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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs2298966          
refSNP ID: rs2298966
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_001004056.1:c.243+4091C>T
NM_001004057.1:c.339+4091C>T
NM_182982.2:c.339+4091C>T
NT_006081.18:g.1503762C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10105210 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2298966 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss3244083YUSUKE|IMS-JST054168fwd/BC/Tgagaccatcctggccaagatggtgaaacccgtctctactaacaatacaaaaattagccag09/05/0110/10/03100Genomicunknown
ss3526407SC_JCM|Z68273.1_14735rev/TA/Gctggctaatttttgtattgttagtagagacgggtttcaccatcttggccaggatggtctc09/24/0110/10/03126Genomicunknown
ss6459668WI_SSAHASNP|NT_006081.13_423187fwd/BC/Tgagaccatcctggccaagatggtgaaacccgtctctactaacaatacaaaaattagccag02/12/0310/10/03126Genomicunknown
ss10105210BCM_SSAHASNP|chr4.NT_006081.15_102819fwd/BC/Tgagaccatcctggccaagatggtgaaacccgtctctactaacaatacaaaaattagccag06/27/0310/10/03126Genomicunknown
ss42157836ABI|hCV1840618fwd/BC/Tgagaccatcctggccaagatggtgaaacccgtctctactaacaatacaaaaattagccag07/17/0507/17/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2298966|allelePos=1731|totalLen=2212|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=126
 AATCATGGTA GATATAGCAA ATGTGGAAGA GGAGGGAAGG GGAGGTTATA CATGTGTGGC
 TTGGtgcctt agtctgtttt gtgctgctgt aatagaatgc cagagactgg gtaatttatg
 tatttattta ttttaacttc tattttaagt tcgggggtac atgtgcaggt ttgttacgta
 ggtaaacttg catcatgggg tttgttgtac agattatttc atcacccagg tattaagctt
 agcacccttt agttattttt cttgatctgc tccttcccca catcccccat cctccaatag
 gccccattgt gtggtgtttc cctctgtgtg tccatgtgtc ctcatcattt agctcccact
 cttaagtaag aatatgtggt atttggtttt ctgttcctgt gttagtttgc taaggataat
 ggcctccagc tccatccatg ttcttgcaaa gaacatgatc gttctctttt ttacggctgc
 atagtattcc atagtgtata tgtaccccat tttctttatc cggtttatca ttgatgggca
 tttaggttga ttccatgtgt ttgctattgc aaatagtgtt gcaatgaaca tatgcgtgca
 tggagactgg gtaatttata ataaaaagaa atttcttggc tcacagtttt agaggctagg
 atgcccagtt caaggtgttg TTGACCTAAA ATGAAGAAGC TGAGACACAA AATGTAATTT
 AAAGAGTTTA CTTGgaccag gtgctgtggc tcacgcctgt aatcccggca ctttgggagg
 ccgaggcggg cagatcacct gaggttagga gttcgagacc agcctggcca acatggtgaa
 acctcatctc tactaaaaaa aaaaaaaaaa aaaaaaaaat taactggatg tggtggtgca
 tgcctataat cccagctcct tgggaggctg aggtaggaga atcacctgaa cctgggaggc
 ggaggttgca gtgaaccaaa attgtgccac tccaacctgg gtgataaagt gagactcctt
 ctcaaaaaaa aaaaagagtt tacttgagct aaagtaaaga cagctgcgtg ggacacactt
 ccaagttgcc ttgggaagtg ctctactggc cttggttact ggcagggttt taaaggcaaa
 gggaacaagg agtgagctga tacaatgttg tttgacccga attctcactg gtttaagaga
 gaacaatgat ccactgatca ttggctatat attgttgaac tacagagtga gaatataagt
 tatggtgtcc agtatatggc atttatggat acttggcatc agtctaggga ccactagcaa
 gtggcttcaa gaagtaatta tttagctcaa gggggagtga gtcatgactg ttctgggcct
 gataattcga aggggctcac attcctcaga taaaaacctt ttttttTTTT CCCCCTTCTT
 AATgccagca tctggcaagg gccttcttgc tgcatcatca cttggtggaa gtggaaagag
 agggattgct tgcacacatg tctgagcatg tggacaCAAa agggggcaaa cctactccag
 ggataacaag ataagggcac tagtcccttc atgaaggtgg aacctcttaa atgcctctta
 ggccgggcgc ggtggctcac gcctgtaatc ccagcacttt gggaggctga ggcagacgga
 tcacctgtgg tcagaagttc gagaccatcc tggccaagat ggtgaaaccc
 Y
 gtctctacta acaatacaaa aattagccag gcatggtggc aggtgcctat gatcccagct
 actcaggagg gtgaggcagg agaatcgctt gaatccagga gacaaagttt gcagtgagct
 gagttcgcgc cactgcactc ctgcctgggt gacagagcga gactctgcct caggaaaaaa
 aaaaatgcct cttaatggtc ctacctccca atactgtcac agtggcaatt aaatgtcatc
 atgagctttg tgggggatag acaaatgttt agataatagc aCTTGGTAAT AGAGAGATGT
 TTATGGGCTG CCTGGAGATG ATGTAGCTGG AAAGCTTTTT TTTTTTTTCT TTTCTTACCA
 TCAACTGGGG AAACTGCCAC ATTCTTCCTC TTCCCACCTG ATGGCCCTGC TCTTGTGCTT
 TACTGAAACA AAAAACAAAC AAATAAAAAG CAATGATTCA CGTCATTATT GTAGTTTTTC
 C

  GeneView back to top
GeneView via analysis of contig annotation: GRK4 G protein-coupled receptor kinase 4
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_006081->NM_001004056
function
referenceNT_006081->NM_001004057
function
referenceNT_006081->NM_182982
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_006081->NM_001004056->NP_0010040561503762forwardintron
referenceNT_006081->NM_001004057->NP_0010040571503762forwardintron
referenceNT_006081->NM_182982->NP_8920271503762forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs2298966 maps exactly once on NCBI human chromosome 4
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
4NW_921918.129090102909010plusCalt_assembly_1CeleraCeleraview1730
4NW_001838896.28176322936502minusGalt_assembly_8HuRefHuRefview1730
4NT_006081.1815037622967908plusCref_assemblyreferencereferenceview1730

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
Z68273 AC091441 AL390065
dbSNP Blast Analysis
GenBank HTGS Finished:
AL390065.20 Z68273.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .