WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:No Repeats Found.Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72.Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.
Query= 'D12D06_H18_07.ab1' (130 letters)
Translating both strands of query sequence in all 6 reading framesDatabase: nr 625,274 sequences; 197,782,623 total letters.Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 7 Sequences : less than 7 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 1747 403 |========================================================= 6310 1344 400 |========================================================= 3980 944 370 |==================================================== 2510 574 263 |===================================== 1580 311 159 |====================== 1000 152 54 |======= 631 98 29 |==== 398 69 16 |== 251 53 12 |= 158 41 11 |= 100 30 10 |= 63.1 20 3 |: 39.8 17 3 |: 25.1 14 1 |: 15.8 13 0 | >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 13 <<<<<<<<<<<<<<<<< 10.0 13 0 | 6.31 13 2 |: 3.98 11 0 | 2.51 11 0 | 1.58 11 1 |: 1.00 10 2 |: 0.63 8 0 | 0.40 8 1 |: 0.25 7 0 | 0.16 7 0 | 0.10 7 3 |: 0.063 4 2 |: Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gi|9979196|sp|Q9ZSW9|TCTP_HEVBRTRANSLATIONALLY CONTRO... +1 52 0.00072 3 gi|549063|sp|P35681|TCTP_ORYSATRANSLATIONALLY CONTROL... +1 50 0.00079 3 gi|9979177|sp|Q9XHL7|TCTP_TOBACTRANSLATIONALLY CONTRO... +1 53 0.053 2 gi|1174626|sp|P43349|TCTP_SOLTUTRANSLATIONALLY CONTRO... +1 52 0.054 2 gi|6714456|gb|AAF26143.1|AC011620_19(AC011620) putati... +1 51 0.068 2 gi|81857|pir||S22489IgE-dependent histamine-releasing... +1 47 0.078 2 gi|2507442|sp|P28014|TCTP_MEDSATRANSLATIONALLY CONTRO... +1 47 0.094 2 gi|6094439|sp|O03992|TCTP_FRAANTRANSLATIONALLY CONTRO... +1 50 0.27 2 gi|7407154|gb|AAF61933.1|AF230786_1(AF230786) human t... +1 53 0.49 2 gi|2507443|sp|P50906|TCTP_PEATRANSLATIONALLY CONTROLL... +1 45 0.57 2 gi|7208434|gb|AAF40198.1|AF230211_1(AF230211) transla... +1 46 0.73 2 gi|9979193|sp|Q9ZRX0|TCTP_PSEMZTRANSLATIONALLY CONTRO... +1 50 0.991 2 gi|11994618|dbj|BAB02755.1|(AB022217) translationally... +1 49 0.992 2
Use the and icons to retrieve links to Entrez:
>gi|9979196|sp|Q9ZSW9|TCTP_HEVBR TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) >gi|4193388|gb|AAD10032.1| (AF091455) translationally controlled tumor protein [Hevea brasiliensis] Length = 168 Frame 3 hits (HSPs): _____ Frame 2 hits (HSPs): __ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | 168 0 50 100 150 Plus Strand HSPs: Score = 52 (18.3 bits), Expect = 0.00073, Sum P(3) = 0.00072 Identities = 10/15 (66%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P FD Sbjct: 69 DIVDTFRLQEQPAFD 83 Score = 44 (15.5 bits), Expect = 0.00073, Sum P(3) = 0.00072 Identities = 10/16 (62%), Positives = 10/16 (62%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 RFIK TP LD QE Sbjct: 93 RFIKLLTPKLDEEKQE 108 Score = 27 (9.5 bits), Expect = 0.00073, Sum P(3) = 0.00072 Identities = 5/7 (71%), Positives = 6/7 (85%), Frame = +2 Query: 50 KXFVTFM 70 K FVT+M Sbjct: 85 KQFVTYM 91 >gi|549063|sp|P35681|TCTP_ORYSA TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) >gi|1072464|pir||A38958 IgE-dependent histamine-releasing factor homolog - rice >gi|303835|dbj|BAA02151.1| (D12626) 21kd polypeptide [Oryza sativa] Length = 168 Frame 3 hits (HSPs): _____ Frame 2 hits (HSPs): __ Frame 1 hits (HSPs): _____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | 168 0 50 100 150 __________________ Annotated Domains: BLOCKS BL01002A: Translationally controlled tum 1..23 BLOCKS BL01002B: Translationally controlled tum 45..58 BLOCKS BL01002C: Translationally controlled tum 78..108 BLOCKS BL01002D: Translationally controlled tum 138..165 DOMO DM03251: TRANSLATIONALLYCONTROLLEDTUMORP 1..167 PFAM TCTP: Translationally