BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family  begin  end (left)  ID

  252   0.0  0.0  0.0  'E08H01_P01_15.ab1'    318  345    (2) +  (A)n     Simple_repeat     1   28    (0)      

Alignments:
252  0.00  0.00  0.00  'E08H01_P01_15.ab1'  318  345  (2)  (A)n#Simple_repeat  1  28  (152)  5

  'E08H01_P01_15.    318 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 345    
                                                     
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 28

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 28), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'E08H01_P01_15.ab1'
CCGGGNAATTCGGCCATTACGGCCGGGTATTCAGTTTGCAACTGAAGCTG
CTATTACCATCCTTCGAATTGATGACATGATCAAGCTTGTCAAGGATGAA
AGTCAAAATGAGGATTAAAGTATAACTGAATCTAAGGAGGCATCTACTTC
CCAGTGCTTACAAAAGGGAGAGTTTTGCAGGTTGTGCTGGTGTGCATTTA
AAGAGGGTATCTGCATTTTATCTTCAATGCCCTTGTTCTTGGAGAAATGT
TCTAATTATTTTTCTGAAAGTGGCGTTTATTTAAATCTTAGCATTTTATA
TTCCAACAAATTTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       347 bp
GC level:         35.55 %
bases masked:        28 bp (  8.07 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           28 bp     8.07 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E08H01_P01_15.ab1'
        (347 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 4 Sequences     : less than 4 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1159 192 |================================================
   6310  967 114 |============================
   3980  853 156 |=======================================
   2510  697  94 |=======================
   1580  603 105 |==========================
   1000  498  84 |=====================
    631  414  55 |=============
    398  359 156 |=======================================
    251  203  64 |================
    158  139  27 |======
    100  112  17 |====
   63.1   95  39 |=========
   39.8   56   7 |=
   25.1   49   7 |=
   15.8   42   3 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 39  <<<<<<<<<<<<<<<<<
   10.0   39   2 |:
   6.31   37   1 |:
   3.98   36   0 |
   2.51   36   0 |
   1.58   36   0 |
   1.00   36   2 |:
   0.63   34   1 |:
   0.40   33   0 |
   0.25   33   1 |:
   0.16   32   5 |=
   0.10   27   6 |=
  0.063   21   3 |:
  0.040   18   2 |:
  0.025   16   6 |=
  0.016   10   3 |:
  0.010    7   1 |:
 0.0063    6   3 |:
 0.0040    3   0 |
 0.0025    3   0 |
 0.0016    3   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|135535|sp|P28769|TCPA_ARATHT-COMPLEX PROTEIN 1, AL... +2   129  1.8e-06   1
gi|9293959|dbj|BAB01862.1|(AP000383) chaperonin, t-co... +2   129  1.8e-06   1
gi|6969295|gb|AAF33703.1|(AF164031) t-complex polypep... +2    92  0.0013    1
gi|1353745|gb|AAB01778.1|(U43123) T-complex polypepti... +2    95  0.0049    1
gi|4973197|gb|AAD34975.1|(AF143498) t-complex polypep... +2    86  0.0057    1
gi|4973200|gb|AAD34977.1|(AF143499) t-complex polypep... +2    86  0.0057    1
gi|10567596|gb|AAG18495.1|AF226715_1(AF226715) chaper... +2    93  0.0094    1
gi|1729866|sp|P50157|TCPA_AMBMET-COMPLEX PROTEIN 1, A... +2    85  0.012     1
gi|5731213|gb|AAD48818.1|(AF164029) t-complex polypep... +2    92  0.013     1
gi|5731215|gb|AAD48819.1|(AF164030) t-complex polypep... +2    92  0.013     1
gi|5731211|gb|AAD48817.1|(AF164028) t-complex polypep... +2    92  0.016     1
gi|2501138|sp|Q94757|TCPA_SCHMAT-COMPLEX PROTEIN 1, A... +2    92  0.016     1
gi|1174616|sp|P41988|TCPA_CAEELT-COMPLEX PROTEIN 1, A... +2    92  0.017     1
gi|7507174|pir||T24508hypothetical protein T05C12.7 -... +2    92  0.017     1
gi|4973187|gb|AAD34970.1|AF143493_1(AF143493) t-compl... +2    92  0.017     1
gi|3024698|sp|O15891|TCPA_TETPYT-COMPLEX PROTEIN 1, A... +2    91  0.021     1
gi|7716854|gb|AAF68577.1|AF252794_1(AF252794) t-compl... +2    88  0.027     1
gi|7716938|gb|AAF68619.1|AF255324_1(AF255324) t-compl... +2    88  0.027     1
gi|135537|sp|P12613|TCPA_DROMET-COMPLEX PROTEIN 1, AL... +2    88  0.045     1
gi|7300868|gb|AAF56009.1|(AE003739) T-cp1 gene produc... +2    88  0.045     1
gi|1093957|prf||2105197Achaperonin t complex protein ... +2    79  0.059     1
gi|135538|sp|P17987|TCPA_HUMANT-COMPLEX PROTEIN 1, AL... +2    86  0.072     1
gi|6981642ref|NP_036802.1| T-complex 1 [Rattus norveg... +2    86  0.072     1
gi|228954|prf||1814462AT complex protein 1 [Mus muscu... +2    86  0.072     1
gi|1729865|sp|P11983|TCP2_MOUSET-COMPLEX PROTEIN 1, A... +2    86  0.072     1
gi|4973194|gb|AAD34973.1|AF143497_1(AF143497) t-compl... +2    86  0.072     1
gi|4973192|gb|AAD34972.1|AF143496_1(AF143496) t-compl... +2    86  0.073     1
gi|4973189|gb|AAD34971.1|AF143494_1(AF143494) t-compl... +2    84  0.12      1
gi|36796|emb|CAA37064.1|(X52882) t-complex polypeptid... +2    84  0.12      1
gi|7305565ref|NP_038714.1| t-complex protein 1 [Mus m... +2    84  0.12      1
gi|135536|sp|P18279|TCPA_CRIGRT-COMPLEX PROTEIN 1, AL... +2    84  0.12      1
gi|2143475|pir||A48911gene Tcp-1x protein - mouse (fr... +2    73  0.13      1
gi|11277152|pir||T43895t-complex-type molecular chape... +2    82  0.18      1
gi|1351245|sp|P48425|THSB_THEACTHERMOSOME, BETA SUBUN... +2    78  0.41      1
gi|2501144|sp|Q53546|THS_DESSYTHERMOSOME SUBUNIT (HYP... +2    77  0.49      1
gi|10567606|gb|AAG18500.1|AF226720_1(AF226720) chaper... +2    77  0.50      1
gi|6647860|sp|O57762|THS_PYRHOTHERMOSOME SUBUNIT >gi|... +2    74  0.99      1
gi|12619653|gb|AAG60488.1|AF215060_1(AF215060) conoto... +2    57  0.999     1
gi|3024740|sp|O24730|THSB_THEK1THERMOSOME, BETA SUBUN... +2    73  0.9999    1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|135535|sp|P28769|TCPA_ARATH  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|322602|pir||JN0448 t-complex
            polypeptide Tcp-1 - Arabidopsis thaliana >gi|217871|dbj|BAA01955.1|
            (D11351) t-complex polypeptide 1 homologue [Arabidopsis thaliana]
            >gi|2326265|dbj|BAA21772.1| (D11352) CCT alpha/TCP-1 [Arabidopsis
            thaliana]
            Length = 545

