BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE2564
(112 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42528064|ref|NP_973162.1| PemK family protein [Treponema... 197 2e-49
gi|24215543|ref|NP_713024.1| chpK [Leptospira interrogans s... 92 1e-17
gi|45657077|ref|YP_001163.1| ChpK [Leptospira interrogans s... 91 2e-17
gi|15609128|ref|NP_216507.1| hypothetical protein Rv1991c [... 90 5e-17
gi|148264060|ref|YP_001230766.1| transcriptional modulator ... 81 2e-14
gi|23125794|ref|ZP_00107712.1| COG2337: Growth inhibitor [N... 80 3e-14
gi|148271993|ref|YP_001221554.1| putative growth inhibitor ... 74 2e-12
gi|126657536|ref|ZP_01728692.1| PemK family protein [Cyanot... 72 7e-12
gi|126658733|ref|ZP_01729878.1| PemK family protein [Cyanot... 72 9e-12
gi|150391834|ref|YP_001321883.1| transcriptional modulator ... 70 3e-11
gi|106895697|ref|ZP_01362774.1| growth inhibitor [Clostridi... 70 4e-11
gi|153876884|ref|ZP_02003975.1| PemK-like protein [Beggiato... 69 7e-11
gi|147677073|ref|YP_001211288.1| growth inhibitor [Pelotoma... 69 1e-10
gi|78043692|ref|YP_359570.1| regulatory protein, PemK famil... 69 1e-10
gi|126701084|ref|YP_001089981.1| putative regulator of cell... 67 2e-10
gi|113474484|ref|YP_720545.1| transcriptional modulator of ... 67 3e-10
gi|146296077|ref|YP_001179848.1| transcriptional modulator ... 67 3e-10
gi|115378004|ref|ZP_01465185.1| ChpK [Stigmatella aurantiac... 67 4e-10
gi|89896762|ref|YP_520249.1| hypothetical protein DSY4016 [... 65 8e-10
gi|73662118|ref|YP_300899.1| hypothetical protein SSP0809 [... 65 1e-09
gi|121535438|ref|ZP_01667248.1| transcriptional modulator o... 65 1e-09
gi|154500509|ref|ZP_02038547.1| hypothetical protein BACCAP... 65 2e-09
gi|10834755|gb|AAG23809.1|AF274004_1 unknown [Staphylococcu... 64 2e-09
gi|27468590|ref|NP_765227.1| hypothetical protein SE1672 [S... 64 2e-09
gi|89210546|ref|ZP_01188934.1| PemK-like protein [Halotherm... 64 3e-09
gi|70725964|ref|YP_252878.1| PemK family of DNA-binding pro... 64 3e-09
gi|134300727|ref|YP_001114223.1| transcriptional modulator ... 64 4e-09
gi|106885651|ref|ZP_01353008.1| PemK-like protein [Clostrid... 63 5e-09
gi|23098078|ref|NP_691544.1| hypothetical protein OB0623 [O... 62 7e-09
gi|83590988|ref|YP_430997.1| transcriptional modulator of M... 62 8e-09
gi|29375438|ref|NP_814592.1| transcriptional regulator, Pem... 62 1e-08
gi|125975181|ref|YP_001039091.1| transcriptional modulator ... 62 1e-08
gi|118727271|ref|ZP_01575877.1| transcriptional modulator o... 61 2e-08
gi|153814247|ref|ZP_01966915.1| hypothetical protein RUMTOR... 61 2e-08
gi|76796513|ref|ZP_00778873.1| PemK-like protein [Thermoana... 61 2e-08
gi|156868323|gb|EDO61695.1| hypothetical protein CLOLEP_020... 61 2e-08
gi|67922831|ref|ZP_00516330.1| PemK-like protein [Crocospha... 61 2e-08
gi|15893785|ref|NP_347134.1| PemK family of DNA-binding pro... 61 2e-08
gi|110803064|ref|YP_697615.1| PemK family protein [Clostrid... 61 2e-08
gi|18309277|ref|NP_561211.1| hypothetical protein CPE0295 [... 60 3e-08
gi|156862997|gb|EDO56428.1| hypothetical protein CLOL250_02... 60 3e-08
gi|20808550|ref|NP_623721.1| Growth inhibitor [Thermoanaero... 60 3e-08
gi|1729793|emb|CAA71064.1| unnamed protein product [Staphyl... 60 3e-08
gi|82751671|ref|YP_417412.1| hypothetical protein SAB1953c ... 60 3e-08
