D simpleB2

DTASelect v1.9
/auto/gtl/misc/Chandra/bradRibo/run1D/dbdigger/arabiU/simpleB2
/home/51n/myMS/db/arabi/arabi_rPalRiboU_1b2.fasta
DBDigger 0.5 in SQT format.
-1 24.53539 -2 33.10237 -3 37.25865 --DB -d 0.1 -p 2
Jump to the summary table.

sequest.params modifications:

true	Use criteria
24.53539	Minimum +1 XCorr
33.10237	Minimum +2 XCorr
37.25865	Minimum +3 XCorr
0.1	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

RPA3246

96.7%

10220

10.4

rpsS 30S ribosomal protein S19 3656696:3656974 reverse MW:10219

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1207.1207.3	63.8948	0.371065	1817.09	1817.18	1	245.0	63.0%	2	M.VRSVWKGPFVEASLLK.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1023.1023.2	63.522	0.350594	1818.57	1817.18	1	232.0	76.7%	3	M.VRSVWKGPFVEASLLK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.934.934.2	57.1778	0.251234	1945.07	1945.36	1	83.0	75.0%	2	M.VRSVWKGPFVEASLLKK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1105.1105.3	71.0125	0.376484	1945.49	1945.36	1	251.0	73.2%	3	M.VRSVWKGPFVEASLLKK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.952.952.3	68.5481	0.423358	2430.08	2429.87	1	217.0	70.1%	1	M.VRSVWKGPFVEASLLKKADAAR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.784.784.3	44.5706	0.190671	1524.68	1525.75	1	253.0	70.3%	1	R.ASGRHDVIKIWSR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.644.644.2	50.9023	0.386073	1524.95	1525.75	1	48.0	65.2%	3	R.ASGRHDVIKIWSR.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.715.715.3	43.247	0.289706	1682.24	1681.94	1	230.0	64.3%	1	R.ASGRHDVIKIWSRR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1347.1347.2	72.8352	0.485703	2071.11	2070.4	1	141.0	81.2%	2	R.STILPQFVGLTFGVYNGQK.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1574.1574.3	63.8012	0.442274	2073.38	2070.4	1	249.0	71.0%	1	R.STILPQFVGLTFGVYNGQK.H	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.789.789.2	77.0701	0.535016	2483.31	2484.8	1	39.0	82.8%	2	K.HVPVSVNEEMVGHKFGEFSPTR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.887.887.3	53.6187	0.40683	2484.59	2484.8	1	151.0	54.3%	2	K.HVPVSVNEEMVGHKFGEFSPTR.T	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.254.254.2	53.0828	0.434246	1312.85	1313.46	1	80.0	77.3%	1	R.TFHGHAGDKKSK.K	2

RPA3270

90.9%

186

19171

10.0

rplJ 50S ribosomal protein L10 3688040:3688600 reverse MW:19171

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1265.1265.3	69.1265	0.571613	3695.93	3693.26	1	237.0	65.6%	2	R.AAKKEAVESLNGLFQTTSVAIVAHYSGLTVAQMQK.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.526.526.3	42.015	0.206959	2341.58	2342.82	1	66.0	63.1%	1	K.LRQQMKQAGASVKVSKNRLAK.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1214.1214.2	67.0266	0.398775	2510.53	2510.89	1	168.0	70.6%	3	K.IALEGTDVAAIGPLLKGPTVIATSSD.P	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1284.1284.3	60.4645	0.40775	3073.85	3074.59	1	171.0	66.7%	3	K.IALEGTDVAAIGPLLKGPTVIATSSDPVAAPK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1238.1238.2	47.991	0.214503	3074.25	3074.59	1	97.0	68.8%	3	K.IALEGTDVAAIGPLLKGPTVIATSSDPVAAPK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1224.1224.3	41.8306	0.339452	3818.39	3819.48	1	91.0	58.9%	1	K.IALEGTDVAAIGPLLKGPTVIATSSDPVAAPKVAVEFAK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.557.557.2	56.7101	0.389705	1206.65	1206.38	1	177.0	89.5%	1	K.VAVEFAKANEK.F	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1251.1251.3	60.8298	0.367151	3095.12	3095.63	1	227.0	68.9%	1	K.VAVEFAKANEKFVILGGSMGTTVLNVDGVK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1135.1135.2	50.8504	0.366164	3096.65	3095.63	1	98.0	73.3%	1	K.VAVEFAKANEKFVILGGSMGTTVLNVDGVK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1081.1081.2	84.4297	0.483806	2350.41	2350.74	1	180.0	90.6%	3	K.ANEKFVILGGSMGTTVLNVDGVK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1570.1570.3	38.924	0.220399	3174.95	3174.73	1	245.0	57.6%	1	K.FVILGGSMGTTVLNVDGVKALASLPSLDELR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1082.1082.2	49.4954	0.252868	1285.31	1285.48	1	144.0	77.3%	1	K.ALASLPSLDELR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.910.910.1	31.2018	0.125208	1484.91	1484.74	1	36.0	61.9%	1	K.ALASLPSLDELRAK.L	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1019.1019.2	48.2689	0.319665	1485.83	1484.74	1	136.0	68.0%	3	K.ALASLPSLDELRAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1466.1466.3	40.8147	0.266095	2565.53	2563.06	1	75.0	54.8%	1	K.ALASLPSLDELRAKLVGLVQAPATK.I	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1465.1465.3	37.5135	0.240162	3614.63	3615.3	1	162.0	62.1%	1	K.ALASLPSLDELRAKLVGLVQAPATKIAQVTTAPAAK.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.640.640.1	48.7409	0.34328	1295.9	1296.6	1	153.0	90.0%	1	R.AKLVGLVQAPATK.I	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.876.876.2	71.0471	0.411492	1296.29	1296.6	1	244.0	79.2%	2	R.AKLVGLVQAPATK.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.744.744.1	46.716	0.251374	1096.73	1097.34	1	238.0	94.1%	4	K.LVGLVQAPATK.I	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.974.974.2	62.7271	0.413952	2148.67	2149.58	1	32.0	71.4%	3	K.LVGLVQAPATKIAQVTTAPAAK.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.969.969.3	54.539	0.381743	2150.33	2149.58	1	182.0	66.7%	1	K.LVGLVQAPATKIAQVTTAPAAK.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.359.359.1	38.3983	0.201144	1070.7	1071.26	1	154.0	77.8%	3	K.IAQVTTAPAAK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.409.409.2	54.3686	0.359947	1070.97	1071.26	1	231.0	80.0%	3	K.IAQVTTAPAAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.660.660.2	47.2162	0.27836	1411.09	1411.69	1	228.0	68.0%	1	K.IAQVTTAPAAKLAR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.354.354.2	64.1139	0.463428	1224.15	1224.36	1	111.0	85.7%	2	R.VVQAYASKSEAA.-	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.334.334.1	44.7297	0.191412	1224.62	1224.36	1	169.0	77.8%	1	R.VVQAYASKSEAA.-	1

RPA3232

90.6%

7225

10.3

rpmD ribosomal protein L30 3650679:3650873 reverse MW:7224

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.891.891.3	39.7905	0.108126	1984.94	1983.39	1	149.0	60.0%	1	M.AKAANMIKVEQIGSPIRR.H	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.454.454.2	51.547	0.404642	1417.79	1419.63	1	20.0	85.0%	3	R.HHSQRETLIGLK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.712.712.3	52.6005	0.371641	2101.37	2101.46	1	103.0	66.7%	1	R.HHSQRETLIGLKLNKIGR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.589.589.1	43.9885	0.242532	1256.94	1257.39	1	224.0	88.2%	2	R.VAELQDTPEVR.G	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.689.689.2	65.005	0.35522	1257.13	1257.39	1	250.0	94.1%	3	R.VAELQDTPEVR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.865.865.2	62.2881	0.290397	1238.67	1238.54	1	226.0	94.1%	3	R.GMIGKVQHLVR.V	2

RPA0493

89.1%

101

10979

10.8

rpmB, L28 50S ribosomal protein L28 546167:546472 forward MW:10978

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.562.562.3	47.0735	0.286641	2507.39	2507.88	1	64.0	62.5%	1	M.SRRCELTAKGAQVGHKVSHSNIK.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.254.254.3	39.6399	0.1802	1462.25	1462.65	1	114.0	63.6%	1	K.GAQVGHKVSHSNIK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.252.252.2	59.3412	0.433166	1690.45	1691.93	1	4.0	75.0%	1	K.GAQVGHKVSHSNIKTK.R	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.249.249.1	54.5263	0.389808	1690.61	1691.93	1	166.0	87.0%	1	K.GAQVGHKVSHSNIKTK.R	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.253.253.3	45.1519	0.330755	1691.81	1691.93	1	86.0	64.6%	2	K.GAQVGHKVSHSNIKTK.R	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1244.1244.3	56.7394	0.394488	2219.03	2219.6	1	244.0	61.5%	2	K.RRFLPNLVNVTFLSDTLGR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1384.1384.2	82.1889	0.517031	2064.55	2063.41	1	28.0	90.3%	3	R.RFLPNLVNVTFLSDTLGR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1549.1549.3	60.1751	0.360614	2064.59	2063.41	1	203.0	64.4%	1	R.RFLPNLVNVTFLSDTLGR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1489.1489.2	70.8513	0.482732	1906.59	1907.22	1	99.0	85.7%	5	R.FLPNLVNVTFLSDTLGR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1425.1425.3	70.2352	0.461405	1908.41	1907.22	1	167.0	77.8%	3	R.FLPNLVNVTFLSDTLGR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.706.706.2	44.5737	0.177495	1002.45	1002.2	1	198.0	76.5%	1	R.LRVSTNALK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.296.296.1	31.4193	0.106072	732.53	732.856	1	144.0	90.9%	1	R.VSTNALK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.910.910.3	40.8817	0.134441	2258.21	2258.58	1	200.0	57.6%	1	R.VSTNALKSVDHRGGLDAYLLK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.812.812.2	43.29	0.249457	2258.37	2258.58	1	146.0	62.5%	1	R.VSTNALKSVDHRGGLDAYLLK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.800.800.2	40.741	0.192303	1544.13	1544.75	1	40.0	60.0%	2	K.SVDHRGGLDAYLLK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.954.954.3	48.58	0.13515	1545.02	1544.75	1	244.0	70.5%	1	K.SVDHRGGLDAYLLK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.651.651.2	54.914	0.350796	1470.39	1470.71	1	84.0	82.6%	2	R.EAELSPKAVELKR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.790.790.3	42.5312	0.242488	1471.28	1470.71	1	78.0	70.5%	2	R.EAELSPKAVELKR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.514.514.1	29.2723	0.1153	745.31	745.874	1	226.0	80.0%	1	K.MAGEPVAA.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.480.480.1	28.0852	0.150449	903.24	904.031	1	221.0	66.7%	2	K.MAGEPVAAAS.-	1

RPA2768

88.8%

160

17497

10.6

rpsI, S9 ribosomal protein S9 3139487:3139969 forward MW:17497

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.965.965.1	35.116	0.293211	1534.37	1535.76	1	152.0	61.9%	1	M.SETMQSLDQLAALK.T	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1080.1080.2	66.3967	0.425374	1536.03	1535.76	1	207.0	84.6%	1	M.SETMQSLDQLAALK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1145.1145.3	62.3518	0.488392	2842.76	2843.18	1	236.0	64.5%	2	M.SETMQSLDQLAALKTTVTGADAPTYTK.K	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1029.1029.2	71.2196	0.485126	2842.83	2843.18	1	244.0	72.7%	3	M.SETMQSLDQLAALKTTVTGADAPTYTK.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.972.972.2	42.9142	0.281569	2972.11	2971.36	1	244.0	56.2%	1	M.SETMQSLDQLAALKTTVTGADAPTYTKK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.949.949.3	51.0156	0.359447	3673.91	3674.17	1	235.0	63.5%	2	M.SETMQSLDQLAALKTTVTGADAPTYTKKVDKFGR.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.919.919.2	79.1653	0.44758	2266.07	2266.55	1	232.0	84.8%	2	Q.SLDQLAALKTTVTGADAPTYTK.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.572.572.2	51.807	0.345289	1755.43	1754.98	1	93.0	63.0%	1	T.GADAPTYTKKVDKFGR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.250.250.2	47.2049	0.242894	1407.01	1407.62	1	194.0	75.0%	1	R.AYATGKRKDAVAR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.280.280.3	40.4204	0.232254	1407.56	1407.62	1	225.0	66.7%	1	R.AYATGKRKDAVAR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.377.377.2	41.5336	0.111856	956.152	956.176	1	216.0	80.0%	1	R.VWIKPGAGK.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.615.615.1	34.645	0.233936	1626.14	1626.94	1	32.0	73.9%	1	R.VWIKPGAGKITVNSR.E	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.712.712.3	41.174	0.293119	1627.34	1626.94	1	250.0	63.3%	1	R.VWIKPGAGKITVNSR.E	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.959.959.2	39.2293	0.108814	3087.21	3088.63	1	0.0	57.1%	1	R.VWIKPGAGKITVNSREVETYFARPVLR.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1045.1045.2	71.5282	0.389899	1329.09	1329.67	1	221.0	90.9%	3	R.MMIQQPLVAAAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1071.1071.2	107.263	0.639083	2150.07	2151.41	1	205.0	86.5%	3	R.AGQYDVICTVAGGGLSGQAGAVR.H	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1072.1072.3	65.5844	0.42284	2152.55	2151.41	1	216.0	65.8%	2	R.AGQYDVICTVAGGGLSGQAGAVR.H	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.871.871.2	63.1725	0.387501	2673.99	2674.01	1	162.0	70.3%	2	R.AGQYDVICTVAGGGLSGQAGAVRHGISK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.968.968.3	42.9744	0.288672	2674.37	2674.01	1	95.0	53.0%	1	R.AGQYDVICTVAGGGLSGQAGAVRHGISK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.907.907.2	51.882	0.31583	1190.21	1190.34	1	170.0	78.9%	3	K.ALTNFEPELR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.746.746.2	50.7894	0.268649	1206.97	1206.47	1	196.0	81.0%	2	R.SVLKKGGFLTR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.466.466.2	36.5256	0.126309	900.292	900.025	1	170.0	76.9%	1	R.SFQFSKR.-	2

RPA0918

88.0%

8568

9.1

RPA0918 possible 50S ribosomal protein L31 1020328:1020555 reverse MW:8567

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.985.985.3	70.8627	0.555018	2968.07	2968.34	1	255.0	64.8%	2	-.MKTEIHPDYHTITVVMTDGTEYQTR.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.869.869.2	80.7482	0.528866	2969.23	2968.34	1	151.0	92.6%	2	-.MKTEIHPDYHTITVVMTDGTEYQTR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.872.872.2	42.0088	0.180798	1914.37	1917.13	1	136.0	56.7%	2	R.STWGKEGDKLNLDIDPK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.651.651.1	36.7098	0.356777	1652.75	1653.8	1	160.0	78.3%	1	K.SHPAWTGGTQQVLDR.G	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.541.541.1	42.8385	0.184068	1069.67	1070.28	1	197.0	92.9%	1	K.KFSGFLKKD.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.745.745.2	38.8945	0.159344	942.232	942.103	1	16.0	75.0%	1	K.FSGFLKKD.-	2 3