Frame  2 hits (HSPs):                                                  ___
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 545
                       0           150           300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    24..66
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    68..117
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    148..179
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    202..220
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    294..330
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    374..414
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    435..474
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    500..534
   DOMO                 DM00057: HEATSHOCKPROTEINGROEL           2..540
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 31..538
   PRINTS               1: TCP-1 chaperone motif I - 33..49
   PRINTS               2: TCP-1 chaperone motif II  55..73
   PRINTS               3: TCP-1 chaperone motif III 85..104
   PRINTS               4: TCP-1 chaperone motif IV  377..399
   PRINTS               5: TCP-1 chaperone motif V - 411..423
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      3..186
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      188..255
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        257..400
   PRODOM               PD209926: TCPA_ARATH                     402..428
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      430..539
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   36..48
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   57..73
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   85..93
__________________


  Plus Strand HSPs:

 Score = 129 (45.4 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             IQFATEAAITILRIDDMIKLVKDESQ E+
Sbjct:   517 IQFATEAAITILRIDDMIKLVKDESQGEE 545


 >gi|9293959|dbj|BAB01862.1|  (AP000383) chaperonin, t-complex protein alpha
            subunit [Arabidopsis thaliana]
            Length = 550

Frame  2 hits (HSPs):                                                  ___
                        __________________________________________________
Database sequence:     |             |             |            |         | 550
                       0           150           300          450

  Plus Strand HSPs:

 Score = 129 (45.4 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 27/29 (93%), Positives = 28/29 (96%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             IQFATEAAITILRIDDMIKLVKDESQ E+
Sbjct:   522 IQFATEAAITILRIDDMIKLVKDESQGEE 550


 >gi|6969295|gb|AAF33703.1|  (AF164031) t-complex polypeptide 1 [Danio rerio]
            >gi|6969297|gb|AAF33704.1| (AF164032) t-complex polypeptide 1
            [Danio rerio] >gi|6969299|gb|AAF33705.1| (AF164033) t-complex
            polypeptide 1 [Danio rerio] >gi|6969301|gb|AAF33706.1| (AF164034)
            t-complex polypeptide 1 [Danio rerio] >gi|6969303|gb|AAF33707.1|
            (AF164035) t-complex polypeptide 1 [Danio rerio]
            >gi|6969305|gb|AAF33708.1| (AF164036) t-complex polypeptide 1
            [Danio rerio] >gi|6969307|gb|AAF33709.1| (AF164037) t-complex
            polypeptide 1 [Danio rerio] >gi|6969309|gb|AAF33710.1| (AF164038)
            t-complex polypeptide 1 [Danio rerio]
            Length = 55

Frame  2 hits (HSPs):              ________________________               
                        __________________________________________________
Database sequence:     |                 |                 |              | 55
                       0                20                40

  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.0013, P = 0.0013
 Identities = 18/26 (69%), Positives = 23/26 (88%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQ 106
             ++FATEAAITILRIDD+IKL  D+ +
Sbjct:    14 LKFATEAAITILRIDDLIKLFPDQKE 39


 >gi|1353745|gb|AAB01778.1|  (U43123) T-complex polypeptide homolog [Naegleria
            fowleri]
            Length = 389

Frame  2 hits (HSPs):                                                _____
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300