gi|116618900|ref|YP_819271.1| Toxin-antitoxin addiction mod... 60 3e-08
gi|15925058|ref|NP_372592.1| similar to pemK family of DNA-... 60 4e-08
gi|118443635|ref|YP_877349.1| pemK family of DNA-binding pr... 60 4e-08
gi|49484294|ref|YP_041518.1| hypothetical protein SAR2156 [... 60 6e-08
gi|154504833|ref|ZP_02041571.1| hypothetical protein RUMGNA... 60 6e-08
gi|153956176|ref|YP_001396941.1| Predicted transcriptional ... 59 6e-08
gi|69250347|ref|ZP_00605137.1| PemK-like protein [Enterococ... 59 7e-08
gi|154502762|ref|ZP_02039822.1| hypothetical protein RUMGNA... 59 7e-08
gi|116491611|ref|YP_811155.1| Toxin-antitoxin addiction mod... 59 1e-07
gi|118586393|ref|ZP_01543842.1| growth inhibitor [Oenococcu... 59 1e-07
gi|154483678|ref|ZP_02026126.1| hypothetical protein EUBVEN... 59 1e-07
gi|150019680|ref|YP_001311934.1| transcriptional modulator ... 58 2e-07
gi|124520613|ref|ZP_01695741.1| transcriptional modulator o... 58 2e-07
gi|148655568|ref|YP_001275773.1| transcriptional modulator ... 58 2e-07
gi|30018503|ref|NP_830134.1| PEMK-like protein [Bacillus ce... 58 2e-07
gi|153956427|ref|YP_001397192.1| Predicted transcriptional ... 58 2e-07
gi|28373997|pdb|1NE8|A Chain A, Ydce Protein From Bacillus ... 57 3e-07
gi|16077533|ref|NP_388347.1| hypothetical protein BSU04660 ... 57 3e-07
gi|153816434|ref|ZP_01969102.1| hypothetical protein RUMTOR... 57 3e-07
gi|116493285|ref|YP_805020.1| Toxin-antitoxin addiction mod... 57 4e-07
gi|153812756|ref|ZP_01965424.1| hypothetical protein RUMOBE... 57 5e-07
gi|89099498|ref|ZP_01172374.1| hypothetical protein B14911_... 57 5e-07
gi|56418768|ref|YP_146086.1| hypothetical protein GK0233 [G... 56 5e-07
gi|51894070|ref|YP_076761.1| growth inhibitor [Symbiobacter... 56 5e-07
gi|75760685|ref|ZP_00740711.1| MazF protein [Bacillus thuri... 56 5e-07
gi|28377410|ref|NP_784302.1| hypothetical protein lp_0524 [... 56 6e-07
gi|148381336|ref|YP_001255877.1| regulator of cell growth [... 56 6e-07
gi|126651484|ref|ZP_01723688.1| hypothetical protein BB1490... 56 7e-07
gi|94992601|ref|YP_600700.1| MazF protein [Streptococcus py... 55 9e-07
gi|81429223|ref|YP_396224.1| Putative DNA-binding protein, ... 55 1e-06
gi|149183255|ref|ZP_01861699.1| hypothetical protein BSG1_2... 55 1e-06
gi|108758430|ref|YP_629911.1| PemK family protein [Myxococc... 55 1e-06
gi|126647862|ref|ZP_01720367.1| hypothetical protein ALPR1_... 55 1e-06
gi|16799960|ref|NP_470228.1| hypothetical protein lin0887 [... 55 1e-06
gi|153869928|ref|ZP_01999434.1| PemK-like protein [Beggiato... 55 1e-06
gi|52079001|ref|YP_077792.1| putative plasmid maintenance t... 55 2e-06
gi|15613085|ref|NP_241388.1| hypothetical protein BH0522 [B... 54 2e-06
gi|56962583|ref|YP_174309.1| growth inhibitor [Bacillus cla... 54 2e-06
gi|111225278|ref|YP_716072.1| hypothetical protein FRAAL592... 54 2e-06
gi|77380204|gb|ABA71736.1| pemK-like protein [Enterococcus ... 54 2e-06
gi|78058369|gb|ABB17548.1| ORFG2-27 [Enterococcus faecalis] 54 3e-06
gi|16802929|ref|NP_464414.1| hypothetical protein lmo0888 [... 54 3e-06
gi|29375414|ref|NP_814568.1| transcriptional regulator, Pem... 54 4e-06
gi|116872290|ref|YP_849071.1| PemK family transcriptional r... 54 4e-06
gi|134097900|ref|YP_001103561.1| hypothetical protein SACE_... 53 4e-06
gi|47092096|ref|ZP_00229889.1| transcriptional regulator, P... 53 5e-06
gi|116495989|ref|YP_807723.1| Toxin-antitoxin addiction mod... 53 6e-06
gi|94266675|ref|ZP_01290351.1| chpK [delta proteobacterium ... 53 6e-06
gi|68056476|ref|ZP_00540594.1| PemK-like protein [Exiguobac... 52 8e-06
gi|94266580|ref|ZP_01290264.1| chpK [delta proteobacterium ... 52 8e-06
gi|90961340|ref|YP_535256.1| Transcriptional regulator, Pem... 52 9e-06
>gi|42528064|ref|NP_973162.1| PemK family protein [Treponema denticola ATCC 35405]
gi|41819109|gb|AAS13081.1| PemK family protein [Treponema denticola ATCC 35405]
Length = 112
Score = 197 bits (500), Expect = 2e-49, Method: Composition-based stats.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF
Sbjct: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLKE 112
IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLKE
Sbjct: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLKE 112
>gi|24215543|ref|NP_713024.1| chpK [Leptospira interrogans serovar Lai str. 56601]
gi|15042701|gb|AAK82420.1|AF395875_2 ChpK [Leptospira interrogans]
gi|24196686|gb|AAN50042.1|AE011449_11 chpK [Leptospira interrogans serovar Lai str. 56601]
Length = 113
Score = 91.7 bits (226), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/103 (46%), Positives = 69/103 (66%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
M RG+++ +D GIP GSEPG +RPV+IIQ D N +++NT + + +TSN +E GNVF
Sbjct: 1 MIRGEIWWVDLGIPFGSEPGFKRPVLIIQDDSFNQSNINTIVSIAITSNLNLSEAPGNVF 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIE 103
I K +S L K+SV V QI+ +DK R K GK+ + L ++E
Sbjct: 61 ISKKDSSLSKDSVINVSQIVTLDKERFLNKAGKLKSNKLGEVE 103
>gi|45657077|ref|YP_001163.1| ChpK [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|45600314|gb|AAS69800.1| ChpK [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 106
Score = 90.9 bits (224), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/103 (46%), Positives = 69/103 (66%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
M RG+++ +D GIP GSEPG +RPV+IIQ D N +++NT + + +TSN +E GNVF
Sbjct: 1 MIRGEIWWVDLGIPFGSEPGFKRPVLIIQDDSFNQSNINTIVSIAITSNLNLSEAPGNVF 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIE 103
I K +S L K+SV V QI+ +DK R K GK+ + L ++E
Sbjct: 61 ISKKDSSLSKDSVINVSQIVTLDKERFLNKAGKLKSNKLGKVE 103
>gi|15609128|ref|NP_216507.1| hypothetical protein Rv1991c [Mycobacterium tuberculosis H37Rv]
gi|15841472|ref|NP_336509.1| hypothetical protein MT2046 [Mycobacterium tuberculosis CDC1551]
gi|31793171|ref|NP_855664.1| hypothetical protein Mb2014c [Mycobacterium bovis AF2122/97]
gi|81254187|ref|ZP_00878714.1| COG2337: Growth inhibitor [Mycobacterium tuberculosis C]
gi|121637875|ref|YP_978098.1| hypothetical protein BCG_2008c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661804|ref|YP_001283327.1| hypothetical protein MRA_2006 [Mycobacterium tuberculosis H37Ra]
gi|148823206|ref|YP_001287960.1| hypothetical protein TBFG_12023 [Mycobacterium tuberculosis F11]
gi|54040424|sp|P64912|Y2014_MYCBO Hypothetical protein Mb2014c
gi|54042561|sp|P64911|Y1991_MYCTU Uncharacterized protein Rv1991c/MT2046