RPA3250

87.1%

241

25608

10.1

rplC 50S ribosomal protein L3 3658754:3659479 reverse MW:25608

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.594.594.2	65.2328	0.379616	1534.47	1534.89	1	49.0	83.3%	3	-.MRSGVIAQKVGMTR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.614.614.3	40.9575	0.269904	1536.38	1534.89	1	254.0	54.9%	3	-.MRSGVIAQKVGMTR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.924.924.2	63.5174	0.402957	1640.71	1640.92	1	236.0	80.0%	2	R.VFTEAGEHIPVTVLK.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.819.819.1	42.7648	0.272935	1640.84	1640.92	1	153.0	78.3%	1	R.VFTEAGEHIPVTVLK.L	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1101.1101.3	69.4068	0.468149	2719.1	2719.18	1	248.0	70.8%	1	R.VFTEAGEHIPVTVLKLGNCQVLGHR.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.987.987.2	54.1821	0.324779	2719.33	2719.18	1	211.0	63.3%	1	R.VFTEAGEHIPVTVLKLGNCQVLGHR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.572.572.2	52.3732	0.378833	1097.25	1097.29	1	225.0	83.3%	2	K.LGNCQVLGHR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.337.337.2	45.1107	0.277683	1583.97	1583.86	1	148.0	64.0%	1	K.LGNCQVLGHRTKEK.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.435.435.2	71.6757	0.440862	1922.31	1923.18	1	124.0	82.8%	2	R.TKEKNGYVALQVGSGSRK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.505.505.3	40.3994	0.171738	1923.11	1923.18	1	168.0	55.7%	1	R.TKEKNGYVALQVGSGSRK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.430.430.1	34.7087	0.111061	738.4	738.925	1	248.0	100.0%	1	K.TVYMPK.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.514.514.2	36.164	0.165679	1098.11	1095.31	1	8.0	70.6%	1	K.TVYMPKAER.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.418.418.2	63.812	0.400744	1147.05	1146.33	1	236.0	85.0%	2	R.GQFAAAKVEPK.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1315.1315.3	41.5423	0.297049	4194.77	4193.73	1	128.0	56.4%	1	R.VSEDALLPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKR.W	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.794.794.2	46.0672	0.385836	1881.37	1882.1	1	27.0	53.3%	2	R.WNFGGLRATHGVSVSHR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.950.950.3	52.7838	0.376284	1882.13	1882.1	1	207.0	62.5%	2	R.WNFGGLRATHGVSVSHR.S	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.246.246.1	32.0763	0.244598	1050.55	1051.15	1	161.0	70.6%	1	R.ATHGVSVSHR.S	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.274.274.2	53.1258	0.36871	1051.29	1051.15	1	98.0	78.9%	1	R.ATHGVSVSHR.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.788.788.2	34.8789	0.20726	1925.99	1926.32	1	25.0	56.7%	1	K.KMPGHMGVDRVTTLNLR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.329.329.2	47.6319	0.280963	946.672	946.049	1	42.0	86.7%	3	R.VVQTDVER.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1211.1211.2	63.4706	0.327777	2180.95	2181.54	1	90.0	72.7%	2	R.VVQTDVERGLILVEGAVPGTK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.957.957.1	46.3438	0.354166	1253.71	1254.51	1	192.0	90.0%	3	R.GLILVEGAVPGTK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1134.1134.2	52.017	0.275431	1254.49	1254.51	1	222.0	73.9%	2	R.GLILVEGAVPGTK.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1121.1121.2	62.8079	0.336755	1825.03	1824.18	1	188.0	75.0%	2	R.GLILVEGAVPGTKGGWIR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.669.669.3	51.0387	0.323586	1497.77	1496.8	1	248.0	60.4%	3	K.KALPADAPKPGKFR.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.547.547.2	53.2908	0.392719	1497.93	1496.8	1	179.0	72.0%	2	K.KALPADAPKPGKFR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.736.736.2	40.1884	0.223582	1368.29	1368.62	1	98.0	65.2%	2	K.ALPADAPKPGKFR.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.564.564.1	49.2033	0.475003	1655.56	1656.7	1	229.0	67.9%	1	R.LANGDAAAEAPAAEQEGA.-	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.655.655.2	60.4215	0.434685	1656.53	1656.7	1	240.0	73.3%	1	R.LANGDAAAEAPAAEQEGA.-	2

RPA3236

87.1%

132

14610

9.6

rpsH 30S ribosomal protein S8 3652588:3652986 reverse MW:14609

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.766.766.1	38.4234	0.303607	1354.8	1355.49	1	169.0	73.7%	2	M.STHDPISDLITR.I	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1022.1022.2	57.5512	0.333256	1355.67	1355.49	1	170.0	85.7%	3	M.STHDPISDLITR.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.873.873.3	43.006	0.179721	1355.87	1355.49	1	214.0	57.1%	1	M.STHDPISDLITR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.259.259.2	50.4358	0.313674	1106.57	1106.27	1	234.0	70.0%	1	R.SKSKVSTPGSK.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1369.1369.3	65.7833	0.354538	1561.76	1561.82	1	115.0	79.5%	2	R.ANVLDVLKAEGYIR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1159.1159.2	67.0013	0.356383	1562.05	1561.82	1	227.0	76.0%	2	R.ANVLDVLKAEGYIR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1109.1109.3	60.3413	0.321513	2715.65	2717.06	1	239.0	62.5%	3	R.ANVLDVLKAEGYIRGYATVEHPSGR.S	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.345.345.2	43.3697	0.332808	1173.77	1174.26	1	0.0	71.4%	2	R.GYATVEHPSGR.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1162.1162.2	37.8219	0.167168	2565.95	2565.88	1	192.0	55.6%	1	R.SELEIELKYFDGEPVIREIER.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.786.786.2	58.1641	0.34865	1147.09	1147.36	1	235.0	89.5%	1	R.VYASVKNLPR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.931.931.2	33.252	0.100358	2528.91	2527.97	1	0.0	51.6%	1	R.VYASVKNLPRVNNGLGISVLSTPK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.992.992.2	47.0403	0.191085	1879.75	1880.2	1	140.0	65.5%	1	K.NLPRVNNGLGISVLSTPK.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1170.1170.3	50.5942	0.246864	1880.21	1880.2	1	217.0	64.9%	2	K.NLPRVNNGLGISVLSTPK.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.942.942.1	42.1381	0.33792	1398.69	1399.63	1	32.0	85.7%	2	R.VNNGLGISVLSTPK.G	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.943.943.2	62.0303	0.363005	1400.25	1399.63	1	196.0	76.9%	3	R.VNNGLGISVLSTPK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.885.885.2	36.5223	0.217834	2367.39	2366.7	1	11.0	51.6%	1	R.VNNGLGISVLSTPKGIMADHDAR.D	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.289.289.2	36.6343	0.115056	988.352	986.096	1	220.0	64.7%	1	K.GIMADHDAR.D	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1264.1264.2	61.6289	0.412182	2334.41	2335.6	1	33.0	68.8%	3	K.GIMADHDARDANVGGEVLFTVF.-	2

RPA0433

86.5%

10143

10.3

rpsO ribosomal protein S15 478426:478695 reverse MW:10142

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.520.520.3	45.7677	0.280198	1834.25	1834.12	1	165.0	60.7%	2	M.SITAERKAEVIKTSATK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.519.519.2	57.718	0.299562	1835.05	1834.12	1	98.0	66.7%	2	M.SITAERKAEVIKTSATK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.255.255.2	57.2779	0.328085	1176.33	1176.4	1	103.0	80.0%	2	R.KAEVIKTSATK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.838.838.3	85.0883	0.528742	2886.71	2887.26	1	191.0	76.5%	2	R.KAEVIKTSATKAGDTGSPEVQVAILSER.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.744.744.2	88.5945	0.506273	2887.51	2887.26	1	147.0	90.9%	3	R.KAEVIKTSATKAGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.796.796.2	71.7918	0.45278	2758.89	2759.09	1	197.0	82.4%	1	K.AEVIKTSATKAGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.785.785.2	83.696	0.531521	2217.61	2218.43	1	204.0	87.5%	1	K.TSATKAGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.966.966.2	65.0992	0.464531	1729.35	1729.89	1	156.0	67.7%	2	K.AGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.665.665.1	35.9016	0.110602	1044.64	1045.23	1	208.0	73.3%	1	R.ITNLTAHFK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.801.801.2	54.3923	0.168645	1045.05	1045.23	1	202.0	82.4%	3	R.ITNLTAHFK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.386.386.2	72.4185	0.523836	2122.17	2122.35	1	172.0	79.3%	3	R.ITNLTAHFKTHTKDNHSR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.384.384.3	54.3394	0.338951	2123.45	2122.35	1	243.0	63.8%	3	R.ITNLTAHFKTHTKDNHSR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.782.782.2	68.7666	0.348402	1579.61	1579.84	1	230.0	82.6%	1	R.SLLDYIKKKDEAR.Y	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.936.936.3	48.7403	0.303535	1580.42	1579.84	1	224.0	71.8%	1	R.SLLDYIKKKDEAR.Y	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.357.357.2	33.247	0.117108	1543.81	1541.84	1	138.0	63.6%	1	R.YKALLEKHNIRR.-	2

RPA2767

86.4%

154

17173

10.2

rplM, L13 ribosomal protein L13 3139021:3139485 forward MW:17173

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.536.536.2	67.6406	0.439439	1438.85	1438.73	1	186.0	87.5%	3	-.MKTFSAKPAEVTK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.651.651.3	38.4773	0.160599	1439.06	1438.73	1	224.0	66.7%	1	-.MKTFSAKPAEVTK.K	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.355.355.2	57.7787	0.338273	1566.75	1566.91	1	152.0	75.0%	1	-.MKTFSAKPAEVTKK.W	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.406.406.3	55.9742	0.36418	1567.07	1566.91	1	215.0	68.8%	2	-.MKTFSAKPAEVTKK.W	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1074.1074.3	81.0458	0.463951	2947.07	2947.56	1	255.0	80.0%	3	-.MKTFSAKPAEVTKKWVIIDATGLVVGR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.980.980.2	81.9073	0.50695	2948.17	2947.56	1	201.0	82.8%	2	-.MKTFSAKPAEVTKKWVIIDATGLVVGR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1444.1444.2	77.5105	0.48726	1397.97	1399.68	1	249.0	87.5%	2	K.WVIIDATGLVVGR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.778.778.2	50.808	0.26265	874.912	875.123	1	84.0	86.7%	3	R.LATLVAMR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.882.882.3	61.3542	0.484951	2862.95	2863.31	1	63.0	69.3%	1	R.LRGKHLPTYTPHVDCGDNVIIINASK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.802.802.2	67.1788	0.497788	2592.43	2593.97	1	220.0	80.0%	2	R.GKHLPTYTPHVDCGDNVIIINASK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.904.904.3	67.6642	0.490542	2593.4	2593.97	1	173.0	67.6%	1	R.GKHLPTYTPHVDCGDNVIIINASK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.867.867.2	37.3967	0.164945	2409.61	2408.74	1	8.0	61.3%	1	K.HLPTYTPHVDCGDNVIIINASK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.504.504.2	40.7898	0.245196	2419.53	2419.75	1	4.0	62.1%	1	R.KRDNKVYYHHTGFIGGIKER.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.575.575.3	53.9126	0.360678	2420.66	2419.75	1	182.0	67.7%	3	R.KRDNKVYYHHTGFIGGIKER.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.673.673.3	50.5522	0.27603	2135.39	2135.39	1	72.0	64.8%	1	R.DNKVYYHHTGFIGGIKER.S	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.960.960.3	46.8797	0.277911	2113.43	2113.47	1	210.0	58.6%	2	K.AILEGRFPERVVEKAIER.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.944.944.2	36.1346	0.105193	2113.49	2113.47	1	0.0	50.0%	1	K.AILEGRFPERVVEKAIER.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.731.731.2	33.8463	0.170722	997.852	997.253	1	2.0	80.0%	1	R.MIPRGPLGR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.632.632.2	61.9171	0.358717	2687.35	2688.98	1	125.0	75.9%	1	R.VYPGAEHPHEAQQPEKLDIGAMNR.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.590.590.2	60.0196	0.409988	2816.43	2817.16	1	161.0	82.1%	2	R.VYPGAEHPHEAQQPEKLDIGAMNRK.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.679.679.3	51.743	0.403198	2818.82	2817.16	1	44.0	62.9%	2	R.VYPGAEHPHEAQQPEKLDIGAMNRK.N	3

RPA3240

86.1%

122

13489

10.9

rplN 50S ribosomal protein L14 3654215:3654583 reverse MW:13489

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.895.895.2	86.1377	0.484563	1864.47	1865.1	1	254.0	92.3%	2	-.MIQMQTNLDVADNSGAR.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.867.867.2	40.8222	0.198069	1136.25	1135.48	1	176.0	65.0%	1	R.VMCIKVIGGSK.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1450.1450.3	72.6245	0.372662	2088.26	2087.47	1	253.0	67.7%	1	R.RYATVGDVIVVSIKEAIPR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1327.1327.2	73.7052	0.521358	1931.29	1931.28	1	240.0	78.1%	4	R.YATVGDVIVVSIKEAIPR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.449.449.2	81.5715	0.455787	1614.61	1615.04	1	209.0	95.8%	3	R.GKVKKGDVMKAVVVR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.527.527.3	63.712	0.368555	1615.58	1615.04	1	247.0	77.8%	3	R.GKVKKGDVMKAVVVR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.834.834.2	34.4749	0.192868	2971.45	2971.31	1	128.0	51.7%	1	R.RADGSVIRFDRNAAVLINNQSEPIGTR.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.681.681.1	45.9479	0.359984	1697.34	1697.89	1	20.0	78.3%	2	R.NAAVLINNQSEPIGTR.I	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.781.781.2	77.1631	0.5075	1698.39	1697.89	1	230.0	82.8%	3	R.NAAVLINNQSEPIGTR.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.979.979.2	42.105	0.224311	2464.29	2464.83	1	8.0	59.4%	1	R.NAAVLINNQSEPIGTRIFGPVPR.E	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.822.822.2	35.7538	0.164198	786.012	785.965	1	202.0	76.9%	1	R.IFGPVPR.E	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1379.1379.2	41.8283	0.221563	955.172	955.183	1	236.0	81.2%	1	K.IISLAPEVL.-	2

RPA3231

83.2%

161

16837

10.4

rplO 50S ribosomal protein L15 3650181:3650666 reverse MW:16837

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.699.699.1	45.8773	0.317573	1419.79	1420.63	1	164.0	85.0%	2	-.MKLSEIADNVGSR.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.799.799.2	82.4998	0.350689	1420.77	1420.63	1	249.0	95.5%	2	-.MKLSEIADNVGSR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.951.951.3	55.864	0.312212	1421.03	1420.63	1	203.0	74.4%	1	-.MKLSEIADNVGSR.K	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.757.757.3	50.886	0.326151	1833.8	1833.17	1	221.0	62.3%	1	-.MKLSEIADNVGSRKKR.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.619.619.2	39.5146	0.223335	1162.37	1161.26	1	24.0	61.9%	1	K.LSEIADNVGSR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.245.245.2	36.7322	0.226921	1145.91	1146.25	1	1.0	70.0%	1	K.TGGRGGKGQTAR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.846.846.3	57.2592	0.372609	1472.39	1470.74	1	203.0	61.4%	3	R.IKGFEGGQMPLHR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.699.699.2	65.072	0.458529	1472.53	1470.74	1	230.0	83.3%	2	R.IKGFEGGQMPLHR.R	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1431.1431.2	39.6484	0.233394	2996.53	2997.34	1	8.0	67.9%	1	K.RGFNNIFALEFAEVNLDRLQEAVDSK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1539.1539.3	63.5026	0.433773	2998.43	2997.34	1	185.0	69.9%	3	K.RGFNNIFALEFAEVNLDRLQEAVDSK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1228.1228.3	51.593	0.165315	1939.04	1939.26	1	127.0	60.7%	3	K.AIDAGKVVDAAALVEAGVLR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1271.1271.2	99.9996	0.411136	1940.13	1939.26	1	241.0	88.6%	3	K.AIDAGKVVDAAALVEAGVLR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1230.1230.3	71.291	0.413711	2096.39	2095.45	1	173.0	73.0%	5	K.AIDAGKVVDAAALVEAGVLRR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.594.594.2	42.4363	0.255762	1058.55	1058.27	1	172.0	66.7%	1	R.LLGRGELTAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.566.566.1	39.2179	0.285701	1081.66	1082.25	1	184.0	86.7%	1	K.LNIEVHGATK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.580.580.2	43.2926	0.221363	1083.19	1082.25	1	241.0	77.8%	1	K.LNIEVHGATK.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.342.342.1	40.8411	0.170076	788.46	788.92	1	88.0	92.3%	1	K.SAIAAVEK.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.850.850.2	55.6279	0.353263	1289.59	1288.49	1	248.0	73.9%	2	K.SAIAAVEKAGGSVK.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.865.865.2	60.7037	0.414209	2469.09	2468.81	1	14.0	69.7%	1	K.SAIAAVEKAGGSVKILAPKAEEGEAA.-	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.682.682.2	54.9677	0.38769	1698.39	1698.91	1	216.0	58.1%	1	K.AGGSVKILAPKAEEGEAA.-	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.509.509.1	38.3408	0.138497	1198.61	1199.35	1	170.0	82.4%	1	K.ILAPKAEEGEAA.-	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.592.592.2	53.5467	0.271105	1199.43	1199.35	1	216.0	85.7%	3	K.ILAPKAEEGEAA.-	2

RPA3241

82.9%

9685

10.5

rpsQ 30S ribosomal protein S17 3654647:3654895 reverse MW:9685

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.485.485.2	46.739	0.107001	1427.71	1427.69	1	168.0	66.7%	1	M.PKRTLQGVVVSDK.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.373.373.2	50.1488	0.284952	1755.77	1755.07	1	132.0	67.9%	2	M.PKRTLQGVVVSDKQAK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.434.434.3	62.9136	0.420113	1755.89	1755.07	1	252.0	75.9%	2	M.PKRTLQGVVVSDKQAK.T	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.685.685.2	60.1402	0.421108	1372.99	1373.59	1	240.0	83.3%	2	R.TLQGVVVSDKQAK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.349.349.2	39.3668	0.156883	1034.27	1034.25	1	138.0	73.3%	2	R.FTHPIYKK.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.759.759.3	68.1241	0.491155	3430.28	3430.78	1	27.0	72.7%	3	R.SKNYHAHDENNQFKPGDMVWIEESKPISK.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.767.767.3	63.7058	0.5051	3828.77	3828.3	1	231.0	67.5%	2	R.SKNYHAHDENNQFKPGDMVWIEESKPISKLKR.W	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.807.807.2	33.2609	0.242558	3214.19	3215.53	1	76.0	51.9%	1	K.NYHAHDENNQFKPGDMVWIEESKPISK.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.800.800.3	46.9374	0.343411	3612.98	3613.05	1	116.0	63.6%	1	K.NYHAHDENNQFKPGDMVWIEESKPISKLKR.W	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.549.549.2	42.9809	0.256961	1372.29	1372.61	1	198.0	66.7%	4	R.WTVVRGEPKKTA.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.541.541.3	40.365	0.162031	1373.06	1372.61	1	198.0	64.3%	1	R.WTVVRGEPKKTA.-	3

RPA0241

81.4%

129

14298

9.9

rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1189.1189.2	76.2076	0.461583	2194.41	2194.56	1	218.0	86.2%	5	-.MNLIQTLEKEQFDKLSAGK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1196.1196.3	59.1315	0.380986	2195.57	2194.56	1	172.0	64.9%	2	-.MNLIQTLEKEQFDKLSAGK.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1060.1060.2	66.7084	0.422001	1686.41	1686.95	1	112.0	82.8%	1	K.TIPEFGPGDTVIVNVK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.975.975.1	36.5798	0.279646	1686.56	1686.95	1	173.0	62.5%	1	K.TIPEFGPGDTVIVNVK.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.1132.1132.2	52.4911	0.273119	2355.39	2356.68	1	32.0	59.4%	1	K.TIPEFGPGDTVIVNVKVVEGER.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.917.917.2	64.0956	0.408847	1195.13	1195.38	1	223.0	81.0%	2	R.VQAYEGVCIGR.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.656.656.1	31.9987	0.275036	1223.88	1224.32	1	129.0	77.8%	1	R.SGGGINESFTVR.K	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.755.755.2	54.8813	0.283849	1224.15	1224.32	1	212.0	81.8%	2	R.SGGGINESFTVR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.777.777.2	54.7826	0.301986	1351.83	1352.49	1	206.0	73.9%	2	R.SGGGINESFTVRK.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.359.359.1	40.8572	0.160373	1137.68	1138.27	1	196.0	87.5%	1	R.KISYGEGVER.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.384.384.2	56.6312	0.292605	1138.37	1138.27	1	186.0	84.2%	3	R.KISYGEGVER.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.553.553.2	41.8555	0.192125	1009.81	1010.09	1	230.0	76.5%	1	K.ISYGEGVER.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1449.1449.3	46.1121	0.146404	2453.18	2451.89	1	106.0	60.3%	1	K.ISYGEGVERVFPLLSPMIDSIK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1280.1280.1	48.5824	0.224635	1459.78	1460.82	1	226.0	85.0%	2	R.VFPLLSPMIDSIK.V	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1389.1389.2	64.0007	0.410467	1460.59	1460.82	1	123.0	83.3%	3	R.VFPLLSPMIDSIK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1328.1328.2	65.0178	0.400593	1814.83	1815.27	1	97.0	72.4%	1	R.VFPLLSPMIDSIKVVR.R	2
	Prep4_Anaer_Gradient_1st_052703_PPM.771.771.2	44.188	0.200763	927.312	927.135	1	205.0	84.6%	1	R.AKLYYLR.N	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.223.223.1	40.2411	0.119912	1015.63	1016.19	1	172.0	100.0%	1	R.IVEKKQDR.T	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.222.222.2	51.0167	0.243099	1016.23	1016.19	1	234.0	86.7%	2	R.IVEKKQDR.T	2

RPA3239

79.8%

104

11130

10.4

rplX 50S ribosomal protein L24 3653901:3654215 reverse MW:11130

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.412.412.2	52.0144	0.364611	1711.39	1712.09	1	192.0	67.9%	2	M.AAKIRKGDKVIVLSGR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.481.481.3	48.9519	0.255631	1712.3	1712.09	1	191.0	66.7%	1	M.AAKIRKGDKVIVLSGR.D	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.414.414.2	41.3718	0.138128	1441.19	1441.76	1	194.0	66.7%	1	K.IRKGDKVIVLSGR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.341.341.3	38.2073	0.128389	1629.02	1628.92	1	190.0	64.6%	1	R.KGDKVIVLSGRDKGR.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.302.302.2	40.2446	0.15868	1629.53	1628.92	1	136.0	61.5%	1	R.KGDKVIVLSGRDKGR.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.579.579.1	37.8935	0.207017	1404.57	1405.55	1	97.0	83.3%	1	R.TGEVFEVRPDAGK.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.666.666.2	59.1228	0.334752	1405.33	1405.55	1	245.0	73.9%	1	R.TGEVFEVRPDAGK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.819.819.2	43.5597	0.208133	1844.17	1845.11	1	192.0	70.4%	1	R.TGEVFEVRPDAGKALVR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.532.532.3	55.1042	0.374808	2450.87	2450.81	1	240.0	62.9%	3	R.GINVVKRHQKQTQTQEGGIISK.E	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.479.479.2	58.4779	0.447106	2451.69	2450.81	1	192.0	76.7%	2	R.GINVVKRHQKQTQTQEGGIISK.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.290.290.2	41.1588	0.250598	1684.15	1683.86	1	20.0	59.3%	1	R.HQKQTQTQEGGIISK.E	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.904.904.2	49.7477	0.281854	2526.07	2526.94	1	34.0	62.5%	3	K.EAPIDLSNIAIVGKDGKPTRVGFK.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1014.1014.3	37.4868	0.128416	2526.71	2526.94	1	102.0	55.6%	1	K.EAPIDLSNIAIVGKDGKPTRVGFK.I	3

RPA1589

78.5%

205

23559

10.1

rpsD 30S ribosomal protein S4 1768213:1768830 reverse MW:23559

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1061.1061.2	51.2613	0.244929	1035.23	1035.19	1	120.0	82.4%	3	K.LSDFGVQLR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.577.577.2	74.8227	0.509994	1771.75	1770.04	1	162.0	95.8%	2	R.AKQKLKGYYANISER.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.636.636.1	29.4616	0.100548	1334.99	1335.51	1	34.0	75.0%	1	R.QFHAIYVEATR.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.872.872.2	47.1654	0.273529	1335.17	1335.51	1	25.0	77.8%	1	R.QFHAIYVEATR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1073.1073.2	80.2985	0.452025	1613.97	1614.84	1	222.0	85.7%	2	R.LKGDSGENLIGLLER.R	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.989.989.1	42.9364	0.333677	1615.02	1614.84	1	140.0	69.6%	2	R.LKGDSGENLIGLLER.R	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.571.571.1	29.4702	0.148598	991.76	992.167	1	106.0	84.6%	1	R.RLDAVVYR.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.694.694.2	56.22	0.300229	992.932	992.167	1	231.0	87.5%	3	R.RLDAVVYR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.555.555.2	47.1031	0.295813	1191.41	1191.42	1	48.0	83.3%	1	R.RLDAVVYRAK.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.961.961.2	59.7175	0.453589	1229.25	1229.49	1	225.0	85.0%	3	R.AKFVSTMFAAR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.994.994.2	50.5806	0.402247	1030.35	1030.24	1	232.0	88.2%	1	K.FVSTMFAAR.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.402.402.2	39.9539	0.164862	1492.13	1492.72	1	0.0	73.9%	2	R.QFINHGHIKVNGK.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.782.782.3	41.9091	0.275553	1232.81	1232.47	1	211.0	72.7%	1	K.RVNIPSYKVR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1240.1240.2	82.0071	0.516924	2831.69	2831.24	1	236.0	89.7%	1	R.VGDVIEVKEASKQLAFVLEASQLAER.D	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1332.1332.3	42.3579	0.248837	4258.34	4256.76	1	139.0	61.0%	1	R.VGDVIEVKEASKQLAFVLEASQLAERDVPDYIEVDHNK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1300.1300.3	45.5525	0.280542	4687.58	4688.31	1	104.0	61.7%	1	R.VGDVIEVKEASKQLAFVLEASQLAERDVPDYIEVDHNKMTAK.F	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.762.762.2	46.2109	0.246924	1875.79	1876.1	1	20.0	69.2%	1	R.DVPDYIEVDHNKMTAK.F	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1372.1372.2	40.9446	0.208831	3134.43	3134.67	1	164.0	64.3%	1	K.FARIPALSDVPFAVQMEPHLIVEFYSR.-	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1482.1482.3	74.175	0.433061	3135.92	3134.67	1	182.0	78.4%	2	K.FARIPALSDVPFAVQMEPHLIVEFYSR.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1427.1427.3	64.1604	0.510893	2759.99	2760.23	1	154.0	72.5%	3	R.IPALSDVPFAVQMEPHLIVEFYSR.-	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1380.1380.2	77.9125	0.503145	2760.63	2760.23	1	178.0	86.2%	3	R.IPALSDVPFAVQMEPHLIVEFYSR.-	2

RPA3233

78.5%

191

20655

11.0

rpsE ribosomal protein S5 3650932:3651507 reverse MW:20654

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.810.810.3	43.9775	0.16437	2514.95	2515.75	1	168.0	59.7%	1	R.SREREERDSEFVDKLVHINR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.711.711.2	41.7311	0.247324	2515.83	2515.75	1	164.0	60.7%	1	R.SREREERDSEFVDKLVHINR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.706.706.2	35.2869	0.184576	2813.21	2814.14	1	145.0	53.8%	1	R.SREREERDSEFVDKLVHINRVAK.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1112.1112.3	46.6289	0.361482	1573.94	1572.76	1	111.0	63.6%	1	R.DSEFVDKLVHINR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1392.1392.2	39.8255	0.287838	1352.29	1351.59	1	116.0	58.3%	1	R.FGFAALVVVGDQK.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1084.1084.2	58.8677	0.379672	1565.03	1564.83	1	242.0	70.4%	2	R.FGFAALVVVGDQKGR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1252.1252.3	53.9769	0.371405	1565.06	1564.83	1	230.0	70.0%	2	R.FGFAALVVVGDQKGR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.264.264.1	31.6669	0.124158	701.49	701.803	1	180.0	81.8%	1	R.VGFGHGK.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.622.622.2	38.9106	0.188604	1685.39	1685.92	1	17.0	58.3%	1	R.EVPEAIRKATESAKR.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.271.271.1	49.8933	0.307713	1020.67	1020.14	1	25.0	100.0%	1	R.TLHHDIAGR.H	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.306.306.2	42.4958	0.216534	1021.15	1020.14	1	106.0	76.5%	2	R.TLHHDIAGR.H	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.260.260.2	46.9835	0.328973	1500.05	1498.65	1	194.0	73.1%	1	R.TLHHDIAGRHGAGR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.779.779.2	67.0182	0.447064	1340.49	1340.59	1	46.0	84.0%	3	R.AAPAGTGIIAGGPMR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1616.1616.3	53.8158	0.361167	2754.47	2755.25	1	227.0	56.4%	3	R.AAPAGTGIIAGGPMRAVFETLGIADVVAK.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1514.1514.2	41.3867	0.256892	2754.83	2755.25	1	90.0	60.6%	1	R.AAPAGTGIIAGGPMRAVFETLGIADVVAK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1659.1659.3	52.6649	0.451287	4047.44	4047.69	1	219.0	59.8%	2	R.AAPAGTGIIAGGPMRAVFETLGIADVVAKSVGSSNPYNMVR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1127.1127.1	49.8741	0.389613	1432.62	1433.69	1	113.0	81.8%	5	R.AVFETLGIADVVAK.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1165.1165.2	76.2507	0.447011	1433.95	1433.69	1	183.0	91.3%	3	R.AVFETLGIADVVAK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1279.1279.2	75.3373	0.524508	2725.21	2726.13	1	167.0	81.8%	2	R.AVFETLGIADVVAKSVGSSNPYNMVR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.730.730.1	34.0776	0.208685	1310.65	1311.46	1	66.0	72.2%	1	K.SVGSSNPYNMVR.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.864.864.2	67.9728	0.454469	1310.99	1311.46	1	169.0	100.0%	3	K.SVGSSNPYNMVR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.691.691.1	38.5345	0.157521	1470.95	1471.66	1	208.0	80.0%	1	R.ATFDALKHLDSPR.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.786.786.2	63.4844	0.313008	1471.49	1471.66	1	241.0	78.3%	2	R.ATFDALKHLDSPR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.442.442.2	61.0478	0.405636	1286.73	1286.52	1	41.0	80.0%	1	R.RNIKVSTLQAR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.578.578.2	44.7252	0.108067	1130.61	1130.33	1	209.0	73.7%	1	R.NIKVSTLQAR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.480.480.1	34.8176	0.110726	1101.61	1102.19	1	180.0	66.7%	2	R.RVGGDAEVVAE.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.570.570.2	39.0047	0.116453	1101.91	1102.19	1	197.0	65.0%	1	R.RVGGDAEVVAE.-	2

RPA2953

77.7%

103

11220

10.7

hupA possible DNA-binding protein hu-alpha (NS2) (HU-2) 3338656:3338967 forward MW:11220

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1231.1231.3	43.0326	0.346412	3935.39	3933.52	1	79.0	44.4%	1	K.SATPATVTLKHLAAALAEEHELSKKQTEAILGDMVTR.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.926.926.2	92.0329	0.558946	2963.13	2963.39	1	254.0	96.4%	3	K.HLAAALAEEHELSKKQTEAILGDMVTR.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1034.1034.3	80.9534	0.529673	2963.87	2963.39	1	155.0	76.0%	2	K.HLAAALAEEHELSKKQTEAILGDMVTR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1315.1315.3	57.4584	0.149218	1338.02	1337.7	1	231.0	81.6%	2	R.IRIVGLGILQVR.K	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1295.1295.2	66.2273	0.282538	1067.93	1068.35	1	250.0	89.5%	2	R.IVGLGILQVR.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.571.571.1	40.6797	0.244699	1543.13	1543.79	1	11.0	72.7%	1	R.MGRNPATGEQIQIK.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.796.796.3	43.2249	0.170952	1544.0	1543.79	1	71.0	62.5%	1	R.MGRNPATGEQIQIK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.654.654.2	65.3185	0.340724	1544.65	1543.79	1	222.0	72.0%	2	R.MGRNPATGEQIQIK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.560.560.2	57.4761	0.339684	1957.77	1958.29	1	154.0	59.4%	1	R.MGRNPATGEQIQIKASKK.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.671.671.3	66.6526	0.373091	1958.0	1958.29	1	190.0	67.2%	1	R.MGRNPATGEQIQIKASKK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.600.600.2	37.2477	0.143034	2433.65	2431.87	1	1.0	58.1%	1	R.MGRNPATGEQIQIKASKKVAFR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.448.448.1	41.6356	0.158902	972.45	973.158	1	156.0	92.3%	1	R.AAKELKEAI.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.534.534.2	47.9442	0.219835	973.212	973.158	1	115.0	86.7%	2	R.AAKELKEAI.-	2

RPA3251

76.5%

102

11669

10.2

rpsJ 30S ribosomal protein S10 3659530:3659838 reverse MW:11668

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.572.572.3	38.9332	0.238963	1157.0	1156.38	1	240.0	54.5%	2	R.IRLKAFDHR.I	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.288.288.2	44.3579	0.248278	889.972	887.03	1	224.0	84.6%	1	R.LKAFDHR.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.702.702.3	51.2882	0.264696	1718.75	1717.96	1	227.0	68.0%	2	R.ILDTSTREIVNTAKR.T	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.955.955.3	44.8233	0.256976	1836.44	1834.17	1	217.0	63.5%	1	R.TGAQVRGPIPLPTRIEK.F	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.410.410.2	40.534	0.238972	1801.59	1799.08	1	0.0	56.0%	1	R.IEKFTVNRSPHVDKK.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.437.437.2	48.8965	0.336789	1083.15	1083.21	1	204.0	80.0%	1	K.SREQFEMR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1232.1232.2	78.285	0.458921	1869.61	1870.22	1	201.0	87.1%	3	R.LLDIVDPTPQTVDALMK.L	2

RPA3272

75.1%

229

24010

9.6

rplA 50S ribosomal protein L1 3690510:3691199 reverse MW:24010

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1006.1006.3	39.2843	0.244978	1848.02	1848.11	1	64.0	55.6%	1	R.EGIDRTKLYPLDEAVK.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1030.1030.2	37.0476	0.141888	2472.87	2473.88	1	20.0	60.7%	1	R.EGIDRTKLYPLDEAVKLVKER.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1027.1027.3	58.1493	0.387766	2476.31	2473.88	1	102.0	73.0%	1	R.EGIDRTKLYPLDEAVKLVKER.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1009.1009.2	66.6025	0.457893	1903.25	1903.27	1	136.0	79.3%	2	R.TKLYPLDEAVKLVKER.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1189.1189.3	64.1004	0.348432	1903.4	1903.27	1	229.0	73.6%	2	R.TKLYPLDEAVKLVKER.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.252.252.2	44.4998	0.256307	856.992	856.981	1	232.0	85.7%	1	R.HADQMVR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.874.874.2	53.5452	0.296023	1101.13	1101.32	1	212.0	94.1%	3	R.GVVMLPNGTGR.T	2
	Prep4_Anaer_Gradient_1st_052703_PPM.530.530.2	36.2102	0.120742	648.852	648.783	1	226.0	81.8%	1	R.VGVFAR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1182.1182.3	70.6481	0.470542	3330.26	3330.59	1	251.0	73.9%	4	R.GAKADEAKAAGADVVGAEDLVEQVQAGNINFDR.C	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1111.1111.2	95.8903	0.622436	3331.31	3330.59	1	166.0	96.8%	3	R.GAKADEAKAAGADVVGAEDLVEQVQAGNINFDR.C	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1250.1250.3	74.9788	0.509591	2559.68	2559.75	1	255.0	71.6%	2	K.AAGADVVGAEDLVEQVQAGNINFDR.C	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1190.1190.2	94.5709	0.525751	2560.47	2559.75	1	231.0	96.9%	5	K.AAGADVVGAEDLVEQVQAGNINFDR.C	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.337.337.2	48.809	0.237003	840.232	840.057	1	248.0	86.7%	2	R.LGKVLGPR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.375.375.1	40.3125	0.300607	774.42	774.982	1	150.0	100.0%	3	R.GMMPNPK.I	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1014.1014.2	63.0365	0.410941	1261.93	1262.51	1	164.0	87.0%	2	K.IGTVTMDVAGAVK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.730.730.1	32.1765	0.123068	1519.25	1518.82	1	200.0	58.3%	1	K.IGTVTMDVAGAVKGAK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.979.979.3	48.3629	0.244472	1521.5	1518.82	1	118.0	64.0%	1	K.IGTVTMDVAGAVKGAK.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1041.1041.2	76.8176	0.487038	2344.59	2345.7	1	244.0	82.4%	2	K.AGIIQAGVGKASFDADKLVENIK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1160.1160.3	74.8356	0.506796	2345.84	2345.7	1	123.0	73.5%	3	K.AGIIQAGVGKASFDADKLVENIK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1276.1276.2	82.8037	0.508783	2231.97	2233.53	1	242.0	84.4%	2	K.ASFDADKLVENIKALADAVNK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1333.1333.3	66.5118	0.448429	2233.55	2233.53	1	239.0	64.7%	1	K.ASFDADKLVENIKALADAVNK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1235.1235.3	60.1965	0.440911	3592.19	3592.09	1	142.0	70.5%	3	K.ASFDADKLVENIKALADAVNKAKPSGAKGTYIQR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.650.650.2	48.3956	0.349918	2159.75	2160.48	1	168.0	58.8%	1	K.ALADAVNKAKPSGAKGTYIQR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.649.649.3	60.3628	0.451616	2161.28	2160.48	1	252.0	68.8%	1	K.ALADAVNKAKPSGAKGTYIQR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.317.317.2	43.3962	0.309059	1376.73	1377.59	1	44.0	65.2%	1	K.AKPSGAKGTYIQR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.529.529.1	40.3333	0.22417	1132.6	1133.35	1	152.0	72.2%	1	R.VAVSSTMGPGVK.V	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.754.754.2	70.0841	0.496491	1853.33	1853.15	1	188.0	80.6%	3	R.VAVSSTMGPGVKVEPGTVH.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.760.760.1	45.1504	0.410477	1853.37	1853.15	1	132.0	67.9%	1	R.VAVSSTMGPGVKVEPGTVH.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.899.899.3	62.8214	0.397126	1854.08	1853.15	1	231.0	73.3%	3	R.VAVSSTMGPGVKVEPGTVH.-	3

RPA4356

73.9%

230

23970

9.6

ctc, rplY, L25 putative 50S ribosomal protein L25 4906874:4907566 reverse MW:23969

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.745.745.3	46.2361	0.146916	1412.84	1414.69	1	223.0	71.4%	2	M.TSVLELKATARPK.S	2 3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.539.539.1	38.0485	0.219996	1414.71	1414.69	1	17.0	77.8%	1	M.TSVLELKATARPK.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.615.615.2	62.7362	0.302086	1415.05	1414.69	1	232.0	85.7%	3	M.TSVLELKATARPK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.492.492.2	51.2566	0.331198	2041.99	2042.39	1	4.0	72.7%	2	M.TSVLELKATARPKSGKGAAR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.600.600.3	39.753	0.146809	2042.0	2042.39	1	246.0	58.3%	2	M.TSVLELKATARPKSGKGAAR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.959.959.3	48.2164	0.102689	2982.83	2981.38	1	212.0	66.7%	1	R.RAGRVPGVIYGDNQSPLPISVEEKELR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.895.895.2	67.5235	0.47413	2427.13	2426.73	1	204.0	78.1%	1	R.AGRVPGVIYGDNQSPLPISVEEK.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1007.1007.2	60.9802	0.366089	2824.45	2825.2	1	193.0	78.6%	2	R.AGRVPGVIYGDNQSPLPISVEEKELR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1003.1003.3	66.8002	0.465879	2826.98	2825.2	1	190.0	71.8%	1	R.AGRVPGVIYGDNQSPLPISVEEKELR.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1039.1039.3	52.1036	0.327033	3094.19	3094.54	1	192.0	72.6%	1	R.AGRVPGVIYGDNQSPLPISVEEKELRLR.I	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1223.1223.2	57.8591	0.306159	1582.09	1582.88	1	143.0	65.4%	1	R.FLTTVFDVVLDGKK.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1434.1434.3	40.7252	0.172274	1583.0	1582.88	1	142.0	51.1%	1	R.FLTTVFDVVLDGKK.H	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1259.1259.3	44.8182	0.194733	1876.16	1876.21	1	212.0	66.7%	2	R.FLTTVFDVVLDGKKHR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1094.1094.2	63.5144	0.427509	1876.75	1876.21	1	242.0	77.8%	2	R.FLTTVFDVVLDGKKHR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1059.1059.2	45.6196	0.284483	2720.49	2721.14	1	176.0	63.0%	2	R.VIPRDYHLDPVRDFPIHVDFLR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1139.1139.3	41.7512	0.233361	2721.08	2721.14	1	208.0	61.5%	2	R.VIPRDYHLDPVRDFPIHVDFLR.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1187.1187.3	68.4727	0.504159	2256.14	2255.54	1	238.0	69.1%	2	R.DYHLDPVRDFPIHVDFLR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1117.1117.2	51.4776	0.241157	2256.45	2255.54	1	48.0	76.0%	3	R.DYHLDPVRDFPIHVDFLR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.400.400.2	43.1952	0.178059	759.612	758.897	1	250.0	81.2%	1	R.LGAGATIR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.953.953.2	43.5192	0.193402	1744.69	1744.13	1	57.0	53.3%	1	R.VSVPLHLKGLEVAPGVK.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1129.1129.3	48.0681	0.311895	1745.09	1744.13	1	143.0	62.3%	1	R.VSVPLHLKGLEVAPGVK.R	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.885.885.2	67.3828	0.433387	1899.63	1900.32	1	167.0	71.0%	2	R.VSVPLHLKGLEVAPGVKR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1051.1051.3	48.5821	0.245947	1900.37	1900.32	1	194.0	60.7%	1	R.VSVPLHLKGLEVAPGVKR.G	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.592.592.2	38.3097	0.187569	1027.51	1026.22	1	161.0	73.7%	1	K.GLEVAPGVKR.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.905.905.2	39.2922	0.157288	2972.11	2973.27	1	130.0	56.2%	1	K.SVSRDDVTLVTIVPPSGYNEDKAAAGAAPA.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.862.862.3	37.5471	0.375811	4348.28	4347.88	1	231.0	34.7%	1	K.SVSRDDVTLVTIVPPSGYNEDKAAAGAAPAAAAAPAAAAKAPAAAAK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.245.245.1	54.736	0.233621	839.68	838.983	1	245.0	93.8%	1	K.APAAAAPAAK.K	1

RPA2922

73.4%

331

36044

6.7

rpsB 30S ribosomal protein S2 3302284:3303279 reverse MW:36044

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.862.862.2	38.0496	0.201529	967.052	967.133	1	90.0	73.3%	1	M.SLPEFSMR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.657.657.2	47.3868	0.315744	1717.31	1716.9	1	9.0	74.1%	1	R.QLLEAGVHFGHQSHR.W	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.743.743.3	38.4457	0.13621	2242.34	2242.51	1	84.0	67.3%	1	R.QLLEAGVHFGHQSHRWNPK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.641.641.2	40.8181	0.212854	2243.41	2242.51	1	1.0	64.3%	2	R.QLLEAGVHFGHQSHRWNPK.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1151.1151.2	62.9903	0.397836	1071.63	1072.27	1	247.0	88.2%	2	K.MADYIFGVR.N	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1201.1201.2	34.458	0.178957	3036.23	3037.56	1	80.0	55.2%	1	K.MADYIFGVRNNIHIVDLTQTVPLLHR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1305.1305.3	67.5582	0.472474	3038.48	3037.56	1	173.0	71.2%	3	K.MADYIFGVRNNIHIVDLTQTVPLLHR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1261.1261.3	66.2766	0.325789	1983.26	1984.31	1	150.0	75.4%	3	R.NNIHIVDLTQTVPLLHR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1069.1069.2	93.5422	0.562129	1984.83	1984.31	1	230.0	92.9%	2	R.NNIHIVDLTQTVPLLHR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.841.841.2	41.9633	0.213801	1117.29	1117.29	1	105.0	70.0%	1	R.ALQAISDTVAK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.604.604.1	42.9146	0.277258	1117.5	1117.29	1	69.0	82.4%	2	R.ALQAISDTVAK.G	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.688.688.2	72.4326	0.445175	1387.41	1387.58	1	159.0	87.0%	5	R.ALQAISDTVAKGGR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.569.569.2	37.332	0.179302	919.892	920.143	1	165.0	73.3%	1	R.VLFVGTKR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.761.761.3	40.8543	0.151534	2145.77	2145.47	1	87.0	57.1%	1	R.VLFVGTKRQAQDAVADAAKR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.299.299.2	46.3676	0.306123	1244.37	1244.35	1	151.0	65.2%	2	R.QAQDAVADAAKR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.552.552.2	47.2162	0.270138	1227.87	1228.35	1	116.0	68.4%	3	K.RSAQYFVNSR.W	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.964.964.1	39.516	0.318803	1175.71	1176.36	1	96.0	82.4%	3	R.WLGGTLTNWK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1244.1244.2	57.4902	0.380806	1176.25	1176.36	1	138.0	89.5%	3	R.WLGGTLTNWK.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.677.677.2	60.6488	0.416707	2418.93	2417.69	1	232.0	74.2%	1	R.LRHLEDVLSSADANAYTKKER.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.736.736.2	85.5341	0.568889	2147.95	2148.34	1	235.0	87.5%	1	R.HLEDVLSSADANAYTKKER.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1309.1309.3	70.8366	0.531519	3457.85	3458.96	1	71.0	71.6%	1	R.SLGGIKDMGGLPDLIFVIDTNKEDIAIQEAQR.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1139.1139.2	77.8927	0.495421	1625.95	1626.91	1	127.0	79.3%	3	R.LGIPVAAIVDTNCDPK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1021.1021.1	36.8357	0.234259	1626.14	1626.91	1	133.0	64.0%	1	R.LGIPVAAIVDTNCDPK.G	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1326.1326.3	52.0856	0.353614	3055.94	3056.47	1	218.0	62.8%	3	R.LGIPVAAIVDTNCDPKGITYLVPGNDDAGR.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1205.1205.2	58.8943	0.42424	3056.25	3056.47	1	168.0	72.4%	3	R.LGIPVAAIVDTNCDPKGITYLVPGNDDAGR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1469.1469.3	39.1185	0.176183	4246.31	4245.91	1	102.0	52.8%	1	R.LGIPVAAIVDTNCDPKGITYLVPGNDDAGRAIALYCDLVAR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.832.832.2	50.9517	0.334931	1447.79	1448.58	1	201.0	78.3%	2	K.GITYLVPGNDDAGR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.735.735.1	37.9671	0.248478	1448.81	1448.58	1	48.0	85.0%	1	K.GITYLVPGNDDAGR.A	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.1387.1387.2	40.6702	0.186478	2637.55	2638.02	1	144.0	56.2%	2	K.GITYLVPGNDDAGRAIALYCDLVAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1446.1446.3	54.2723	0.352253	2638.16	2638.02	1	178.0	65.8%	2	K.GITYLVPGNDDAGRAIALYCDLVAR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.598.598.2	38.5809	0.102781	831.132	830.96	1	232.0	73.3%	1	R.AVIDGISR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1202.1202.3	73.2459	0.520512	3504.83	3503.9	1	162.0	65.2%	2	R.AQGDVGIDIGAAAQPLREDLPAAQATTFQGLPGPR.G	3

RPA3255

73.2%

123

13875

11.5

rpsL 30S ribosomal protein S12 3663744:3664115 reverse MW:13875

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1059.1059.2	69.3072	0.480338	1237.85	1237.45	1	252.0	85.7%	3	M.PTINQLIANPR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.274.274.3	52.6424	0.309821	1509.14	1508.81	1	236.0	81.0%	2	R.KKVPALQQSPQKR.G	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.275.275.2	59.4487	0.369826	1509.55	1508.81	1	129.0	77.3%	2	R.KKVPALQQSPQKR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.305.305.2	36.102	0.185763	1380.27	1380.63	1	27.0	54.5%	1	K.KVPALQQSPQKR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.387.387.2	44.1729	0.244317	1576.65	1576.84	1	192.0	65.2%	3	R.VYTTTPKKPNSALR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1138.1138.3	60.1705	0.478203	3266.48	3266.75	1	204.0	65.8%	3	K.VRLTNGFEVIGYIPGEGHNLQEHSVVMIR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1152.1152.3	49.6662	0.391514	3010.58	3011.43	1	31.0	64.0%	3	R.LTNGFEVIGYIPGEGHNLQEHSVVMIR.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1079.1079.2	47.6762	0.355444	3011.55	3011.43	1	139.0	60.7%	3	R.LTNGFEVIGYIPGEGHNLQEHSVVMIR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1132.1132.3	39.5498	0.248439	3282.68	3281.72	1	195.0	52.5%	1	R.LTNGFEVIGYIPGEGHNLQEHSVVMIRGGR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.449.449.2	52.0261	0.313987	1186.87	1187.34	1	222.0	78.9%	3	R.GVLDTQGVKNR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.233.233.2	40.1536	0.185072	1035.37	1035.24	1	193.0	70.6%	1	R.SKYGAKRPK.-	2

RPA3234

72.5%

120

13037

10.6

rplR 50S ribosomal protein L18 3651568:3651930 reverse MW:13037

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.889.889.2	84.4951	0.55037	2749.93	2750.04	1	234.0	93.5%	3	R.SSKHIYAQVIDDAKGETLASASSLEK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1004.1004.3	71.2071	0.47243	2752.07	2750.04	1	178.0	63.6%	3	R.SSKHIYAQVIDDAKGETLASASSLEK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1116.1116.3	62.9228	0.538813	3137.72	3138.53	1	226.0	67.1%	1	R.SSKHIYAQVIDDAKGETLASASSLEKTMR.D	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.989.989.2	88.7831	0.523386	2447.89	2447.71	1	214.0	82.4%	3	K.HIYAQVIDDAKGETLASASSLEK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1007.1007.3	80.3731	0.507547	2450.06	2447.71	1	183.0	68.1%	3	K.HIYAQVIDDAKGETLASASSLEK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.405.405.2	76.6729	0.501799	1606.69	1606.76	1	239.0	92.0%	2	K.TMRDAGNTGANIDAAK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.916.916.3	54.4995	0.438938	2530.97	2530.87	1	114.0	67.5%	1	K.TMRDAGNTGANIDAAKAVGKLVAER.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.387.387.2	43.6305	0.16824	943.552	943.135	1	208.0	76.5%	2	K.AVGKLVAER.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.661.661.2	44.0898	0.374973	1476.21	1476.72	1	192.0	73.9%	1	R.AVEKGVKEVVFDR.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.694.694.2	35.975	0.166869	2380.89	2380.71	1	208.0	58.6%	2	R.AVEKGVKEVVFDRGGYLYHGR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.789.789.3	41.8038	0.140042	2381.0	2380.71	1	130.0	50.8%	1	R.AVEKGVKEVVFDRGGYLYHGR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.292.292.2	45.868	0.231041	915.892	915.081	1	177.0	76.5%	1	R.VKALADAAR.E	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.842.842.1	37.5971	0.248979	1535.62	1535.74	1	145.0	72.7%	1	R.VKALADAARESGLSF.-	1

RPA3254

71.8%

156

17688

10.3

rpsG 30S ribosomal protein S7 3663258:3663728 reverse MW:17688

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.750.750.2	46.1144	0.344305	2362.75	2363.77	1	193.0	64.3%	1	R.HAAEKREVLPDPKFGNIIVTK.F	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1004.1004.2	43.3862	0.201527	1671.93	1670.99	1	136.0	66.7%	1	R.EVLPDPKFGNIIVTK.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.875.875.2	55.7022	0.258302	891.972	892.086	1	249.0	81.2%	3	K.FGNIIVTK.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.815.815.2	51.6314	0.317241	1276.41	1276.56	1	216.0	80.0%	2	K.FMNSVMYAGKK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1494.1494.3	45.9294	0.366506	3070.01	3070.6	1	227.0	56.8%	2	K.FMNSVMYAGKKSVAESIVYGAFDLIEAK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1381.1381.2	56.9727	0.36644	3070.23	3070.6	1	37.0	63.3%	3	K.FMNSVMYAGKKSVAESIVYGAFDLIEAK.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1410.1410.3	71.8511	0.376949	1941.26	1941.23	1	255.0	65.0%	2	K.KSVAESIVYGAFDLIEAK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1480.1480.2	102.126	0.581179	1941.73	1941.23	1	226.0	96.7%	3	K.KSVAESIVYGAFDLIEAK.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1483.1483.1	56.4469	0.430911	1812.81	1813.06	1	172.0	87.5%	1	K.SVAESIVYGAFDLIEAK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1724.1724.3	78.9457	0.423077	1812.98	1813.06	1	187.0	74.1%	9	K.SVAESIVYGAFDLIEAK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1559.1559.2	68.1329	0.366365	1813.07	1813.06	1	204.0	77.8%	9	K.SVAESIVYGAFDLIEAK.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1462.1462.2	70.4867	0.45392	2583.07	2584.01	1	42.0	83.3%	7	K.TKQPPLGVFEQALDNVMPTIEVR.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1445.1445.3	46.1916	0.173633	2584.64	2584.01	1	198.0	60.3%	2	K.TKQPPLGVFEQALDNVMPTIEVR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1559.1559.2	57.3579	0.394511	2353.83	2354.73	1	37.0	66.7%	3	K.QPPLGVFEQALDNVMPTIEVR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1641.1641.3	40.8592	0.190789	2355.11	2354.73	1	178.0	62.5%	1	K.QPPLGVFEQALDNVMPTIEVR.S	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.831.831.3	40.7015	0.104271	1776.02	1775.02	1	172.0	62.5%	1	R.SRRVGGATYQVPVEVR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.742.742.3	48.86	0.313488	1530.95	1531.76	1	207.0	62.5%	2	R.RVGGATYQVPVEVR.S	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.739.739.2	57.3709	0.423563	1531.05	1531.76	1	148.0	76.9%	1	R.RVGGATYQVPVEVR.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.709.709.1	43.9208	0.341626	1374.74	1375.57	1	70.0	80.0%	1	R.VGGATYQVPVEVR.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.807.807.2	65.1152	0.449253	1375.39	1375.57	1	184.0	95.2%	3	R.VGGATYQVPVEVR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.886.886.3	47.2944	0.172583	1773.02	1772.96	1	245.0	55.4%	2	R.LSAELLDASNNRGNAVK.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.748.748.2	65.0069	0.334744	1773.95	1772.96	1	179.0	78.6%	1	R.LSAELLDASNNRGNAVK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.857.857.2	41.2394	0.277312	967.252	967.074	1	97.0	92.3%	1	R.AFSHYRW.-	2

RPA3273

71.1%

142

15471

9.6

rplK 50S ribosomal protein L11 3691207:3691635 reverse MW:15471

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.946.946.2	75.8445	0.497572	2011.19	2012.32	1	152.0	75.7%	3	K.LQVPAGAANPSPPIGPALGQR.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1061.1061.1	35.6972	0.276736	1572.94	1572.85	1	12.0	71.4%	3	K.NTPIPVVITIYADR.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1180.1180.2	56.2524	0.371019	1573.17	1572.85	1	36.0	76.0%	1	K.NTPIPVVITIYADR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.864.864.1	37.8914	0.231187	889.58	890.047	1	57.0	100.0%	2	R.SFTFEMK.T	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1005.1005.1	41.6046	0.281128	1083.65	1084.32	1	82.0	100.0%	3	K.TPPMSYFLK.Q	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1165.1165.2	54.0771	0.416265	1084.31	1084.32	1	135.0	87.5%	2	K.TPPMSYFLK.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.725.725.3	55.3295	0.416263	2303.54	2303.63	1	219.0	67.6%	3	K.IQSGSKLPGRDFAGKVTSAQVR.E	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.630.630.2	47.385	0.294353	2303.65	2303.63	1	160.0	65.6%	2	K.IQSGSKLPGRDFAGKVTSAQVR.E	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.717.717.2	50.4278	0.319598	2312.09	2312.69	1	105.0	67.9%	1	R.EIAEKKMKDLNCDTVESAMR.M	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.774.774.2	63.8024	0.448431	1741.43	1742.05	1	117.0	80.8%	1	K.KMKDLNCDTVESAMR.M	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.773.773.3	51.4496	0.348514	1742.15	1742.05	1	246.0	61.8%	2	K.KMKDLNCDTVESAMR.M	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.756.756.2	41.4313	0.121539	849.452	848.999	1	160.0	78.6%	1	R.SMGLRVEG.-	2

RPA3249

70.9%

206

22247

10.3

rplD 50S ribosomal protein L4 3658132:3658752 reverse MW:22247

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1139.1139.2	76.6029	0.520985	3077.25	3078.51	1	208.0	83.9%	3	-.MELKVTTLEGKEAGSVQLSDEIFGLEPR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1254.1254.3	70.6925	0.517212	3078.35	3078.51	1	181.0	68.4%	3	-.MELKVTTLEGKEAGSVQLSDEIFGLEPR.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1086.1086.2	67.7063	0.341544	2577.09	2576.86	1	195.0	77.4%	1	K.VTTLEGKEAGSVQLSDEIFGLEPR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1227.1227.2	57.0563	0.398063	1848.35	1848.02	1	244.0	66.7%	1	K.EAGSVQLSDEIFGLEPR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.394.394.2	38.8863	0.248594	1212.23	1212.36	1	172.0	66.7%	1	R.HGSQRVPQFR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.395.395.3	44.3281	0.30967	1214.36	1212.36	1	226.0	75.8%	1	R.HGSQRVPQFR.G	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.634.634.2	48.8126	0.234267	1073.13	1073.24	1	236.0	70.0%	3	R.GGGRAFGPVVR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.640.640.3	38.6311	0.150899	1073.84	1073.24	1	191.0	67.6%	1	R.GGGRAFGPVVR.S	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.727.727.2	38.8772	0.176026	746.012	745.9	1	195.0	83.3%	3	R.AFGPVVR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.491.491.1	34.7147	0.119638	880.66	881.02	1	168.0	84.6%	1	R.SHAIDLPK.K	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.601.601.2	47.9782	0.170507	881.232	881.02	1	241.0	80.0%	3	R.SHAIDLPK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.395.395.2	61.6655	0.354514	1264.49	1264.51	1	251.0	94.1%	3	R.SHAIDLPKKVR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.392.392.3	47.3846	0.260188	1265.42	1264.51	1	252.0	65.8%	3	R.SHAIDLPKKVR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.232.232.1	35.2464	0.116613	626.39	626.734	1	225.0	90.0%	1	R.HALSAK.A	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.839.839.2	79.1847	0.506949	2012.65	2013.39	1	234.0	83.9%	3	K.AKGGGLIVLDKAELEAAKTK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.995.995.3	84.4015	0.519993	2012.87	2013.39	1	175.0	79.4%	3	K.AKGGGLIVLDKAELEAAKTK.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.898.898.2	79.8438	0.51033	1813.53	1814.13	1	236.0	88.9%	3	K.GGGLIVLDKAELEAAKTK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1066.1066.3	62.3703	0.362604	1815.05	1814.13	1	204.0	65.1%	3	K.GGGLIVLDKAELEAAKTK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1249.1249.3	58.8421	0.410956	3302.0	3301.73	1	165.0	59.8%	2	K.TKTLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1250.1250.2	63.7305	0.423187	3302.03	3301.73	1	153.0	83.3%	1	K.TKTLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1444.1444.3	63.4319	0.467101	3071.66	3072.45	1	95.0	65.5%	12	K.TLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1326.1326.2	102.426	0.576578	3072.83	3072.45	1	145.0	90.6%	3	K.TLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1424.1424.2	78.571	0.408894	2266.07	2266.65	1	134.0	93.5%	4	R.NIPNIDVLPVQGINVYDILR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1540.1540.3	74.818	0.496002	2268.56	2266.65	1	240.0	75.0%	3	R.NIPNIDVLPVQGINVYDILR.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.690.690.2	56.4376	0.310991	916.212	916.023	1	251.0	88.2%	1	K.AAVDALEAR.F	2