  Plus Strand HSPs:

 Score = 95 (33.4 bits), Expect = 0.0049, P = 0.0049
 Identities = 21/29 (72%), Positives = 25/29 (86%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             IQFATEAAITILRIDDMI++  +E + ED
Sbjct:   357 IQFATEAAITILRIDDMIRI--NEHEQED 383


 >gi|4973197|gb|AAD34975.1|  (AF143498) t-complex polypeptide 1 [Monodelphis
            domestica]
            Length = 64

Frame  2 hits (HSPs):                  _____________________              
                        __________________________________________________
Database sequence:     |              |               |               |   | 64
                       0             20              40              60

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.0057, P = 0.0057
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:    21 LKFATEAAITILRIDDLIKL-HPESKDD 47


 >gi|4973200|gb|AAD34977.1|  (AF143499) t-complex polypeptide 1 [Macropus
            rufogriseus]
            Length = 66

Frame  2 hits (HSPs):                  ____________________               
                        __________________________________________________
Database sequence:     |              |              |              |     | 66
                       0             20             40             60

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.0057, P = 0.0057
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:    21 LKFATEAAITILRIDDLIKL-HPESKDD 47


 >gi|10567596|gb|AAG18495.1|AF226715_1  (AF226715) chaperonin subunit alpha2
            CCTalpha [Trichomonas vaginalis]
            Length = 433

Frame  2 hits (HSPs):                                                 ____
                        __________________________________________________
Database sequence:     |                 |                |               | 433
                       0               150              300

  Plus Strand HSPs:

 Score = 93 (32.7 bits), Expect = 0.0095, P = 0.0094
 Identities = 21/31 (67%), Positives = 25/31 (80%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLV--KDESQNED 115
             IQFATEAAITILRIDD+IK+   K   +NE+
Sbjct:   402 IQFATEAAITILRIDDLIKVTPEKKPDRNEE 432


 >gi|1729866|sp|P50157|TCPA_AMBME  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|2134026|pir||S52132 t-complex-type
            molecular chaperone TCP-1 - axolotl  (fragment)
            >gi|9457231|gb|AAB34658.2| (S77330) chaperonin t-complex
            protein-1-like protein [Ambystoma mexicanum]
            Length = 173

Frame  2 hits (HSPs):                                        ________     
Annotated Domains:      ____________________________________________      
                        __________________________________________________
Database sequence:     |              |             |              |      | 173
                       0             50           100            150
__________________

Annotated Domains:
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 1..153
__________________


  Plus Strand HSPs:

 Score = 85 (29.9 bits), Expect = 0.012, P = 0.012
 Identities = 17/25 (68%), Positives = 22/25 (88%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDES 103
             ++FATEAAITILRIDD+IKL  + +
Sbjct:   132 LKFATEAAITILRIDDLIKLYPESN 156


 >gi|5731213|gb|AAD48818.1|  (AF164029) t-complex polypeptide 1 [Danio rerio]
            Length = 463

Frame  2 hits (HSPs):                                                ____ 
                        __________________________________________________
Database sequence:     |                |               |               | | 463
                       0              150             300             450

  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.013, P = 0.013
 Identities = 18/26 (69%), Positives = 23/26 (88%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQ 106
             ++FATEAAITILRIDD+IKL  D+ +
Sbjct:   422 LKFATEAAITILRIDDLIKLFPDQKE 447


 >gi|5731215|gb|AAD48819.1|  (AF164030) t-complex polypeptide 1 [Danio rerio]
            Length = 463

Frame  2 hits (HSPs):                                                ____ 
                        __________________________________________________
Database sequence:     |                |               |               | | 463
                       0              150             300             450

  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.013, P = 0.013
 Identities = 18/26 (69%), Positives = 23/26 (88%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQ 106
             ++FATEAAITILRIDD+IKL  D+ +
Sbjct:   422 LKFATEAAITILRIDDLIKLFPDQKE 447


 >gi|5731211|gb|AAD48817.1|  (AF164028) t-complex polypeptide 1 [Danio rerio]
            Length = 536

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 536
                       0           150           300           450

  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.016, P = 0.016
 Identities = 18/26 (69%), Positives = 23/26 (88%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQ 106
             ++FATEAAITILRIDD+IKL  D+ +
Sbjct:   495 LKFATEAAITILRIDDLIKLFPDQKE 520


 >gi|2501138|sp|Q94757|TCPA_SCHMA  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|1314808|gb|AAA99815.1| (U55769)
            T-complex polypeptide 1 alpha subunit [Schistosoma mansoni]
            Length = 545

Frame  2 hits (HSPs):                                                 ___ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 545
                       0           150           300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    18..60
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    62..111
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    142..173
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    196..214
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    288..324
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    368..408
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    429..468
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    494..528
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 25..532
   PRINTS               1: TCP-1 chaperone motif I - 27..43
   PRINTS               2: TCP-1 chaperone motif II  49..67
   PRINTS               3: TCP-1 chaperone motif III 79..98
   PRINTS               4: TCP-1 chaperone motif IV  371..393
   PRINTS               5: TCP-1 chaperone motif V - 405..417
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      2..175
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      185..249
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        251..398
   PRODOM               PD209924: TCPA_SCHMA                     400..424
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      426..533
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   30..42
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   51..67
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   79..87
__________________