gi|1403464|emb|CAA98393.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13881712|gb|AAK46323.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|31618763|emb|CAD96867.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493522|emb|CAL71996.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601223|gb|EAY60233.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134150324|gb|EBA42369.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148505956|gb|ABQ73765.1| hypothetical protein MRA_2006 [Mycobacterium tuberculosis H37Ra]
gi|148721733|gb|ABR06358.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
Length = 114
Score = 89.7 bits (221), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 73/110 (66%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
++R ++Y D G P+GS+P RRPV++IQSD N + L T I +TSNT A + GNVF
Sbjct: 3 ISRAEIYWADLGPPSGSQPAKRRPVLVIQSDPYNASRLATVIAAVITSNTALAAMPGNVF 62
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+P ++LP++SV V I+ ++K+ L ++VG+V ++ ++++ + VL
Sbjct: 63 LPATTTRLPRDSVVNVTAIVTLNKTDLTDRVGEVPASLMHEVDRGLRRVL 112
>gi|148264060|ref|YP_001230766.1| transcriptional modulator of MazE/toxin, MazF [Geobacter
uraniumreducens Rf4]
gi|146397560|gb|ABQ26193.1| transcriptional modulator of MazE/toxin, MazF [Geobacter
uraniumreducens Rf4]
Length = 118
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 67/110 (60%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ +GD+Y ++ P GSEPG + P +I+Q++ N + + T +V PLT+N A GNV
Sbjct: 3 INQGDIYWIELDEPEGSEPGYKHPHVIVQNNLFNRSQIRTVLVCPLTTNLKRASAPGNVL 62
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ K ES LPK SV V Q+ VDK++L+E VG +S + +I I VL
Sbjct: 63 LDKKESNLPKQSVVNVTQVFTVDKAQLDEYVGTLSSKRITEILNGIKLVL 112
>gi|23125794|ref|ZP_00107712.1| COG2337: Growth inhibitor [Nostoc punctiforme PCC 73102]
Length = 119
Score = 80.5 bits (197), Expect = 3e-14, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE RPVII+Q D+ T +VVPLT+N A + G + IP
Sbjct: 2 RGDVYLADLNPSRGSEQAGIRPVIIVQRDRL-AQFTTTSVVVPLTTNLRRAIIPGTIVIP 60
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLK 111
E L ++SV L +QI+V+D+ RL K+G +S + LL ++ +DY L+
Sbjct: 61 SGEGGLTQDSVVLSYQIVVIDRQRLIRKLGTLSPNYLLMLKVALDYTLQ 109
>gi|148271993|ref|YP_001221554.1| putative growth inhibitor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829923|emb|CAN00848.1| putative growth inhibitor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 114
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV +DFG P GSEP RP ++IQ D N + + T +++P TS GNVF
Sbjct: 2 IARGDVVWVDFGAPRGSEPAKIRPSLVIQDDWLNESGVATIVLIPFTSQVRLQAFPGNVF 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLE-EKVGKVSKHILLQIEQEIDYVL 110
IP S L K+SVA+V QI V + +E VG + +++ ++ + +L
Sbjct: 62 IPAAASGLDKDSVAVVPQIGPVSREFIEPHPVGHLPGYLMAEVSAAVRLLL 112
>gi|126657536|ref|ZP_01728692.1| PemK family protein [Cyanothece sp. CCY0110]
gi|126621240|gb|EAZ91953.1| PemK family protein [Cyanothece sp. CCY0110]
Length = 118
Score = 72.4 bits (176), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 64/109 (58%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
+G++Y +D G P GSEP RP +++Q++ N + + T IV LT+N A GNV +
Sbjct: 5 QGEIYWIDLGQPIGSEPAYLRPCVVVQNNILNQSKIGTVIVCALTTNLRRARAIGNVLLN 64
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLK 111
+ E+ LP+ SV + QI VDK L + VG++S+ + +I I L+
Sbjct: 65 EEEANLPEKSVVNISQIFTVDKRLLSDPVGRLSEERINEIISGIKLALE 113
>gi|126658733|ref|ZP_01729878.1| PemK family protein [Cyanothece sp. CCY0110]