controlled tumor p 1..165 PRODOM PD004329: TCTP(16) Q9ZRX0(1) Q9ZSW9(1) 1..167 PROSITE TCTP_1: Translationally controlled tumor 45..61 PROSITE TCTP_2: Translationally controlled tumor 130..149 __________________ Plus Strand HSPs: Score = 50 (17.6 bits), Expect = 0.00079, Sum P(3) = 0.00079 Identities = 10/15 (66%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P FD Sbjct: 69 DIVDTFRLQEQPPFD 83 Score = 43 (15.1 bits), Expect = 0.00079, Sum P(3) = 0.00079 Identities = 9/16 (56%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 R+IKN + LDA QE Sbjct: 93 RYIKNLSAKLDAEKQE 108 Score = 30 (10.6 bits), Expect = 0.00079, Sum P(3) = 0.00079 Identities = 6/7 (85%), Positives = 6/7 (85%), Frame = +2 Query: 50 KXFVTFM 70 K FVTFM Sbjct: 85 KQFVTFM 91 >gi|9979177|sp|Q9XHL7|TCTP_TOBAC TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) >gi|5326794|gb|AAD42049.1|AF107842_1 (AF107842) putative translationally controlled tumor protein [Nicotiana tabacum] Length = 168 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _______ __________________________________________________ Database sequence: | | | | | 168 0 50 100 150 Plus Strand HSPs: Score = 53 (18.7 bits), Expect = 0.054, Sum P(2) = 0.053 Identities = 12/23 (52%), Positives = 13/23 (56%), Frame = +1 Query: 1 DIADTFTLXEXPXFDT-QAXCYL 66 DI DTF L E P FD Q Y+ Sbjct: 69 DIVDTFRLQEQPSFDKKQFVAYM 91 Score = 42 (14.8 bits), Expect = 0.054, Sum P(2) = 0.053 Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 ++IKN TP L A +E Sbjct: 93 KYIKNLTPKLGAEQEE 108 >gi|1174626|sp|P43349|TCTP_SOLTU TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) (P23) >gi|1072463|pir||A38959 IgE-dependent histamine-releasing factor homolog - potato >gi|587546|emb|CAA85519.1| (Z37160) P23 protein [Solanum tuberosum] Length = 168 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | 168 0 50 100 150 __________________ Annotated Domains: BLOCKS BL01002A: Translationally controlled tum 1..23 BLOCKS BL01002B: Translationally controlled tum 45..58 BLOCKS BL01002C: Translationally controlled tum 78..108 BLOCKS BL01002D: Translationally controlled tum 138..165 PFAM TCTP: Translationally controlled tumor p 1..165 PRODOM PD004329: TCTP(16) Q9ZRX0(1) Q9ZSW9(1) 1..167 PROSITE TCTP_1: Translationally controlled tumor 45..61 PROSITE TCTP_2: Translationally controlled tumor 130..149 __________________ Plus Strand HSPs: Score = 52 (18.3 bits), Expect = 0.055, Sum P(2) = 0.054 Identities = 10/15 (66%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P FD Sbjct: 69 DIVDTFRLQEQPAFD 83 Score = 43 (15.1 bits), Expect = 0.055, Sum P(2) = 0.054 Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 R+IK+ TP L+ QE Sbjct: 93 RYIKSLTPKLEGEAQE 108 >gi|6714456|gb|AAF26143.1|AC011620_19 (AC011620) putative translationally controlled tumor protein [Arabidopsis thaliana] Length = 156 Frame 3 hits (HSPs): ______ Frame 1 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | 156 0 50 100 150 Plus Strand HSPs: Score = 51 (18.0 bits), Expect = 0.070, Sum P(2) = 0.068 Identities = 10/15 (66%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P FD Sbjct: 56 DIIDTFRLQEQPSFD 70 Score = 42 (14.8 bits), Expect = 0.070, Sum P(2) = 0.068 Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 R+IK +P LD+ QE Sbjct: 80 RYIKQLSPKLDSENQE 95 >gi|81857|pir||S22489 IgE-dependent histamine-releasing factor homolog - alfalfa (fragment) >gi|19658|emb|CAA45349.1| (X63872) translationally controlled tumor protein [Medicago sativa] Length = 157 Frame 3 hits (HSPs): ______ Frame 1 hits (HSPs): _____ Annotated Domains: ______ _______ __________________________________________________ Database sequence: | | | | | 157 0 50 100 150 __________________ Annotated Domains: PROSITE TCTP_1: Translationally controlled tumor 35..50 PROSITE TCTP_2: Translationally