  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.017, P = 0.016
 Identities = 20/26 (76%), Positives = 24/26 (92%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQ 106
             ++FATEAAITILRIDD+IKL K+E Q
Sbjct:   511 LKFATEAAITILRIDDLIKL-KEEKQ 535


 >gi|1174616|sp|P41988|TCPA_CAEEL  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|1078838|pir||JC4083 chaperonin -
            Caenorhabditis elegans >gi|469483|gb|AAB05072.1| (U07941) CCT-1
            [Caenorhabditis elegans]
            Length = 549

Frame  2 hits (HSPs):                                                 ____
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |            |         | 549
                       0           150           300          450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    25..67
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    69..118
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    149..180
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    202..220
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    294..330
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    374..414
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    435..474
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    500..534
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 32..538
   PRINTS               1: TCP-1 chaperone motif I - 34..50
   PRINTS               2: TCP-1 chaperone motif II  56..74
   PRINTS               3: TCP-1 chaperone motif III 86..105
   PRINTS               4: TCP-1 chaperone motif IV  377..399
   PRINTS               5: TCP-1 chaperone motif V - 411..423
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      7..183
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      189..255
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        257..404
   PRODOM               PD209915: TCPA_CAEEL                     406..428
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      430..540
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   37..49
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   58..74
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   86..94
__________________


  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.017, P = 0.017
 Identities = 20/29 (68%), Positives = 23/29 (79%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             ++FATEAAITILRIDD+IKL K E    D
Sbjct:   517 LKFATEAAITILRIDDLIKLDKQEPLGGD 545


 >gi|7507174|pir||T24508  hypothetical protein T05C12.7 - Caenorhabditis elegans
            >gi|3879449|emb|CAA91308.1| (Z66500) contains similarity to Pfam
            domain: PF00118 (TCP-1/cpn60 chaperonin family), Score=572.1,
            E-value=1.1e-168, N=1~cDNA EST EMBL:M89389 comes from this
            gene~cDNA EST EMBL:M89452 comes from this gene~cDNA EST EMBL:Z14355
            comes from this gene~cDNA >
            Length = 549

Frame  2 hits (HSPs):                                                 ____
                        __________________________________________________
Database sequence:     |             |             |            |         | 549
                       0           150           300          450

  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.017, P = 0.017
 Identities = 20/29 (68%), Positives = 23/29 (79%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             ++FATEAAITILRIDD+IKL K E    D
Sbjct:   517 LKFATEAAITILRIDDLIKLDKQEPLGGD 545


 >gi|4973187|gb|AAD34970.1|AF143493_1  (AF143493) t-complex polypeptide 1 [Danio
            rerio]
            Length = 556

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450

  Plus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.017, P = 0.017
 Identities = 18/26 (69%), Positives = 23/26 (88%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQ 106
             ++FATEAAITILRIDD+IKL  D+ +
Sbjct:   515 LKFATEAAITILRIDDLIKLFPDQKE 540


 >gi|3024698|sp|O15891|TCPA_TETPY  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|2231589|gb|AAC47799.1| (U85397)
            CCTalpha chaperonin subunit [Tetrahymena pyriformis]
            Length = 547

Frame  2 hits (HSPs):                                                  ___
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 547
                       0           150           300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    21..63
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    65..114
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    145..176
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    199..217
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    291..327
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    371..411
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    432..471
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    499..533
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 28..537
   PRINTS               1: TCP-1 chaperone motif I - 30..46
   PRINTS               2: TCP-1 chaperone motif II  52..70
   PRINTS               3: TCP-1 chaperone motif III 82..101
   PRINTS               4: TCP-1 chaperone motif IV  374..396
   PRINTS               5: TCP-1 chaperone motif V - 408..420
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      10..181
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        192..397
   PRODOM               PD186464: TCPA(6) O94501(1) TCP1(1)      399..425
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      427..540
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   33..45
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   54..70
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   82..90
__________________


  Plus Strand HSPs:

 Score = 91 (32.0 bits), Expect = 0.021, P = 0.021
 Identities = 21/29 (72%), Positives = 24/29 (82%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             ++FATEAAITILRIDDMIKL     QNE+
Sbjct:   516 LRFATEAAITILRIDDMIKL---NPQNEE 541


 >gi|7716854|gb|AAF68577.1|AF252794_1  (AF252794) t-complex polypeptide 1
            [Drosophila simulans] >gi|7716856|gb|AAF68578.1|AF252795_1
            (AF252795) t-complex polypeptide 1 [Drosophila simulans]
            >gi|7716858|gb|AAF68579.1|AF252796_1 (AF252796) t-complex
            polypeptide 1 [Drosophila simulans]
            >gi|7716860|gb|AAF68580.1|AF252797_1 (AF252797) t-complex
            polypeptide 1 [Drosophila simulans]
            >gi|7716862|gb|AAF68581.1|AF252798_1 (AF252798) t-complex
            polypeptide 1 [Drosophila simulans]
            >gi|7716864|gb|AAF68582.1|AF252799_1 (AF252799) t-complex
            polypeptide 1 [Drosophila simulans]
            >gi|7716866|gb|AAF68583.1|AF252800_1 (AF252800) t-complex
            polypeptide 1 [Drosophila simulans]
            >gi|7716868|gb|AAF68584.1|AF252801_1 (AF252801) t-complex
            polypeptide 1 [Drosophila simulans]
            Length = 379

Frame  2 hits (HSPs):                                               _____ 
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300