gi|126619995|gb|EAZ90719.1| PemK family protein [Cyanothece sp. CCY0110]
Length = 115
Score = 72.0 bits (175), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIV-VPLTSNTVNAELKGNV 59
+ RG++++ GSE RPVII Q + ++ T I+ +PLT+N + L +
Sbjct: 3 IERGEIWVATLDPTQGSEQAGIRPVIIFQEN--TISQFTTTIISIPLTTNLRRSSLPSCL 60
Query: 60 FIPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
FIP+NE L ++SVAL HQ+ V+DK+RL K+GK+S + + Q+E + + L
Sbjct: 61 FIPQNEGGLNQDSVALCHQLRVLDKTRLRRKLGKLSLNTINQLESIVLFTL 111
>gi|150391834|ref|YP_001321883.1| transcriptional modulator of MazE/toxin, MazF [Alkaliphilus
metalliredigens QYMF]
gi|149951696|gb|ABR50224.1| transcriptional modulator of MazE/toxin, MazF [Alkaliphilus
metalliredigens QYMF]
Length = 116
Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV+IIQ+D N S T IV +TS A+L ++
Sbjct: 3 VKRGDIYYADLSPVIGSEQGGVRPVLIIQNDIGNRYS-PTVIVAAITSQINKAKLPTHIE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++ LPK+SV L+ QI +DK RLEEKVG + +++++ + +
Sbjct: 62 ITASDYGLPKDSVVLLEQIRTIDKRRLEEKVGHFDEEMMIKVNEAL 107
>gi|106895697|ref|ZP_01362774.1| growth inhibitor [Clostridium sp. OhILAs]
gi|106773007|gb|EAT29614.1| growth inhibitor [Clostridium sp. OhILAs]
Length = 116
Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+IIQ+D N S T IVV +TS A+L +V
Sbjct: 3 IKRGDIFYADLSPVIGSEQGGVRPVLIIQNDIGNRYS-PTIIVVAITSQINKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++ LPK+SV L+ QI +DK RLEEKVG V+ I+ ++ + +
Sbjct: 62 IKSSDYGLPKDSVLLLEQIRTIDKRRLEEKVGHVTDDIMEKVNEAL 107
>gi|153876884|ref|ZP_02003975.1| PemK-like protein [Beggiatoa sp. PS]
gi|152066651|gb|EDN66024.1| PemK-like protein [Beggiatoa sp. PS]
Length = 117
Score = 69.3 bits (168), Expect = 7e-11, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIV-VPLTSNTVNAELKGNVFI 61
RG++++ + GSE RPV+I Q+D LN L T ++ +P+T+N A L + I
Sbjct: 5 RGEIWLAELNPTRGSEQAGTRPVLIFQNDL--LNPLTTTVLAIPMTTNLRRALLSSCLQI 62
Query: 62 PKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIE 103
K E L +SVAL HQ V+DK+RL+ K+G V+ + IE
Sbjct: 63 SKGEGGLASDSVALCHQFRVLDKTRLQHKLGSVTPQTIAAIE 104
>gi|147677073|ref|YP_001211288.1| growth inhibitor [Pelotomaculum thermopropionicum SI]
gi|146273170|dbj|BAF58919.1| growth inhibitor [Pelotomaculum thermopropionicum SI]
Length = 116
Score = 68.6 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD+Y D GSE G RPV+IIQ+D N S T IV +TS +L +V +P
Sbjct: 5 RGDIYYADLSPVVGSEQGGTRPVLIIQNDIGNQYS-PTTIVAAITSQIDKPKLPTHVAMP 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ L KNSV L+ QI +DKSRL EKV + ++ ++ Q I+ L
Sbjct: 64 ASPGGLEKNSVILLEQIRTIDKSRLMEKVTALDSEMMARVNQAIEISL 111
>gi|78043692|ref|YP_359570.1| regulatory protein, PemK family [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995807|gb|ABB14706.1| regulatory protein, PemK family [Carboxydothermus hydrogenoformans
Z-2901]
Length = 116
Score = 68.6 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ + GSE G RPV+I+Q+D NL S T I+ +TS A+L +V I
Sbjct: 5 RGDIFYANLSPVVGSEQGGTRPVLILQNDIGNLYS-PTTIIAAITSQINKAKLPTHVEIS 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
ES L K+SV L+ QI +DKSRL+EKV ++K ++ ++ Q ++ L
Sbjct: 64 AEESGLEKDSVILLEQIRTIDKSRLKEKVSSLNKELMRKVNQALEISL 111
>gi|126701084|ref|YP_001089981.1| putative regulator of cell growth [Clostridium difficile 630]
gi|145952615|ref|ZP_01801624.1| hypothetical protein CdifQ_04003991 [Clostridium difficile
