roi roi3 = clipboard.getRoi();
//IJ.log("copy: "+clipboard +" "+ "roi3="+(roi3!=null?""+roi3:""));
if (!batchMode)
IJ.showStatus(msg + ": " + (clipboard.getWidth()*clipboard.getHeight()*bytesPerPixel)/1024 + "k");
}
/** Inserts the contents of the internal clipboard into the active image. If there
is a selection the same size as the image on the clipboard, the image is inserted
into that selection, otherwise the selection is inserted into the center of the image.*/
public void paste() {
if (clipboard==null) return;
int cType = clipboard.getType();
int iType = getType();
boolean sameType = false;
if ((cType==ImagePlus.GRAY8||cType==ImagePlus.COLOR_256)&&(iType==ImagePlus.GRAY8||iType==ImagePlus.COLOR_256)) sameType = true;
else if ((cType==ImagePlus.COLOR_RGB||cType==ImagePlus.GRAY8||cType==ImagePlus.COLOR_256)&&iType==ImagePlus.COLOR_RGB) sameType = true;
else if (cType==ImagePlus.GRAY16&&iType==ImagePlus.GRAY16) sameType = true;
else if (cType==ImagePlus.GRAY32&&iType==ImagePlus.GRAY32) sameType = true;
if (!sameType) {
IJ.error("Images must be the same type to paste.");
return;
}
int w = clipboard.getWidth();
int h = clipboard.getHeight();
Roi cRoi = clipboard.getRoi();
Rectangle r = null;
Roi roi = getRoi();
if (roi!=null)
r = roi.getBounds();
if (w==width && h==height && (r==null||w!=r.width||h!=r.height)) {
setRoi(0, 0, width, height);
roi = getRoi();
r = roi.getBounds();
}
if (r==null || (r!=null && (w!=r.width || h!=r.height))) {
// create a new roi centered on visible part of image
ImageCanvas ic = null;
if (win!=null)
ic = win.getCanvas();
Rectangle srcRect = ic!=null?ic.getSrcRect():new Rectangle(0,0,width, height);
int xCenter = srcRect.x + srcRect.width/2;
int yCenter = srcRect.y + srcRect.height/2;
if (cRoi!=null && cRoi.getType()!=Roi.RECTANGLE) {
cRoi.setImage(this);
cRoi.setLocation(xCenter-w/2, yCenter-h/2);
setRoi(cRoi);
} else
setRoi(xCenter-w/2, yCenter-h/2, w, h);
roi = getRoi();
}
if (IJ.isMacro()) {
//non-interactive paste
int pasteMode = Roi.getCurrentPasteMode();
boolean nonRect = roi.getType()!=Roi.RECTANGLE;
ImageProcessor ip = getProcessor();
if (nonRect) ip.snapshot();
r = roi.getBounds();
ip.copyBits(clipboard.getProcessor(), r.x, r.y, pasteMode);
if (nonRect) ip.reset(getMask());
updateAndDraw();
//killRoi();
} else if (roi!=null) {
roi.startPaste(clipboard);
Undo.setup(Undo.PASTE, this);
}
changes = true;
}
/** Returns the internal clipboard or null if the internal clipboard is empty. */
public static ImagePlus getClipboard() {
return clipboard;
}
/** Clears the internal clipboard. */
public static void resetClipboard() {
clipboard = null;
}
protected void notifyListeners(int id) {
synchronized (listeners) {
for (int i=0; i<listeners.size(); i++) {
ImageListener listener = (ImageListener)listeners.elementAt(i);
switch (id) {
case OPENED:
listener.imageOpened(this);
break;
case CLOSED:
listener.imageClosed(this);
break;
case UPDATED:
listener.imageUpdated(this);
break;
}
}
}
}
public static void addImageListener(ImageListener listener) {
listeners.addElement(listener);
}
public static void removeImageListener(ImageListener listener) {
listeners.removeElement(listener);
}
/** Returns 'true' if the image is locked. */
public boolean isLocked() {
return locked;
}
public void setOpenAsHyperStack(boolean openAsHyperStack) {
this.openAsHyperStack = openAsHyperStack;
}
public boolean getOpenAsHyperStack() {
return openAsHyperStack;
}
/** Returns true if this is a CompositeImage. */
public boolean isComposite() {
return compositeImage && getNChannels()>1 && (this instanceof CompositeImage);
}
/** Sets the display range of the current channel. With non-composite
images it is identical to ip.setMinAndMax(min, max). */
public void setDisplayRange(double min, double max) {
ip.setMinAndMax(min, max);
}
public double getDisplayRangeMin() {
return ip.getMin();
}
public double getDisplayRangeMax() {
return ip.getMax();
}
/** The Image/Adjust/Color Balance tool uses this method to adjust RGB images.
With non-RGB images it is identical to setDisplayRange(min, max). */
public void setDisplayRange(double min, double max, int channels) {
if (ip instanceof ColorProcessor)
((ColorProcessor)ip).setMinAndMax(min, max, channels);
else
ip.setMinAndMax(min, max);
}
public void resetDisplayRange() {
ip.resetMinAndMax();
}
public void updatePosition(int c, int z, int t) {
//IJ.log("updatePosition: "+c+", "+z+", "+t);
position[0] = c;
position[1] = z;
position[2] = t;
}
public Object clone() {
try {return super.clone();}
catch (CloneNotSupportedException e) {return null;}
}
public String toString() {
return "imp["+getTitle()+" "+width+"x"+height+"x"+getStackSize()+"]";
}
}
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ImagePlus |
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