  Plus Strand HSPs:

 Score = 88 (31.0 bits), Expect = 0.027, P = 0.027
 Identities = 20/26 (76%), Positives = 24/26 (92%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL-VKDES 103
             ++FATEAAITILRIDDMIKL  +D+S
Sbjct:   342 LKFATEAAITILRIDDMIKLNPEDKS 367


 >gi|7716938|gb|AAF68619.1|AF255324_1  (AF255324) t-complex polypeptide 1
            [Drosophila simulans]
            Length = 379

Frame  2 hits (HSPs):                                               _____ 
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300

  Plus Strand HSPs:

 Score = 88 (31.0 bits), Expect = 0.027, P = 0.027
 Identities = 20/26 (76%), Positives = 24/26 (92%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL-VKDES 103
             ++FATEAAITILRIDDMIKL  +D+S
Sbjct:   342 LKFATEAAITILRIDDMIKLNPEDKS 367


 >gi|135537|sp|P12613|TCPA_DROME  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|85154|pir||JT0367 Tcp-1 protein -
            fruit fly (Drosophila melanogaster) >gi|158534|gb|AAA28927.1|
            (M21159) T complex protein [Drosophila melanogaster]
            Length = 557

Frame  2 hits (HSPs):                                                 ___ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 557
                       0           150          300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    24..66
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    68..117
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    148..179
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    202..220
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    294..330
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    374..414
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    435..474
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    500..534
   DOMO                 DM00057: HEATSHOCKPROTEINGROEL           2..540
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 31..538
   PRINTS               1: TCP-1 chaperone motif I - 33..49
   PRINTS               2: TCP-1 chaperone motif II  55..73
   PRINTS               3: TCP-1 chaperone motif III 85..104
   PRINTS               4: TCP-1 chaperone motif IV  377..399
   PRINTS               5: TCP-1 chaperone motif V - 411..423
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      14..185
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      188..255
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        257..381
   PRODOM               PD186464: TCPA(6) O94501(1) TCP1(1)      402..428
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      430..540
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   36..48
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   57..73
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   85..93
__________________


  Plus Strand HSPs:

 Score = 88 (31.0 bits), Expect = 0.046, P = 0.045
 Identities = 20/26 (76%), Positives = 24/26 (92%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL-VKDES 103
             ++FATEAAITILRIDDMIKL  +D+S
Sbjct:   517 LKFATEAAITILRIDDMIKLNPEDKS 542


 >gi|7300868|gb|AAF56009.1|  (AE003739) T-cp1 gene product [Drosophila
            melanogaster]
            Length = 557

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 557
                       0           150          300           450

  Plus Strand HSPs:

 Score = 88 (31.0 bits), Expect = 0.046, P = 0.045
 Identities = 20/26 (76%), Positives = 24/26 (92%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL-VKDES 103
             ++FATEAAITILRIDDMIKL  +D+S
Sbjct:   517 LKFATEAAITILRIDDMIKLNPEDKS 542


 >gi|1093957|prf||2105197A  chaperonin t complex protein 1 [Ambystoma mexicanum]
            Length = 173

Frame  2 hits (HSPs):                                        ________     
                        __________________________________________________
Database sequence:     |              |             |              |      | 173
                       0             50           100            150

  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 0.061, P = 0.059
 Identities = 16/25 (64%), Positives = 21/25 (84%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDES 103
             ++FATEAAITILRIDD+I L  + +
Sbjct:   132 LKFATEAAITILRIDDLIDLYPESN 156


 >gi|135538|sp|P17987|TCPA_HUMAN  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|107851|pir||S10486 t-complex-type
            molecular chaperone TCP1 - human
            >gi|12653759|gb|AAH00665.1|AAH00665 (BC000665) Unknown (protein for
            MGC:2234) [Homo sapiens]
            Length = 556

Frame  2 hits (HSPs):                                                 ___ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    21..63
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    65..114
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    145..176
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    199..217
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    291..327
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    371..411
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    432..471
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    497..531
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 28..535
   PRINTS               1: TCP-1 chaperone motif I - 30..46
   PRINTS               2: TCP-1 chaperone motif II  52..70
   PRINTS               3: TCP-1 chaperone motif III 82..101
   PRINTS               4: TCP-1 chaperone motif IV  374..396
   PRINTS               5: TCP-1 chaperone motif V - 408..420
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      10..182
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      185..252
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        254..371
   PRODOM               PD187032: TCPA(3) TCP1(1) TCP2(1)        373..397
   PRODOM               PD186464: TCPA(6) O94501(1) TCP1(1)      399..425
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      427..538
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   33..45
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   54..70
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   82..90
__________________


  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.075, P = 0.072
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:   514 LKFATEAAITILRIDDLIKL-HPESKDD 540


 >gi|6981642  ref|NP_036802.1| T-complex 1 [Rattus norvegicus]
            >gi|135539|sp|P28480|TCPA_RAT T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) >gi|112357|pir||JQ0866 T-complex protein
            1 - rat >gi|220915|dbj|BAA14357.1| (D90345) t complex polypeptide 1
            [Rattus norvegicus]
            Length = 556

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.075, P = 0.072
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:   514 LKFATEAAITILRIDDLIKL-HPESKDD 540


 >gi|228954|prf||1814462A  T complex protein 1 [Mus musculus]
            Length = 556

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.075, P = 0.072
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:   514 LKFATEAAITILRIDDLIKL-HPESKDD 540