QCD-32g58]
gi|115252521|emb|CAJ70364.1| putative regulator of cell growth [Clostridium difficile 630]
Length = 120
Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV+IIQ+D N S T IV +TS A+L +V
Sbjct: 7 IKRGDLYYADLSPVVGSEQGGVRPVLIIQNDVGNKYS-PTVIVSAITSQINKAKLPTHVE 65
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIE 103
I NE L K+SV L+ QI +DK RL EK+G + ++++++++
Sbjct: 66 ISSNEYGLNKDSVILLEQIRTIDKKRLREKIGCLDENMMIKVD 108
>gi|113474484|ref|YP_720545.1| transcriptional modulator of MazE/toxin, MazF [Trichodesmium
erythraeum IMS101]
gi|110165532|gb|ABG50072.1| transcriptional modulator of MazE/toxin, MazF [Trichodesmium
erythraeum IMS101]
Length = 119
Score = 67.4 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 66/111 (59%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ +GD++ ++ G P+GS+ R P ++IQ++ N + +NT +V L SN A + GN+
Sbjct: 3 INQGDIFWIELGEPSGSKTSYRHPHVVIQNNVFNFSLINTVVVCSLGSNLKLAAVPGNIV 62
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLK 111
+ E+ LP V + QI V+K++L +K+G +S + QI ++ +LK
Sbjct: 63 LSLGEANLPDQRVVNISQIFTVEKAKLIDKIGTLSPERIEQILNGVELLLK 113
>gi|146296077|ref|YP_001179848.1| transcriptional modulator of MazE/toxin, MazF [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409653|gb|ABP66657.1| transcriptional modulator of MazE/toxin, MazF [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 145
Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV++IQ+D N S T IV +TS A+ +V
Sbjct: 14 IKRGDIFYADLAPHVGSEQGGIRPVLVIQNDIGNKYS-PTVIVAAITSQIGKAKFPTHVE 72
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I E L K+SV L+ QI +DK RL+ KVGK+S ++ ++ Q I
Sbjct: 73 IHAGEFGLTKDSVILLEQIRTIDKIRLKNKVGKLSDEVMEKVNQAI 118
>gi|115378004|ref|ZP_01465185.1| ChpK [Stigmatella aurantiaca DW4/3-1]
gi|115364981|gb|EAU64035.1| ChpK [Stigmatella aurantiaca DW4/3-1]
Length = 131
Score = 66.6 bits (161), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV+ + G P P +++Q D N + + T +V LTSN A GNV
Sbjct: 16 INRGDVFWIGPDDSRGPVPAYSHPHVVVQEDVFNHSRITTVVVCALTSNLHRANEPGNVL 75
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQI 102
+ E LPK SV +V QI VDK+RL E++G +S + QI
Sbjct: 76 LEVGEGNLPKQSVVVVSQIASVDKARLGERIGSLSGARVEQI 117
>gi|89896762|ref|YP_520249.1| hypothetical protein DSY4016 [Desulfitobacterium hafniense Y51]
gi|109649413|ref|ZP_01373298.1| transcriptional modulator of MazE/toxin, MazF [Desulfitobacterium
hafniense DCB-2]
gi|89336210|dbj|BAE85805.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109639465|gb|EAT49024.1| transcriptional modulator of MazE/toxin, MazF [Desulfitobacterium
hafniense DCB-2]
Length = 116
Score = 65.5 bits (158), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RG++Y + GSE G RPV++IQ+D N S T I+ +TS A+L +V
Sbjct: 3 IKRGEIYYAELNPVVGSEQGGTRPVLVIQNDIGNQFS-PTTIIAAITSQIAKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ S L ++SV L QI +DKSRL+EKV + + ++L+++Q I+ L
Sbjct: 62 VRAKRSGLERDSVILTEQIRTIDKSRLKEKVAVLDEEVMLRVDQAIEISL 111
>gi|73662118|ref|YP_300899.1| hypothetical protein SSP0809 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494633|dbj|BAE17954.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 120
Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
M RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V