RPA3243

70.1%

137

15282

11.8

rplP 50S ribosomal protein L16 3655123:3655536 reverse MW:15282

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1255.1255.3	48.5816	0.308183	1862.57	1862.14	1	244.0	63.9%	2	R.IHGVASSGATLAFGQFGLK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1062.1062.2	104.206	0.582533	1862.83	1862.14	1	123.0	100.0%	2	R.IHGVASSGATLAFGQFGLK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.437.437.2	42.1482	0.147055	1174.07	1174.37	1	0.0	68.4%	1	K.AMEPERITAR.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.900.900.2	54.1577	0.353536	2237.19	2237.7	1	193.0	67.9%	1	R.VWIRVFPDLPVSKKPAEVR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1011.1011.3	50.7609	0.316344	2237.93	2237.7	1	187.0	64.3%	2	R.VWIRVFPDLPVSKKPAEVR.M	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.775.775.2	63.7052	0.403184	1683.09	1683.0	1	60.0	75.0%	3	R.VFPDLPVSKKPAEVR.M	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.783.783.3	42.3953	0.306006	1683.89	1683.0	1	153.0	62.5%	2	R.VFPDLPVSKKPAEVR.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.670.670.1	46.0832	0.379077	1474.59	1475.71	1	66.0	81.0%	2	R.MGSGKGSPELWVAR.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.767.767.2	59.0339	0.407862	1475.47	1475.71	1	204.0	76.0%	2	R.MGSGKGSPELWVAR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.912.912.3	51.2469	0.104451	1475.99	1475.71	1	244.0	72.1%	3	R.MGSGKGSPELWVAR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.935.935.3	56.7471	0.367495	2157.77	2158.53	1	166.0	69.0%	2	R.VKPGRVMFEIDGVNQQIAR.E	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.922.922.2	54.9254	0.333824	2158.09	2158.53	1	194.0	64.5%	3	R.VKPGRVMFEIDGVNQQIAR.E	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1412.1412.3	51.681	0.34325	3199.07	3198.8	1	119.0	69.1%	2	R.VMFEIDGVNQQIAREALTLAAAKLPIKTR.F	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.782.782.1	40.3673	0.308056	1595.96	1596.96	1	129.0	78.3%	1	R.EALTLAAAKLPIKTR.F	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.877.877.3	45.6041	0.29853	1597.01	1596.96	1	124.0	74.5%	1	R.EALTLAAAKLPIKTR.F	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.879.879.2	62.4141	0.430308	1597.75	1596.96	1	222.0	84.0%	3	R.EALTLAAAKLPIKTR.F	2

RPA0159

63.3%

9581

11.0

rpmA, L27 ribosomal protein L27 177918:178190 forward MW:9581

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.804.804.1	44.9661	0.296014	1550.98	1551.79	1	143.0	73.9%	2	K.AFGGEHVIPGNIIAR.Q	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.909.909.2	52.5984	0.313973	1552.53	1551.79	1	242.0	70.4%	2	K.AFGGEHVIPGNIIAR.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.894.894.2	62.666	0.478993	2269.27	2268.56	1	158.0	77.4%	1	R.GTQWHPGLNVGMGTDHTLFAK.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1006.1006.3	53.4606	0.323678	2269.43	2268.56	1	143.0	70.1%	2	R.GTQWHPGLNVGMGTDHTLFAK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.916.916.2	41.2679	0.275822	2710.25	2710.05	1	144.0	60.0%	1	R.GTQWHPGLNVGMGTDHTLFAKVEGR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1152.1152.2	42.3092	0.17339	1764.51	1763.07	1	220.0	51.7%	1	K.ANGRTYVSVLPIAMQAA.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1217.1217.1	36.0657	0.191024	1363.59	1364.65	1	150.0	65.0%	3	R.TYVSVLPIAMQAA.E	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1429.1429.2	57.1705	0.401363	1364.47	1364.65	1	240.0	73.9%	2	R.TYVSVLPIAMQAA.E	2

RPA3078

62.0%

9095

11.5

RPS18 30S ribosomal protein S18 3483247:3483486 forward MW:9094

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.580.580.2	44.2277	0.245405	2242.25	2241.58	1	32.0	61.3%	1	R.RKTCPFTGANAPKIDYKDSK.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.642.642.2	53.1398	0.276081	1235.53	1235.45	1	227.0	81.8%	2	R.KTCPFTGANAPK.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.705.705.2	58.6634	0.393506	2084.75	2085.39	1	46.0	75.0%	1	R.KTCPFTGANAPKIDYKDSK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.765.765.2	62.4086	0.477963	1956.61	1957.21	1	118.0	76.7%	1	K.TCPFTGANAPKIDYKDSK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.610.610.2	59.3114	0.360502	1429.31	1427.73	1	164.0	84.0%	2	R.GKIVPSRITAVSAK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.507.507.3	45.1827	0.212404	1840.34	1840.22	1	108.0	59.3%	3	R.GKIVPSRITAVSAKKQR.E	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.751.751.2	49.4182	0.211214	1242.05	1242.51	1	68.0	77.3%	2	K.IVPSRITAVSAK.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1256.1256.2	55.6222	0.242134	1418.91	1418.77	1	252.0	72.7%	1	R.ARFLGLLPYVIR.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1499.1499.2	62.4394	0.260033	1191.41	1191.5	1	244.0	100.0%	3	R.FLGLLPYVIR.-	2

RPA3248

61.6%

10909

9.9

rplW 50S ribosomal protein L23 3657836:3658135 reverse MW:10908

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.801.801.2	53.7941	0.33508	2298.91	2298.71	1	41.0	69.2%	1	-.MKSIDPRHYDVIVAPVVTEK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.719.719.1	64.3976	0.513988	1469.93	1470.71	1	189.0	95.0%	2	R.HYDVIVAPVVTEK.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.815.815.2	73.2079	0.399495	1470.39	1470.71	1	250.0	86.4%	3	R.HYDVIVAPVVTEK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.464.464.2	53.7024	0.386839	1480.05	1478.71	1	162.0	76.2%	3	K.STMASEHNKVVFK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.417.417.2	44.4956	0.191102	1016.91	1016.23	1	152.0	76.5%	3	K.VKSVNTLVR.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.336.336.3	41.5372	0.170869	2114.48	2113.43	1	105.0	59.0%	1	R.KGKTKAFRGTFGTQSDVKR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.313.313.2	40.8831	0.260457	1196.33	1196.31	1	114.0	70.0%	1	R.GTFGTQSDVKR.A	2

RPA3242

60.9%

7981

10.6

rpmC 50S ribosomal protein L29 3654908:3655117 reverse MW:7981

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.997.997.2	59.6146	0.457386	1795.73	1796.07	1	244.0	72.4%	1	R.AMSEDQMDDAILSLKK.E	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.954.954.2	71.3554	0.508844	2080.73	2081.38	1	241.0	79.3%	3	R.AMSEDQMDDAILSLKKER.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1115.1115.3	51.267	0.233747	2080.82	2081.38	1	106.0	67.8%	5	R.AMSEDQMDDAILSLKKER.F	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.392.392.2	52.0575	0.259455	1508.99	1508.64	1	226.0	75.0%	2	R.FQRATGQLENTSR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.264.264.1	35.1649	0.289035	1076.67	1077.14	1	66.0	93.3%	2	R.ATGQLENTSR.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.297.297.2	45.143	0.345633	1076.97	1077.14	1	224.0	73.7%	1	R.ATGQLENTSR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.546.546.2	35.2251	0.103384	1346.07	1346.49	1	0.0	61.9%	1	R.ATGQLENTSRLR.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.259.259.2	46.5288	0.194811	1029.49	1029.27	1	78.0	82.4%	1	R.IKTIAAQKR.A	2

RPA3245

59.8%

127

13957

10.7

rplV 50S ribosomal protein L22 3656302:3656685 reverse MW:13957

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.513.513.1	50.178	0.413356	1270.65	1271.42	1	165.0	94.4%	2	R.SLPDNEAKAVAR.M	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.624.624.2	57.9548	0.230217	1271.33	1271.42	1	31.0	81.8%	6	R.SLPDNEAKAVAR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1159.1159.2	66.5956	0.28842	1980.05	1980.47	1	16.0	76.9%	3	R.MLRVSPQKLNLVAQLIR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1324.1324.3	53.1685	0.293076	1980.32	1980.47	1	250.0	67.3%	3	R.MLRVSPQKLNLVAQLIR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1077.1077.2	65.2758	0.446751	1579.69	1579.93	1	97.0	80.0%	3	R.VSPQKLNLVAQLIR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1274.1274.3	54.8707	0.27356	1579.73	1579.93	1	86.0	70.8%	3	R.VSPQKLNLVAQLIR.G	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1336.1336.2	49.2576	0.135593	1040.65	1040.3	1	229.0	82.4%	1	K.LNLVAQLIR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.821.821.2	61.1843	0.410319	1534.93	1534.76	1	193.0	76.9%	1	R.GRKASAALADLAFSR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.975.975.3	43.5459	0.310601	1535.45	1534.76	1	255.0	62.5%	2	R.GRKASAALADLAFSR.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.870.870.2	79.7669	0.500082	1321.67	1321.52	1	254.0	91.7%	3	R.KASAALADLAFSR.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.774.774.1	46.8981	0.329994	1322.31	1321.52	1	168.0	85.0%	1	R.KASAALADLAFSR.K	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1139.1139.2	59.0905	0.396668	1193.79	1193.35	1	233.0	77.3%	3	K.ASAALADLAFSR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1219.1219.2	39.4339	0.167318	2031.35	2033.21	1	192.0	56.2%	1	E.NNHDLDVDALVVSEAHVGK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1150.1150.2	65.4373	0.414728	1532.35	1532.91	1	131.0	86.4%	2	R.IFKPFAQLTIVVR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1356.1356.3	59.2263	0.224819	1534.55	1532.91	1	191.0	81.6%	1	R.IFKPFAQLTIVVR.Q	3

RPA3077

58.9%

158

17932

5.7

RPS6 possible 30S ribosomal protein S6 3482765:3483241 forward MW:17932

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1020.1020.2	67.6782	0.377658	1244.97	1245.47	1	244.0	100.0%	3	M.PLYEHVFLAR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1019.1019.3	56.0798	0.34205	1246.91	1245.47	1	253.0	81.2%	3	M.PLYEHVFLAR.Q	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1480.1480.3	65.3669	0.541633	4129.43	4128.67	1	236.0	63.6%	2	M.PLYEHVFLARQDASAQQVEELTTQITGVIEGLGGKVTK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1655.1655.3	74.8695	0.41671	2572.85	2573.82	1	253.0	72.9%	3	R.QDASAQQVEELTTQITGVIEGLGGK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1567.1567.2	78.1844	0.513854	2573.95	2573.82	1	222.0	83.9%	3	R.QDASAQQVEELTTQITGVIEGLGGK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1533.1533.2	46.4467	0.300023	2901.81	2902.23	1	11.0	56.7%	3	R.QDASAQQVEELTTQITGVIEGLGGKVTK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1614.1614.3	55.8258	0.327777	2902.31	2902.23	1	42.0	73.1%	2	R.QDASAQQVEELTTQITGVIEGLGGKVTK.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1577.1577.3	52.6288	0.250576	3731.39	3732.14	1	173.0	65.9%	3	R.QDASAQQVEELTTQITGVIEGLGGKVTKTESWGLR.S	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1356.1356.2	53.7155	0.309844	2154.33	2151.47	1	33.0	64.7%	1	K.AHFVLLNIDGPAAVVSEIER.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1256.1256.2	57.658	0.3865	2565.15	2564.91	1	144.0	69.7%	3	K.AHFVLLNIDGPAAVVSEIERQER.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1374.1374.3	42.1721	0.190339	3404.78	3404.85	1	140.0	61.5%	2	K.AHFVLLNIDGPAAVVSEIERQERINEDVIR.Y	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.714.714.2	50.9077	0.144351	859.032	858.971	1	238.0	84.6%	2	R.INEDVIR.Y	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.822.822.3	55.2675	0.326812	2120.75	2121.4	1	223.0	70.2%	2	R.YLTVRVDEHEEGPSAMMR.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.823.823.2	62.001	0.409972	2120.95	2121.4	1	248.0	67.7%	3	R.YLTVRVDEHEEGPSAMMR.K	2

RPA3238

57.8%

185

21038

9.2

rplE 50S ribosomal protein L5 3653351:3653908 reverse MW:21038

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.479.479.2	45.8271	0.217552	907.112	907.014	1	49.0	80.0%	3	M.AETAYVPR.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1060.1060.3	42.4544	0.272846	3555.77	3554.11	1	105.0	59.3%	1	K.LDKVVLNMGVGEAVNDRKKAEQAAADLSLIAGQK.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.487.487.2	37.3456	0.169024	809.912	809.941	1	216.0	90.0%	1	K.AVITYSR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.987.987.3	46.1413	0.19167	1905.56	1905.27	1	174.0	68.6%	2	R.VAISTFKLRENQPIGCK.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.837.837.2	45.729	0.313705	1905.89	1905.27	1	132.0	60.0%	1	R.VAISTFKLRENQPIGCK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.824.824.2	39.5868	0.186843	2375.21	2374.86	1	4.0	55.2%	1	R.VAISTFKLRENQPIGCKVTLR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.936.936.3	55.675	0.37778	2375.45	2374.86	1	245.0	68.8%	2	R.VAISTFKLRENQPIGCKVTLR.Q	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.830.830.3	39.7994	0.199817	1625.96	1627.95	1	84.0	60.4%	1	K.LRENQPIGCKVTLR.Q	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.972.972.2	42.6248	0.210338	973.912	974.124	1	187.0	84.6%	2	R.MYEFIDR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1469.1469.2	66.5264	0.428099	1837.75	1838.22	1	54.0	78.6%	2	R.MYEFIDRLITVALPR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1629.1629.3	63.2081	0.211049	1838.51	1838.22	1	221.0	76.6%	1	R.MYEFIDRLITVALPR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1070.1070.2	50.3805	0.126886	883.052	883.123	1	109.0	100.0%	2	R.LITVALPR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.565.565.2	42.3667	0.264956	1202.57	1202.4	1	6.0	77.8%	2	R.VRDFRGLNPK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1325.1325.2	65.6383	0.392655	1425.73	1425.67	1	236.0	85.7%	2	R.ALLTAFNFPFRQ.-	2