 >gi|1729865|sp|P11983|TCP2_MOUSE  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT B
            (TCP-1-ALPHA) (CCT-ALPHA) (TAILLESS COMPLEX POLYPEPTIDE 1B)
            (TCP-1-B) >gi|346955|pir||JC1443 t complex polypeptide 1 - mouse
            >gi|258450|gb|AAB23855.1| (S46763) t-complex polypeptide 1, TCP-1
            [mice, Peptide, 556 aa] [Mus sp.] >gi|475019|dbj|BAA01461.1|
            (D10606) t-complex polypeptide 1 [Mus musculus]
            Length = 556

Frame  2 hits (HSPs):                                                 ___ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    21..63
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    65..114
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    145..176
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    199..217
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    291..327
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    371..411
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    432..471
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    497..531
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 28..535
   PRINTS               1: TCP-1 chaperone motif I - 30..46
   PRINTS               2: TCP-1 chaperone motif II  52..70
   PRINTS               3: TCP-1 chaperone motif III 82..101
   PRINTS               4: TCP-1 chaperone motif IV  374..396
   PRINTS               5: TCP-1 chaperone motif V - 408..420
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      10..182
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      185..252
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        254..371
   PRODOM               PD187032: TCPA(3) TCP1(1) TCP2(1)        373..397
   PRODOM               PD186464: TCPA(6) O94501(1) TCP1(1)      399..425
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      427..538
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   33..45
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   54..70
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   82..90
__________________


  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.075, P = 0.072
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:   514 LKFATEAAITILRIDDLIKL-HPESKDD 540


 >gi|4973194|gb|AAD34973.1|AF143497_1  (AF143497) t-complex polypeptide 1
            [Monodelphis domestica]
            Length = 557

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 557
                       0           150          300           450

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.075, P = 0.072
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:   514 LKFATEAAITILRIDDLIKL-HPESKDD 540


 >gi|4973192|gb|AAD34972.1|AF143496_1  (AF143496) t-complex polypeptide 1
            [Paleosuchus palpebrosus]
            Length = 559

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 559
                       0           150          300           450

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.076, P = 0.073
 Identities = 19/28 (67%), Positives = 25/28 (89%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   ES+++
Sbjct:   517 LKFATEAAITILRIDDLIKL-HPESKDD 543


 >gi|4973189|gb|AAD34971.1|AF143494_1  (AF143494) t-complex polypeptide 1
            [Xenopus laevis]
            Length = 555

Frame  2 hits (HSPs):                                                 ___ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 555
                       0           150          300           450

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 0.12, P = 0.12
 Identities = 19/28 (67%), Positives = 24/28 (85%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNE 112
             ++FATEAAITILRIDD+IKL   E++ E
Sbjct:   514 LKFATEAAITILRIDDVIKL-HPEAKEE 540


 >gi|36796|emb|CAA37064.1|  (X52882) t-complex polypeptide 1 (AA 1-556) [Homo
            sapiens]
            Length = 556

Frame  2 hits (HSPs):                                                 __  
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 0.12, P = 0.12
 Identities = 17/20 (85%), Positives = 20/20 (100%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL 88
             ++FATEAAITILRIDD+IKL
Sbjct:   514 LKFATEAAITILRIDDLIKL 533


 >gi|7305565  ref|NP_038714.1| t-complex protein 1 [Mus musculus]
            >gi|1351207|sp|P11984|TCP1_MOUSE T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            A (TCP-1-ALPHA) (CCT-ALPHA) (TAILLESS COMPLEX POLYPEPTIDE 1A)
            (TCP-1-A) >gi|91328|pir||JH0475 t complex polypeptide 1 (allele A)
            - mouse >gi|220607|dbj|BAA14356.1| (D90344) t-complex polypeptide
            1A [Mus musculus]
            Length = 556

Frame  2 hits (HSPs):                                                 __  
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 0.12, P = 0.12
 Identities = 17/20 (85%), Positives = 20/20 (100%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL 88
             ++FATEAAITILRIDD+IKL
Sbjct:   514 LKFATEAAITILRIDDLIKL 533


 >gi|135536|sp|P18279|TCPA_CRIGR  T-COMPLEX PROTEIN 1, ALPHA SUBUNIT
            (TCP-1-ALPHA) (CCT-ALPHA) (65 KD ANTIGEN) >gi|109407|pir||S13163
            t-complex-type molecular chaperone TCP-1 - Chinese hamster
            >gi|304527|gb|AAA37020.1| (M34665) T-complex protein 1 [Cricetulus
            griseus]
            Length = 556

Frame  2 hits (HSPs):                                                 __  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 556
                       0           150          300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    21..63
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    65..114
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    145..176
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    199..217
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    291..327
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    371..411
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    432..471
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    497..531
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 28..535
   PRINTS               1: TCP-1 chaperone motif I - 30..46
   PRINTS               2: TCP-1 chaperone motif II  52..70
   PRINTS               3: TCP-1 chaperone motif III 82..101
   PRINTS               4: TCP-1 chaperone motif IV  374..396
   PRINTS               5: TCP-1 chaperone motif V - 408..420
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      10..182
   PRODOM               PD186353: TCPA(8) O94501(1) TCP1(1)      185..252
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        254..371
   PRODOM               PD187032: TCPA(3) TCP1(1) TCP2(1)        373..397
   PRODOM               PD186464: TCPA(6) O94501(1) TCP1(1)      399..425
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      427..539
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   33..45
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   54..70
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   82..90
__________________