Sbjct: 2 MRRGDVYLADLSPVQGSEQGGIRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVE 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I K++ +L K+SV L+ QI +DK+RL+EK+ +S + ++ ID L
Sbjct: 61 IEKSKYKLDKDSVILLEQIRTLDKNRLKEKLTYLSDKKMKEVNNAIDISL 110
>gi|121535438|ref|ZP_01667248.1| transcriptional modulator of MazE/toxin, MazF [Thermosinus
carboxydivorans Nor1]
gi|121305947|gb|EAX46879.1| transcriptional modulator of MazE/toxin, MazF [Thermosinus
carboxydivorans Nor1]
Length = 116
Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y + GSE G RPV+IIQ+D N S T IV +TS A+L +V
Sbjct: 3 VKRGDIYYANLSPVVGSEQGGHRPVLIIQNDVGNKYS-PTVIVAAITSQISKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I + L K+SV L+ Q+ +DK RL+EKV +S+ I++++++ I
Sbjct: 62 ISAKQFSLDKDSVVLLEQLRTIDKRRLKEKVTHLSEDIMVKVDEAI 107
>gi|154500509|ref|ZP_02038547.1| hypothetical protein BACCAP_04182 [Bacteroides capillosus ATCC
29799]
gi|150270740|gb|EDM98036.1| hypothetical protein BACCAP_04182 [Bacteroides capillosus ATCC
29799]
Length = 121
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPV+I+Q+D N +S T I +TS T A L ++ I
Sbjct: 7 RGDIFYADLSPVVGSEQGGVRPVLIVQNDTGNRHS-PTVIAAAITSQTGKARLPTHIDIS 65
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
LPK+SV L+ QI +DK RL E +G++ + + +++ I
Sbjct: 66 ARSYGLPKDSVVLLEQIRTLDKKRLREHMGRLDETQMQRVDNAI 109
>gi|10834755|gb|AAG23809.1|AF274004_1 unknown [Staphylococcus epidermidis]
Length = 120
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V I
Sbjct: 4 RGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITDGINKAKIPTHVEIE 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
K + +L K+SV L+ QI +DK RL+EK+ +S+ +++++ +D L
Sbjct: 63 KKKYKLDKDSVILLEQIRTLDKKRLKEKLTFLSESKMIEVDNALDISL 110
>gi|27468590|ref|NP_765227.1| hypothetical protein SE1672 [Staphylococcus epidermidis ATCC 12228]
gi|57867591|ref|YP_189246.1| transcriptional regulator, PemK family [Staphylococcus epidermidis
RP62A]
gi|27316137|gb|AAO05271.1|AE016749_217 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57638249|gb|AAW55037.1| transcriptional regulator, PemK family [Staphylococcus epidermidis
RP62A]
Length = 120
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V I
Sbjct: 4 RGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVEIE 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
K + +L K+SV L+ QI +DK RL+EK+ +S+ +++++ +D L
Sbjct: 63 KKKYKLDKDSVILLEQIRTLDKKRLKEKLTFLSESKMIEVDNALDISL 110
>gi|89210546|ref|ZP_01188934.1| PemK-like protein [Halothermothrix orenii H 168]
gi|89159808|gb|EAR79468.1| PemK-like protein [Halothermothrix orenii H 168]
Length = 116
Score = 63.9 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+TRGDV+ D GSE G RPV+IIQ+D N S T IV +TS A+L +V
Sbjct: 3 VTRGDVFYADLNPVVGSEQGGVRPVLIIQNDIGNKYS-PTVIVAAITSKINKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I +ES L K+SV L+ QI +DK RL+ V + I+ ++++ I+ L
Sbjct: 62 IAASESNLEKDSVILLEQIRTIDKKRLQRHVTHLDNGIIEKVDEAIEISL 111
>gi|70725964|ref|YP_252878.1| PemK family of DNA-binding protein [Staphylococcus haemolyticus
JCSC1435]
gi|68446688|dbj|BAE04272.1| PemK family of DNA-binding protein [Staphylococcus haemolyticus
JCSC1435]
Length = 121
Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V I
Sbjct: 4 RGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVEIE 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