RPA3244

57.0%

235

26270

10.0

rpsC 30S ribosomal protein S3 3655572:3656279 reverse MW:26270

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.769.769.2	52.4202	0.1978	1096.53	1096.32	1	226.0	84.2%	3	M.GQKINPIGLR.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.519.519.1	38.6817	0.195222	1200.8	1200.34	1	81.0	81.2%	1	R.WFAGKNEYGK.L	1
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1020.1020.3	38.8165	0.189198	3894.2	3892.54	1	57.0	55.6%	1	R.WFAGKNEYGKLLHEDVKIREILHKELKQAAVAR.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.875.875.2	68.1079	0.343433	2113.99	2114.54	1	8.0	88.5%	1	K.LLHEDVKIREILHKELK.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.869.869.3	52.2513	0.247192	2114.0	2114.54	1	92.0	70.4%	2	K.LLHEDVKIREILHKELK.Q	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.840.840.2	51.8472	0.305991	2710.25	2711.23	1	9.0	73.1%	1	K.LLHEDVKIREILHKELKQAAVAR.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.939.939.3	77.5703	0.518477	2710.61	2711.23	1	214.0	79.0%	2	K.LLHEDVKIREILHKELKQAAVAR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.761.761.3	45.2027	0.231511	1876.16	1876.26	1	98.0	60.7%	1	K.IREILHKELKQAAVAR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.324.324.2	47.8594	0.234119	1120.29	1120.38	1	149.0	81.2%	2	R.IVIERPHKK.C	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.562.562.2	56.5954	0.360144	1560.85	1562.9	1	14.0	66.7%	2	R.VTIHSARPGVVIGKK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1404.1404.3	46.4302	0.407063	4195.16	4193.83	1	181.0	65.4%	1	R.KKVADITSSDVVINIVEIRKPELDATLVAESIAQQLER.R	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1506.1506.3	54.6052	0.473054	3937.85	3937.48	1	229.0	65.2%	1	K.VADITSSDVVINIVEIRKPELDATLVAESIAQQLER.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.482.482.2	36.4428	0.192535	1178.49	1178.38	1	51.0	63.2%	2	R.EGRVPLHTLR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.906.906.2	37.0409	0.151025	2312.63	2313.69	1	160.0	69.2%	1	K.VWIFKGEILEHDPMAQDKR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1015.1015.3	46.5959	0.209866	2314.37	2313.69	1	80.0	64.3%	1	K.VWIFKGEILEHDPMAQDKR.M	3

RPA3129

56.4%

6367

10.1

RPL33 50S ribosomal protein L33 3537789:3537956 forward MW:6366

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.827.827.1	38.2833	0.388174	1564.77	1565.76	1	153.0	71.4%	1	K.LVSTADTGFYYVTK.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.840.840.2	54.465	0.335094	1693.59	1693.94	1	112.0	72.0%	2	K.LVSTADTGFYYVTKK.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.555.555.2	62.5268	0.361722	1912.17	1912.33	1	201.0	67.9%	1	R.TMTDKMVKKKYDPVAR.K	2

RPA3237

53.5%

101

11464

11.7

rpsN 30S ribosomal protein S14 3653002:3653307 reverse MW:11463

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.564.564.2	76.483	0.484551	1729.89	1730.08	1	253.0	81.5%	3	R.LKAIIADKSKPMEER.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.684.684.3	68.3738	0.447598	1730.12	1730.08	1	219.0	80.9%	3	R.LKAIIADKSKPMEER.F	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.757.757.2	54.9886	0.219115	2364.03	2361.86	1	194.0	70.0%	1	R.LKAIIADKSKPMEERFAATLK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.371.371.2	67.9046	0.487865	1488.27	1488.75	1	242.0	90.0%	2	K.AIIADKSKPMEER.F	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.467.467.2	34.6402	0.11497	650.912	650.796	1	153.0	75.0%	1	R.FAATLK.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.540.540.1	37.3647	0.12955	651.35	650.796	1	152.0	100.0%	1	R.FAATLK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1087.1087.2	65.4328	0.367897	1349.81	1348.65	1	242.0	86.4%	1	R.FAATLKLAEMPR.N	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.674.674.3	41.5627	0.242135	1237.4	1236.46	1	139.0	62.9%	2	R.SVYRLNKLSR.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.620.620.1	33.428	0.20053	1000.71	1001.17	1	132.0	92.3%	2	R.IAIRDLGSR.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.750.750.2	39.2415	0.105618	1001.27	1001.17	1	196.0	70.6%	3	R.IAIRDLGSR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.944.944.1	40.5862	0.117062	798.81	799.045	1	192.0	92.3%	1	R.GLVLGLVK.S	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1106.1106.2	44.8204	0.179392	799.032	799.045	1	221.0	80.0%	2	R.GLVLGLVK.S	2

RPA4836

53.4%

9709

12.0

rpsT 30S ribosomal protein S20 5458392:5458658 forward MW:9709

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.217.217.2	51.1098	0.436255	1135.05	1135.27	1	173.0	71.4%	1	M.ANTSSAKKATR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.219.219.2	41.2427	0.132714	1263.39	1263.44	1	18.0	63.6%	1	M.ANTSSAKKATRK.I	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.250.250.2	34.1932	0.122656	932.392	932.072	1	4.0	68.8%	1	R.RTAVNKSR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.724.724.2	73.5058	0.400001	1658.69	1658.85	1	251.0	75.9%	3	R.IVEEAIASGDRDAALK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.854.854.2	55.6056	0.344874	2087.83	2088.39	1	192.0	66.7%	3	R.IVEEAIASGDRDAALKAMAR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1009.1009.3	66.0042	0.484418	2088.98	2088.39	1	237.0	61.4%	5	R.IVEEAIASGDRDAALKAMAR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.259.259.1	31.3974	0.102805	769.68	769.92	1	196.0	81.8%	1	R.LTHSIAK.L	1

RPA3269

51.2%

125

12844

5.1

rplL 50S ribosomal protein L7/L12 3687607:3687984 reverse MW:12843

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1559.1559.2	103.307	0.589287	2443.75	2443.8	1	188.0	96.8%	8	M.ADLQKIVDDLSSLTVLEAAELAK.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1584.1584.3	47.9396	0.198199	2445.05	2443.8	1	211.0	54.4%	3	M.ADLQKIVDDLSSLTVLEAAELAK.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1817.1817.3	67.7451	0.513451	3055.52	3056.52	1	103.0	67.9%	4	M.ADLQKIVDDLSSLTVLEAAELAKLLEEK.W	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1799.1799.2	68.3841	0.464474	3055.55	3056.52	1	131.0	80.0%	3	M.ADLQKIVDDLSSLTVLEAAELAKLLEEK.W	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1274.1274.1	47.4108	0.286399	1887.83	1888.17	1	164.0	75.0%	1	K.IVDDLSSLTVLEAAELAK.L	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1329.1329.2	83.8	0.468988	1888.31	1888.17	1	215.0	86.7%	8	K.IVDDLSSLTVLEAAELAK.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1279.1279.3	67.421	0.380776	1888.49	1888.17	1	253.0	69.1%	3	K.IVDDLSSLTVLEAAELAK.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1484.1484.2	69.2485	0.458921	2500.57	2500.89	1	181.0	81.2%	3	K.IVDDLSSLTVLEAAELAKLLEEK.W	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1604.1604.3	53.4277	0.249273	2500.73	2500.89	1	85.0	61.2%	3	K.IVDDLSSLTVLEAAELAKLLEEK.W	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.702.702.3	41.7549	0.162264	2510.33	2508.88	1	170.0	58.0%	1	K.DLVEGAPKPLKEGVNKEEAEKVK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.844.844.3	56.6606	0.400402	3078.56	3078.54	1	177.0	68.0%	2	K.DLVEGAPKPLKEGVNKEEAEKVKAQLEK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.740.740.2	44.2681	0.316788	3079.05	3078.54	1	1.0	66.7%	1	K.DLVEGAPKPLKEGVNKEEAEKVKAQLEK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.879.879.3	43.4745	0.302858	3875.12	3875.5	1	128.0	61.8%	1	K.DLVEGAPKPLKEGVNKEEAEKVKAQLEKAGAKVELK.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.534.534.2	74.1509	0.43973	1385.79	1385.65	1	240.0	100.0%	5	K.AQLEKAGAKVELK.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.649.649.3	48.0064	0.10072	1386.05	1385.65	1	208.0	69.6%	1	K.AQLEKAGAKVELK.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.282.282.2	53.8891	0.108825	815.972	815.989	1	199.0	100.0%	1	K.AGAKVELK.-	2

RPA0039

48.5%

7547

11.9

rpmI 50S ribosomal protein L35 45869:46069 reverse MW:7547

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.308.308.1	34.7339	0.171377	851.52	852.022	1	156.0	84.6%	1	R.FKVTATGK.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.243.243.2	35.5916	0.233819	744.092	741.936	1	34.0	83.3%	1	R.HGMIKR.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.614.614.3	52.8953	0.231977	1350.77	1350.56	1	149.0	65.9%	1	R.AIFKTDGDNIKK.Y	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1054.1054.2	64.3977	0.441433	2055.89	2056.37	1	70.0	84.6%	2	R.AIFKTDGDNIKKYFLPNA.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1219.1219.3	41.1662	0.195643	2056.1	2056.37	1	235.0	58.2%	1	R.AIFKTDGDNIKKYFLPNA.-	3

RPA3080

47.7%

195

21179

5.1

RPL9 putative 50S ribosomal protein L9, cultivar specific nodulation protein Csn1 3484599:3485186 forward MW:21179

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1136.1136.2	54.9936	0.152632	1002.45	1003.25	1	249.0	86.7%	1	-.MEVILLER.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.798.798.2	50.8767	0.248039	1301.31	1301.6	1	198.0	76.2%	1	R.VAKLGQMGELVR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.952.952.3	49.5037	0.221343	1301.87	1301.6	1	205.0	68.4%	1	R.VAKLGQMGELVR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.910.910.2	56.5165	0.295385	1003.05	1003.21	1	204.0	88.2%	1	K.LGQMGELVR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.591.591.3	62.1965	0.420184	2205.74	2205.46	1	255.0	59.3%	2	R.ATAANREKYEHMKADLEAR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.820.820.2	77.3233	0.36817	2539.65	2538.95	1	174.0	81.2%	1	R.NIAAKAEATKVAEKIDGQNVVVIR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.932.932.3	64.45	0.449511	2540.66	2538.95	1	58.0	70.1%	2	R.NIAAKAEATKVAEKIDGQNVVVIR.Q	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.970.970.3	56.7629	0.385371	2042.0	2041.36	1	252.0	61.3%	1	K.AEATKVAEKIDGQNVVVIR.Q	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1436.1436.3	40.7864	0.297795	3137.72	3138.47	1	244.0	54.4%	2	R.QASEGGQLFGSVSVRDIIASFDGQGVKIDR.S	3

RPA0038

46.2%

119

13301

11.5

rplT ribosomal protein L20 45426:45785 reverse MW:13300

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.1252.1252.2	70.976	0.402864	2286.13	2286.7	1	113.0	80.0%	3	R.LNAAVRPFGMTYSVFINGLSK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1300.1300.3	55.7717	0.326978	2286.92	2286.7	1	159.0	61.2%	2	R.LNAAVRPFGMTYSVFINGLSK.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1354.1354.3	50.5962	0.325388	3452.78	3453.02	1	150.0	61.4%	1	K.SGIVVDRKVLSDLAINEPAAFQAIAEKAKAALAA.-	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1136.1136.2	76.8211	0.43081	2129.57	2129.46	1	204.0	84.8%	1	R.KVLSDLAINEPAAFQAIAEK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1349.1349.2	36.6626	0.154842	2725.13	2726.19	1	34.0	59.4%	1	R.KVLSDLAINEPAAFQAIAEKAKAALAA.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1172.1172.2	83.9727	0.506697	2001.87	2001.29	1	206.0	84.4%	3	K.VLSDLAINEPAAFQAIAEK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1070.1070.2	45.9093	0.213445	2200.93	2200.54	1	162.0	57.6%	1	K.VLSDLAINEPAAFQAIAEKAK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1415.1415.2	57.7343	0.376748	2597.57	2598.02	1	130.0	75.0%	2	K.VLSDLAINEPAAFQAIAEKAKAALAA.-	2

RPA3225

45.3%

139

15675

9.8

rplQ 50S ribosomal protein L17 3644784:3645203 reverse MW:15675

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.228.228.2	48.8314	0.352095	994.252	993.224	1	160.0	86.7%	1	-.MKHGKVHR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1209.1209.3	62.1411	0.414262	2559.68	2560.17	1	171.0	68.1%	3	R.KAMFANMCAALIKHEQIVTTLPK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1140.1140.2	67.1359	0.488353	2559.91	2560.17	1	20.0	86.2%	3	R.KAMFANMCAALIKHEQIVTTLPK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1469.1469.2	65.3271	0.500312	1285.05	1284.65	1	241.0	81.8%	2	K.AMFANMCAALIK.H	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1294.1294.2	65.2575	0.457966	2430.97	2431.99	1	198.0	77.4%	3	K.AMFANMCAALIKHEQIVTTLPK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1349.1349.3	57.2424	0.337877	2431.46	2431.99	1	102.0	66.2%	3	K.AMFANMCAALIKHEQIVTTLPK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1160.1160.2	56.6435	0.359847	2632.27	2631.24	1	164.0	73.3%	1	K.AMFANMCAALIKHEQIVTTLPKAK.E	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1272.1272.3	68.9861	0.520712	2633.63	2631.24	1	216.0	63.4%	1	K.AMFANMCAALIKHEQIVTTLPKAK.E	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.410.410.1	35.4001	0.120565	984.65	984.185	1	100.0	83.3%	1	K.ELRPIVEK.L	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1350.1350.3	53.7606	0.315568	2571.77	2572.05	1	245.0	68.3%	3	R.QAIAEMRDIEQVKKLFDVLAPR.Y	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1295.1295.2	41.594	0.111367	2574.65	2572.05	1	16.0	68.0%	1	R.QAIAEMRDIEQVKKLFDVLAPR.Y	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1435.1435.3	56.4604	0.31808	1772.0	1772.1	1	244.0	71.1%	2	R.DIEQVKKLFDVLAPR.Y	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1124.1124.2	52.9163	0.185916	930.812	931.123	1	251.0	86.7%	1	K.LFDVLAPR.Y	2

RPA0244

44.3%

106

12149

10.6

rpsP, S16 ribosomal protein S16 268667:268987 reverse MW:12149

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.925.925.2	69.0492	0.457497	1739.33	1739.99	1	206.0	81.5%	3	R.LGYFNPLMAKDNEAR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1090.1090.3	55.8027	0.259715	1740.83	1739.99	1	240.0	61.5%	2	R.LGYFNPLMAKDNEAR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1230.1230.3	47.4404	0.225458	3405.83	3407.02	1	137.0	59.2%	1	R.LGYFNPLMAKDNEARLKLDLDKVKDWLAK.G	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1106.1106.2	69.6	0.442468	1685.79	1686.05	1	177.0	84.0%	2	R.LKLDLDKVKDWLAK.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1269.1269.3	54.4032	0.296935	1686.89	1686.05	1	184.0	70.5%	3	R.LKLDLDKVKDWLAK.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.990.990.2	69.6923	0.394184	2398.55	2397.78	1	197.0	76.7%	1	R.LKLDLDKVKDWLAKGAQPSDR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1049.1049.3	48.5599	0.213063	2723.24	2724.18	1	167.0	64.7%	1	R.LKLDLDKVKDWLAKGAQPSDRVAR.F	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.652.652.2	51.0524	0.269627	880.572	879.004	1	201.0	86.7%	3	R.FLDTAGVR.K	2

RPA3247

41.4%

278

30644

10.8

rplB 50S ribosomal protein L2 3656986:3657822 reverse MW:30644

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.544.544.1	41.4697	0.243843	1430.83	1431.64	1	32.0	80.0%	1	M.ALKTFNPTTPGQR.Q	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.624.624.2	53.3106	0.258185	1433.43	1431.64	1	236.0	69.6%	2	M.ALKTFNPTTPGQR.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.250.250.2	41.4413	0.289221	1277.25	1277.43	1	16.0	70.0%	2	R.FRGGGHKQAYR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.415.415.3	51.5173	0.311781	1243.4	1242.46	1	239.0	70.3%	1	R.TKVDVPAKVER.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1243.1243.3	47.6797	0.182562	3402.05	3399.83	1	20.0	62.2%	2	R.LEYDPNRTAFIALIKYEDGEQAYILAPQR.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.941.941.2	35.5076	0.1259	2134.59	2135.39	1	216.0	46.7%	1	R.SAGTYAQIVGRDHDYVILR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.940.940.3	46.6547	0.282192	2136.29	2135.39	1	211.0	60.0%	3	R.SAGTYAQIVGRDHDYVILR.M	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.330.330.3	44.6527	0.311081	2020.31	2020.35	1	172.0	55.7%	1	R.TSGGRHPVTPWGKPTKGKK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.619.619.1	43.6409	0.242644	1508.87	1509.75	1	150.0	89.5%	1	R.SNKSTDKFILISR.H	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.709.709.2	68.5142	0.379937	1509.55	1509.75	1	216.0	87.0%	3	R.SNKSTDKFILISR.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.854.854.3	55.2979	0.294369	1510.76	1509.75	1	247.0	75.0%	3	R.SNKSTDKFILISR.H	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.942.942.2	51.6293	0.208804	1180.27	1180.39	1	228.0	78.9%	1	K.STDKFILISR.H	2

RPA3228

39.1%

128

14446

10.8

rpsM 30S ribosomal protein S13 3647032:3647418 reverse MW:14446

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.679.679.2	52.5032	0.35115	1410.91	1410.66	1	196.0	72.7%	2	V.ARIAGVNIPTNKR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.810.810.3	46.0052	0.153011	1411.1	1410.66	1	207.0	66.7%	1	V.ARIAGVNIPTNKR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1094.1094.2	76.3677	0.375868	1554.49	1553.89	1	205.0	84.0%	2	R.VLIALQYIHGIGQK.N	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1183.1183.2	85.0672	0.479902	2408.17	2408.85	1	242.0	86.7%	3	R.VLIALQYIHGIGQKNAADILEK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1180.1180.3	69.0377	0.389936	2408.63	2408.85	1	226.0	75.0%	2	R.VLIALQYIHGIGQKNAADILEK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1300.1300.3	66.2591	0.532574	3230.51	3230.87	1	93.0	68.8%	2	R.VLIALQYIHGIGQKNAADILEKVKIPLDR.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1229.1229.3	40.3024	0.112016	1696.85	1696.0	1	76.0	64.0%	1	K.NAADILEKVKIPLDR.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1012.1012.2	43.0717	0.150006	970.792	971.188	1	214.0	73.3%	1	R.LMDLGCYR.G	2

RPA0064

38.4%

565

62801

5.4

rpsA ribosomal protein S1 70316:72013 forward MW:62801

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1157.1157.3	50.4092	0.256539	3737.84	3738.04	1	201.0	64.8%	2	M.ASTDTYNPTRDDFAAMLDESFAGGNLQESSVIKGK.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1804.1804.3	57.9976	0.335093	2504.09	2503.82	1	174.0	66.7%	2	K.VGDTVEVFLDRIENALGEAVLSR.D	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.495.495.2	52.4502	0.24203	1261.93	1262.41	1	82.0	93.8%	2	R.REESWGKLEK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1089.1089.2	36.7284	0.155928	2880.75	2881.37	1	0.0	59.3%	1	R.SQVDIRPIRDVAPLMNNSQPFQILK.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1205.1205.3	45.6926	0.317577	2881.25	2881.37	1	132.0	59.4%	1	R.SQVDIRPIRDVAPLMNNSQPFQILK.M	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.726.726.2	33.1734	0.198469	1793.63	1793.08	1	0.0	57.1%	1	R.RVNHPTEVLTIGQTVK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1439.1439.3	41.6613	0.294955	3928.85	3927.47	1	225.0	60.0%	1	R.FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKK.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1479.1479.3	50.051	0.302302	3467.63	3465.95	1	194.0	65.4%	2	R.VTNITDYGAFVELEPGIEGLIHVSEMSWTKK.N	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.969.969.3	41.5036	0.314927	3066.41	3066.51	1	155.0	56.3%	1	K.NMHPGKIVSTSQEVEVQVLEVDSVKRR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.391.391.2	41.9632	0.194578	878.372	878.06	1	240.0	76.9%	1	R.VIQFDKK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.330.330.1	32.1655	0.109543	801.67	802.005	1	225.0	75.0%	1	R.KVQVSIK.A	1
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1226.1226.2	42.7685	0.333007	3208.85	3209.53	1	198.0	54.8%	1	K.ALEVAEEKEAIAQYGSSDSGATLGDILGTALK.Q	2

RPA3235

36.2%

177

19404

9.6

rplF 50S ribosomal protein L6 3651942:3652475 reverse MW:19404

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.732.732.3	60.2071	0.462635	2426.51	2426.82	1	158.0	65.8%	1	M.SRVGKKPVTVPSGVTATVEGQTVK.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.739.739.2	60.5843	0.45562	2426.99	2426.82	1	98.0	74.3%	3	M.SRVGKKPVTVPSGVTATVEGQTVK.M	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.845.845.1	39.5286	0.232917	1242.66	1243.45	1	144.0	77.8%	1	R.AQIANLVEGVTK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1120.1120.2	63.5688	0.447252	1243.07	1243.45	1	120.0	77.3%	1	R.AQIANLVEGVTK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1143.1143.2	79.1611	0.509088	1704.81	1704.96	1	246.0	86.2%	3	R.AQIANLVEGVTKGFEK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1350.1350.3	50.145	0.195391	1705.1	1704.96	1	216.0	68.0%	2	R.AQIANLVEGVTKGFEK.K	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1369.1369.3	73.3079	0.555705	2822.51	2822.28	1	229.0	77.0%	1	R.AQIANLVEGVTKGFEKKLEITGVGYR.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1262.1262.2	69.5016	0.414989	2822.63	2822.28	1	106.0	75.9%	2	R.AQIANLVEGVTKGFEKKLEITGVGYR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.859.859.2	64.0627	0.294563	1136.25	1136.34	1	248.0	89.5%	2	K.KLEITGVGYR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.620.620.1	36.2432	0.201296	1136.86	1136.34	1	85.0	76.5%	1	K.KLEITGVGYR.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.596.596.2	47.9507	0.300146	1759.11	1760.05	1	2.0	78.3%	1	R.YADEFIFRKEGKKK.-	2

RPA3227

32.6%

129

13878

11.3

rpsK 30S ribosomal protein S11 3646512:3646901 reverse MW:13877

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.720.720.2	80.9937	0.509817	1649.37	1649.84	1	178.0	95.8%	1	R.KSTPYAAQVAAEDVAK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.827.827.3	79.094	0.556255	2587.85	2587.92	1	187.0	72.2%	3	R.KSTPYAAQVAAEDVAKKAQEHGMR.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.729.729.2	76.376	0.447549	2588.65	2587.92	1	191.0	83.9%	3	R.KSTPYAAQVAAEDVAKKAQEHGMR.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.712.712.1	35.9176	0.295827	1520.9	1521.67	1	57.0	58.3%	1	K.STPYAAQVAAEDVAK.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.811.811.2	44.2705	0.213259	1523.13	1521.67	1	1.0	70.4%	1	K.STPYAAQVAAEDVAK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.884.884.2	70.4818	0.474849	2459.67	2459.75	1	250.0	71.9%	2	K.STPYAAQVAAEDVAKKAQEHGMR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.885.885.3	47.4602	0.258543	2459.93	2459.75	1	115.0	64.3%	3	K.STPYAAQVAAEDVAKKAQEHGMR.T	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.984.984.3	44.4108	0.237812	1941.98	1940.19	1	211.0	61.0%	3	A.AQVAAEDVAKKAQEHGMR.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.785.785.2	55.1661	0.301033	1828.43	1829.02	1	0.0	71.0%	2	R.TLEVEVAGPGSGRESALR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.940.940.3	37.4993	0.164576	1828.73	1829.02	1	109.0	50.0%	1	R.TLEVEVAGPGSGRESALR.A	3

RPA4230

26.6%

10163

11.3

RPA4230 conserved unknown protein 4772098:4772382 forward MW:10163

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.437.437.2	42.2099	0.171296	1820.19	1820.05	1	16.0	64.0%	1	R.EYTKEDIKELKAHSK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.547.547.2	59.3986	0.269239	1084.31	1084.26	1	171.0	88.2%	3	K.ARTPVAEIAR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.496.496.1	34.21	0.185612	856.76	856.998	1	35.0	91.7%	3	R.TPVAEIAR.L	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.503.503.2	52.671	0.313372	857.492	856.998	1	233.0	86.7%	3	R.TPVAEIAR.L	2

RPA4176

23.0%

10064

11.2

rpsU, S21 ribosomal protein S21 4721053:4721316 forward MW:10064

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1012.1012.2	49.1176	0.195056	2055.89	2056.44	1	73.0	66.7%	1	-.MQVLVRDNNVDQALKALK.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.881.881.3	69.9348	0.432477	2312.63	2312.79	1	165.0	73.0%	1	-.MQVLVRDNNVDQALKALKKK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.775.775.2	44.9323	0.200711	2312.63	2312.79	1	128.0	65.5%	1	-.MQVLVRDNNVDQALKALKKK.M	2

RPA0176

20.0%

476

50717

5.2

atpD putative H+-transporting ATP synthase beta chain. 194774:196204 reverse MW:50717

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1396.1396.2	59.0205	0.382862	2443.33	2440.89	1	172.0	69.7%	1	K.IGLFGGAGVGKTVLIQELINNVAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1690.1690.3	44.7721	0.2905	3197.03	3195.61	1	119.0	63.0%	1	R.VGLTGLTVAEHFRDQGQDVLFFVDNIFR.F	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1092.1092.3	42.537	0.10659	2021.93	2020.25	1	26.0	53.6%	1	R.AISEKGIYPAVDPLDSTSR.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1505.1505.2	63.3315	0.418856	2662.67	2661.05	1	155.0	76.7%	1	K.SLQDIIAILGMDELSEEDKLTVAR.A	2

RPA0158

17.5%

126

13491

10.2

rplU, L21 putative ribosomal protein L21 177448:177828 forward MW:13490

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	Prep4_Anaer_Gradient_1st_052703_PPM.909.909.2	38.1619	0.120736	709.072	708.942	1	200.0	100.0%	1	-.MFAVIK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.664.664.2	64.9825	0.394651	1681.71	1681.97	1	220.0	81.5%	3	R.ITEILADGKKPSVGPR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.581.581.1	34.5578	0.283305	1681.99	1681.97	1	192.0	62.5%	1	R.ITEILADGKKPSVGPR.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.809.809.3	51.3079	0.224024	1682.99	1681.97	1	216.0	62.7%	3	R.ITEILADGKKPSVGPR.A	3

RPA0185

16.9%

467

48585

7.1

dldH dihydrolipoamide dehydrogenase, E3 component of 2-oxoglutarate and pyruvate dehydrogenase complexes 205473:206876 reverse MW:48585

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1241.1241.3	76.0483	0.554536	1958.78	1958.18	1	236.0	75.0%	2	K.ALLHASELFEEAGHSFAK.M	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1694.1694.3	61.4039	0.47161	3148.85	3147.67	1	211.0	76.0%	1	R.LGAEVTVVEFLDRILPGMDGEVVKQFQR.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1476.1476.3	45.5858	0.302009	3482.87	3480.01	1	159.0	57.1%	1	R.VLGVHIIGREAGEMIHEAAVLMEFGGSAEDLAR.T	3

RPA0040

16.1%

192

21923

9.3

infC translation initiation factor IF-3 46403:46981 reverse MW:21922

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1066.1066.2	57.1523	0.345818	2280.61	2280.71	1	220.0	61.8%	1	K.MAMDAGMDLVEISPTSSPPVCK.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.549.549.2	40.1957	0.161398	1099.13	1099.23	1	149.0	68.8%	1	R.FFEEGDKVK.I	2

RPA0188

10.8%

417

43864

6.3

sucB dihydrolipoamide succinyl transferase 208123:209376 reverse MW:43864

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1257.1257.2	66.1956	0.502077	2941.81	2942.45	1	187.0	78.6%	1	R.LKEVQNTAAMLTTFNEVDMTNVMALR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1442.1442.2	46.6468	0.294781	1047.73	1048.29	1	232.0	81.2%	1	K.LGFMGFFTK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.355.355.2	51.2015	0.22856	1146.17	1144.27	1	196.0	73.7%	2	R.VKESLEDPAR.L	2

	Proteins	Peptide IDs	Copies
Unfiltered	11604	8237	76057
Redundant	57	756	1411
Nonredundant	57	756	1411

/auto/gtl/misc/Chandra/bradRibo/run1D/dbdigger/arabiU/simpleB2