  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 0.12, P = 0.12
 Identities = 17/20 (85%), Positives = 20/20 (100%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKL 88
             ++FATEAAITILRIDD+IKL
Sbjct:   514 LKFATEAAITILRIDDLIKL 533


 >gi|2143475|pir||A48911  gene Tcp-1x protein - mouse (fragment)
            >gi|461132|gb|AAB29692.1| (S67969) Tcp-1x {C-terminal} [mice,
            Peptide Partial, 39 aa] [Mus sp.]
            Length = 39

Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |                        |                         | 39
                       0                       20

  Plus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 0.14, P = 0.13
 Identities = 17/24 (70%), Positives = 21/24 (87%), Frame = +2

Query:    41 TEAAITILRIDDMIKLVKDESQNE 112
             TEAAITILRIDD+IKL   ES+++
Sbjct:     1 TEAAITILRIDDLIKL-HPESKDD 23


 >gi|11277152|pir||T43895  t-complex-type molecular chaperone TCP1 homolog
            [imported] - slime mold (Dictyostelium discoideum)
            >gi|3399689|dbj|BAA32082.1| (AB008158) t-complex polypeptide 1
            homologue [Dictyostelium discoideum]
            Length = 548

Frame  2 hits (HSPs):                                                 ____
                        __________________________________________________
Database sequence:     |             |             |            |         | 548
                       0           150           300          450

  Plus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 0.20, P = 0.18
 Identities = 19/29 (65%), Positives = 21/29 (72%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQNED 115
             I+FATE+AITILRIDD I L   E Q  D
Sbjct:   514 IKFATESAITILRIDDKITLNPREQQGGD 542


 >gi|1351245|sp|P48425|THSB_THEAC  THERMOSOME, BETA SUBUNIT
            >gi|1076175|pir||S53817 thermosome beta chain - Thermoplasma
            acidophilum >gi|4699706|pdb|1A6D|B Chain B, Thermosome From T.
            Acidophilum >gi|4699708|pdb|1A6E|B Chain B, Thermosome -
            Mg-Adp-Alf3 Complex >gi|600084|emb|CAA86611.1| (Z46650) thermosome
            beta-subunit [Thermoplasma acidophilum]
            >gi|10640622|emb|CAC12400.1| (AL445067) thermosome beta chain
            [Thermoplasma acidophilum]
            Length = 543

Frame  2 hits (HSPs):                                                _____
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 543
                       0           150           300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    26..68
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    70..119
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    149..180
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    202..220
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    294..330
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    368..408
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    429..468
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    486..520
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 33..524
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      7..184
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        193..394
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      424..520
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   38..50
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   59..75
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   87..95
__________________


  Plus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 0.53, P = 0.41
 Identities = 22/49 (44%), Positives = 27/49 (55%), Frame = +2

Query:     8 IRPLRPG---IQFATEAAITILRIDDMIKLVKDESQNED*SITESKEAS 145
             I P+R G   I+ ATEAAI ILRIDD+I      S +       S E+S
Sbjct:   493 IEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPKSGSSSESS 541


 >gi|2501144|sp|Q53546|THS_DESSY  THERMOSOME SUBUNIT (HYPERTHERMOPHILIC HEAT
            SHOCK PROTEIN) (HHSP) >gi|2129425|pir||JC4270 hyperthermophilic
            heat shock protein - Desulfurococcus mobilis
            >gi|1168091|gb|AAB35235.1| (S79557) hyperthermophilic heat shock
            protein, HHSP [Desulfurococcus, SY, Peptide, 545 aa]
            Length = 545

Frame  2 hits (HSPs):                                                ____ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 545
                       0           150           300           450
__________________

Annotated Domains:
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 35..526
   PRINTS               1: TCP-1 chaperone motif I - 37..53
   PRINTS               2: TCP-1 chaperone motif II  59..77
   PRINTS               3: TCP-1 chaperone motif III 89..108
   PRINTS               4: TCP-1 chaperone motif IV  373..395
   PRINTS               5: TCP-1 chaperone motif V - 407..419
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      11..187
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        194..401
   PRODOM               PD209911: THS_DESSY                      403..424
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      426..530
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   40..52
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   61..77
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   89..97
__________________


  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 0.68, P = 0.49
 Identities = 22/39 (56%), Positives = 25/39 (64%), Frame = +2

Query:     8 IRPLR-P--GIQFATEAAITILRIDDMIKLVKDESQNED 115
             I PLR P   I+ A+EAAI ILRIDD+I   K E   ED
Sbjct:   495 IAPLRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKED 533


 >gi|10567606|gb|AAG18500.1|AF226720_1  (AF226720) chaperonin subunit alpha
            CCTalpha [Giardia intestinalis]
            Length = 550

Frame  2 hits (HSPs):                                                  ___
                        __________________________________________________
Database sequence:     |             |             |            |         | 550
                       0           150           300          450

  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 0.68, P = 0.50
 Identities = 15/27 (55%), Positives = 21/27 (77%), Frame = +2

Query:    29 IQFATEAAITILRIDDMIKLVKDESQN 109
             + FA EAA+TILRIDD I+L  ++ Q+
Sbjct:   519 LSFAVEAAVTILRIDDSIRLNPEQQQS 545