controlled tumor 119..138 __________________ Plus Strand HSPs: Score = 47 (16.5 bits), Expect = 0.081, Sum P(2) = 0.078 Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI D F L E P FD Sbjct: 58 DIVDVFRLQEQPAFD 72 Score = 46 (16.2 bits), Expect = 0.081, Sum P(2) = 0.078 Identities = 10/16 (62%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 R+IK TP LDA QE Sbjct: 82 RYIKLLTPKLDAEKQE 97 >gi|2507442|sp|P28014|TCTP_MEDSA TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) >gi|7438635|pir||T09686 TCTP protein homolog - alfalfa >gi|1419685|emb|CAA67207.1| (X98618) TCTP-like protein [Medicago sativa] Length = 167 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | 167 0 50 100 150 __________________ Annotated Domains: BLOCKS BL01002A: Translationally controlled tum 1..23 BLOCKS BL01002B: Translationally controlled tum 45..58 BLOCKS BL01002C: Translationally controlled tum 77..107 BLOCKS BL01002D: Translationally controlled tum 137..164 PFAM TCTP: Translationally controlled tumor p 1..164 PRODOM PD004329: TCTP(16) Q9ZRX0(1) Q9ZSW9(1) 1..166 PROSITE TCTP_1: Translationally controlled tumor 45..60 PROSITE TCTP_2: Translationally controlled tumor 129..148 __________________ Plus Strand HSPs: Score = 47 (16.5 bits), Expect = 0.099, Sum P(2) = 0.094 Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI D F L E P FD Sbjct: 68 DIVDVFRLQEQPAFD 82 Score = 46 (16.2 bits), Expect = 0.099, Sum P(2) = 0.094 Identities = 10/16 (62%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 R+IK TP LDA QE Sbjct: 92 RYIKLLTPKLDAEKQE 107 >gi|6094439|sp|O03992|TCTP_FRAAN TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) >gi|1922278|emb|CAB06695.1| (Z86091) TCTP protein [Fragaria x ananassa] Length = 170 Frame 3 hits (HSPs): ______ Frame 1 hits (HSPs): _____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | 170 0 50 100 150 __________________ Annotated Domains: PFAM TCTP: Translationally controlled tumor p 1..167 PRODOM PD004329: TCTP(16) Q9ZRX0(1) Q9ZSW9(1) 1..169 PROSITE TCTP_1: Translationally controlled tumor 45..60 __________________ Plus Strand HSPs: Score = 50 (17.6 bits), Expect = 0.31, Sum P(2) = 0.27 Identities = 10/15 (66%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P FD Sbjct: 71 DIVDTFRLQEQPPFD 85 Score = 38 (13.4 bits), Expect = 0.31, Sum P(2) = 0.27 Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 R+IK TP L+ QE Sbjct: 95 RYIKLLTPKLEGEQQE 110 >gi|7407154|gb|AAF61933.1|AF230786_1 (AF230786) human tumor protein-like protein [Hordeum vulgare] Length = 155 Frame 3 hits (HSPs): ____ Frame 1 hits (HSPs): _________ __________________________________________________ Database sequence: | | | | | 155 0 50 100 150 Plus Strand HSPs: Score = 53 (18.7 bits), Expect = 0.67, Sum P(2) = 0.49 Identities = 12/23 (52%), Positives = 13/23 (56%), Frame = +1 Query: 1 DIADTFTLXEXPXFDT-QAXCYL 66 DI DTF L E P FD Q Y+ Sbjct: 69 DIVDTFRLQEQPAFDKKQFIAYI 91 Score = 30 (10.6 bits), Expect = 0.67, Sum P(2) = 0.49 Identities = 6/11 (54%), Positives = 8/11 (72%), Frame = +3 Query: 75 RFIKNSTPXLD 107 R+IKN T L+ Sbjct: 93 RYIKNLTAKLE 103 >gi|2507443|sp|P50906|TCTP_PEA TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) (23 KD CALLUS PROTEIN) (P23) >gi|7438634|pir||T06567 IgE-dependent histamine-releasing factor homolog - garden pea >gi|1675196|gb|AAB19090.1| (L47968) callus protein P23 [Pisum sativum] Length = 167 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _____ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | 167 0 50 100 150 __________________ Annotated Domains: DOMO DM03251: TRANSLATIONALLYCONTROLLEDTUMORP 1..186 PFAM TCTP: Translationally controlled tumor p 1..164 PRODOM PD004329: TCTP(16) Q9ZRX0(1) Q9ZSW9(1) 1..166 PROSITE TCTP_1: Translationally controlled tumor 45..60 PROSITE TCTP_2: Translationally controlled tumor 