 >gi|6647860|sp|O57762|THS_PYRHO  THERMOSOME SUBUNIT >gi|7441897|pir||F71219
            probable thermophilic factor - Pyrococcus horikoshii
            >gi|3256402|dbj|BAA29085.1| (AP000001) 549aa long hypothetical
            thermophilic factor [Pyrococcus horikoshii]
            Length = 549

Frame  2 hits (HSPs):                                                _____
                        __________________________________________________
Database sequence:     |             |             |            |         | 549
                       0           150           300          450

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 4.3, P = 0.99
 Identities = 22/51 (43%), Positives = 29/51 (56%), Frame = +2

Query:     8 IRPLRPGIQFATEAAITILRIDDMIKLVKDESQNED*SITESKEASTSQCL 160
             +R  +  I+ A+EAAI ILRIDD+I   K E + E      S+E S S  L
Sbjct:   498 VRVKKQAIKSASEAAIMILRIDDVIAASKLEKEKEGEKGGGSEEFSGSSDL 548


 >gi|12619653|gb|AAG60488.1|AF215060_1  (AF215060) conotoxin scaffold VI/VII
            precursor [Conus arenatus]
            Length = 79

Frame  2 hits (HSPs):                          ___________________________
                        __________________________________________________
Database sequence:     |            |           |            |            | 79
                       0           20          40           60

  Plus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 6.7, P = 1.0
 Identities = 13/42 (30%), Positives = 17/42 (40%), Frame = +2

Query:   125 TESKEASTSQCLQKGEFC----RLC--WCAFKEGICILSSMP 232
             T+     T QC   G  C      C  WC    G+C+ +S P
Sbjct:    38 TDKNSKLTRQCSPNGGSCSRHYHCCSLWCNKDSGVCVATSYP 79


 >gi|3024740|sp|O24730|THSB_THEK1  THERMOSOME, BETA SUBUNIT (CHAPERONIN BETA
            SUBUNIT)
            Length = 546

Frame  2 hits (HSPs):                                                ____ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 546
                       0           150           300           450
__________________

Annotated Domains:
   BLOCKS               BL00750A: Chaperonins TCP-1 proteins.    28..70
   BLOCKS               BL00750B: Chaperonins TCP-1 proteins.    72..121
   BLOCKS               BL00750C: Chaperonins TCP-1 proteins.    151..182
   BLOCKS               BL00750D: Chaperonins TCP-1 proteins.    204..222
   BLOCKS               BL00750E: Chaperonins TCP-1 proteins.    296..332
   BLOCKS               BL00750F: Chaperonins TCP-1 proteins.    370..410
   BLOCKS               BL00750G: Chaperonins TCP-1 proteins.    431..470
   BLOCKS               BL00750H: Chaperonins TCP-1 proteins.    488..522
   PFAM                 cpn60_TCP1: TCP-1/cpn60 chaperonin famil 35..526
   PRINTS               1: TCP-1 chaperone motif I - 37..53
   PRINTS               2: TCP-1 chaperone motif II  59..77
   PRINTS               3: TCP-1 chaperone motif III 89..108
   PRINTS               4: TCP-1 chaperone motif IV  373..395
   PRINTS               5: TCP-1 chaperone motif V - 407..419
   PRODOM               PD000186: CH60(86) CH61(12) CH62(9)      11..187
   PRODOM               PD136023: TCPA(9) TCPG(7) THSB(6)        194..401
   PRODOM               PD209910: THSB_THEK1                     403..424
   PRODOM               PD000184: CH60(84) CH61(12) CH62(9)      426..530
   PROSITE              TCP1_1: Chaperonins TCP-1 signature 1.   40..52
   PROSITE              TCP1_2: Chaperonins TCP-1 signature 2.   61..77
   PROSITE              TCP1_3: Chaperonins TCP-1 signature 3.   89..97
__________________


  Plus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 9.1, P = 1.0
 Identities = 18/35 (51%), Positives = 22/35 (62%), Frame = +2

Query:     8 IRPLRPGIQFATEAAITILRIDDMIKLVKDESQNE 112
             +R  +  I+ ATEAAI ILRIDD+I   K E   E
Sbjct:   498 VRVPKQAIKSATEAAIMILRIDDVIAASKLEKDKE 532


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.92

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.350   0.156   0.514  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.333   0.144   0.448  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.381   0.179   0.724  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.365   0.163   0.671  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.357   0.161   0.555  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.353   0.154   0.497  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      115       104       10.  68 3  12 22  0.11    32
                                                    29  0.11    34
   +2      0      115       104       10.  68 3  12 22  0.11    32
                                                    29  0.11    34
   +1      0      115       106       10.  69 3  12 22  0.11    32
                                                    29  0.11    34
   -1      0      115       105       10.  68 3  12 22  0.11    32
                                                    29  0.11    34
   -2      0      115       104       10.  68 3  12 22  0.11    32
                                                    29  0.11    34
   -3      0      115       104       10.  68 3  12 22  0.11    32
                                                    29  0.11    34


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  39
  No. of states in DFA:  589 (58 KB)
  Total size of DFA:  140 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  95.29u 1.02s 96.31t  Elapsed: 00:00:24
  Total cpu time:  95.32u 1.05s 96.37t  Elapsed: 00:00:24
  Start:  Wed Jan 23 10:14:35 2002   End:  Wed Jan 23 10:14:59 2002


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000