129..148 __________________ Plus Strand HSPs: Score = 45 (15.8 bits), Expect = 0.84, Sum P(2) = 0.57 Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI D F L E P FD Sbjct: 68 DIVDVFRLQEQPPFD 82 Score = 39 (13.7 bits), Expect = 0.84, Sum P(2) = 0.57 Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 ++IK TP L+A QE Sbjct: 92 KYIKLLTPKLEAEKQE 107 >gi|7208434|gb|AAF40198.1|AF230211_1 (AF230211) translationally controlled tumor protein-related protein [Cucumis melo] Length = 168 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | 168 0 50 100 150 Plus Strand HSPs: Score = 46 (16.2 bits), Expect = 1.3, Sum P(2) = 0.73 Identities = 9/15 (60%), Positives = 9/15 (60%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P D Sbjct: 69 DIVDTFRLQEQPSMD 83 Score = 36 (12.7 bits), Expect = 1.3, Sum P(2) = 0.73 Identities = 7/16 (43%), Positives = 9/16 (56%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQE 122 ++IK TP L QE Sbjct: 93 KYIKKLTPLLQGEQQE 108 >gi|9979193|sp|Q9ZRX0|TCTP_PSEMZ TRANSLATIONALLY CONTROLLED TUMOR PROTEIN HOMOLOG (TCTP) >gi|3850844|emb|CAA10048.1| (AJ012484) TCTP-like protein [Pseudotsuga menziesii] Length = 167 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | 167 0 50 100 150 Plus Strand HSPs: Score = 50 (17.6 bits), Expect = 4.7, Sum P(2) = 0.99 Identities = 10/15 (66%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P FD Sbjct: 68 DIVDTFRLQEQPPFD 82 Score = 26 (9.2 bits), Expect = 4.7, Sum P(2) = 0.99 Identities = 6/15 (40%), Positives = 7/15 (46%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQ 119 R+IKN L Q Sbjct: 92 RYIKNLATKLSEERQ 106 >gi|11994618|dbj|BAB02755.1| (AB022217) translationally controlled tumor protein-like [Arabidopsis thaliana] >gi|12004324|gb|AAG44002.1|AF215897_1 (AF215897) TCTP homolog [Arabidopsis thaliana] Length = 168 Frame 3 hits (HSPs): _____ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | 168 0 50 100 150 Plus Strand HSPs: Score = 49 (17.2 bits), Expect = 4.8, Sum P(2) = 0.99 Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +1 Query: 1 DIADTFTLXEXPXFD 45 DI DTF L E P +D Sbjct: 69 DIVDTFRLQEQPTYD 83 Score = 27 (9.5 bits), Expect = 4.8, Sum P(2) = 0.99 Identities = 6/15 (40%), Positives = 8/15 (53%), Frame = +3 Query: 75 RFIKNSTPXLDAHXQ 119 ++IK TP L Q Sbjct: 93 KYIKLLTPKLSEEDQ 107 Parameters: filter=none matrix=BLOSUM62 V=50 B=50 E=10 gi H=1 sort_by_pvalue echofilter ctxfactor=5.60 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.143 0.478 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.135 0.401 0.325 0.134 0.423 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.327 0.140 0.432 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.150 0.535 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.354 0.156 0.616 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.369 0.163 0.554 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 42 33 10. 58 3 12 22 0.12 26 24 0.014 26 +2 0 43 31 10. 58 3 12 22 0.10 26 24 0.014 26 +1 0 43 34 10. 58 3 12 22 0.089 27 24 0.011 27 -1 0 43 31 10. 58 3 12 22 0.10 26 24 0.014 26 -2 0 43 32 10. 58 3 12 22 0.11 26 24 0.014 26 -3 0 42 35 10. 58 3 12 22 0.096 27 24 0.011 27 Statistics: Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr Title: nr Release date: unknown Posted date: 4:06 PM CST Feb 28, 2001 Format: BLAST # of letters in database: 197,782,623 # of sequences in database: 625,274 # of database sequences satisfying E: 13 No. of states in DFA: 529 (52 KB) Total size of DFA: 80 KB (128 KB) Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00 No. of threads or processors used: 6 Search cpu time: 31.62u 1.27s 32.89t Elapsed: 00:00:06 Total cpu time: 31.64u 1.30s 32.94t Elapsed: 00:00:06 Start: Thu Jan 17 04:47:46 2002 End: Thu Jan 17 04:47:52 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000