K + +L K+SV L+ QI +DK RL+EK+ +S + ++++ +D L
Sbjct: 63 KKKYRLDKDSVILLEQIRTLDKKRLKEKLTYLSDEKMQEVDEALDISL 110
>gi|134300727|ref|YP_001114223.1| transcriptional modulator of MazE/toxin, MazF [Desulfotomaculum
reducens MI-1]
gi|134053427|gb|ABO51398.1| transcriptional modulator of MazE/toxin, MazF [Desulfotomaculum
reducens MI-1]
Length = 116
Score = 63.5 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDV+ D GSE G RPV+I+Q+D N S T I+ +TS A+L +V I
Sbjct: 5 RGDVFYADLSPVVGSEQGGIRPVLILQNDIGNQYS-PTTIIAAITSQIAKAKLPTHVEIQ 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
ES L K+SV L+ Q+ +DKSRL EKV ++ + ++ + ++ L
Sbjct: 64 AKESGLEKDSVVLLEQLRTIDKSRLFEKVSSLNNDFMNKVNRAVEISL 111
>gi|106885651|ref|ZP_01353008.1| PemK-like protein [Clostridium phytofermentans ISDg]
gi|106766894|gb|EAT23616.1| PemK-like protein [Clostridium phytofermentans ISDg]
Length = 122
Score = 63.2 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+IIQ+D N +S T I +TS A+L +V
Sbjct: 10 IKRGDIFYADLRPVIGSEQGGVRPVLIIQNDTGNKHS-PTVICAAITSKMNKAKLPTHVE 68
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++ + K+SV L+ Q+ +DKSRL+EKV + + IL +I++ +
Sbjct: 69 IDADKYGIVKDSVILLEQVRTIDKSRLKEKVCHLDQDILKRIDKAL 114
>gi|23098078|ref|NP_691544.1| hypothetical protein OB0623 [Oceanobacillus iheyensis HTE831]
gi|22776303|dbj|BAC12579.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 119
Score = 62.4 bits (150), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RG+VY D GSE G RPV+I+Q+D N S T IV +T+ A+L +V
Sbjct: 3 VQRGEVYFADLSPVVGSEQGGVRPVLILQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I +NSV L+ QI +DK RL +K+ K+ K ++++I Q ++ L
Sbjct: 62 IDAKRYGFDRNSVILLEQIRTLDKQRLTDKITKLDKEMMIKINQALEISL 111
>gi|83590988|ref|YP_430997.1| transcriptional modulator of MazE/toxin, MazF [Moorella
thermoacetica ATCC 39073]
gi|83573902|gb|ABC20454.1| transcriptional modulator of MazE/toxin, MazF [Moorella
thermoacetica ATCC 39073]
Length = 116
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDV+ GSE G RPV+IIQ+D N S T IV +TS A+L +V I
Sbjct: 5 RGDVFYAHLNPVVGSEQGGTRPVLIIQNDIGNQYS-PTTIVAAITSQIAKAKLPTHVEIS 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+S L ++SV L+ QI +DKSRL++KV + IL ++ + ++ L
Sbjct: 64 AAKSGLERDSVILLEQIRTIDKSRLKQKVAVLDDEILEKVNRALEISL 111
>gi|29375438|ref|NP_814592.1| transcriptional regulator, PemK family [Enterococcus faecalis V583]
gi|29342898|gb|AAO80662.1| transcriptional regulator, PemK family [Enterococcus faecalis V583]
Length = 125
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV+++Q++ N S T IV +T+ +L ++
Sbjct: 2 VKRGDIYFADLSPVVGSEQGGVRPVLVVQNNLGNHFS-PTIIVAAITAKMAKPKLPTHIG 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I +E+ + K+SV L+ QI +DK RL+EKV H+ L I +E+D L
Sbjct: 61 INSDETGIEKDSVILLEQIRTIDKGRLKEKVC----HLRLDIMEEVDRAL 106
>gi|125975181|ref|YP_001039091.1| transcriptional modulator of MazE/toxin, MazF [Clostridium
thermocellum ATCC 27405]
gi|125715406|gb|ABN53898.1| transcriptional modulator of MazE/toxin, MazF [Clostridium
thermocellum ATCC 27405]
Length = 116
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+I+Q+D N S T I +TS A+L ++
Sbjct: 3 IKRGDIFYADLSPVIGSEQGGIRPVLIVQNDIGNKYS-PTVIASAITSQINKAKLPTHIE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ E LPK+SV L+ QI +DK RL EK+G + ++ ++ + +
Sbjct: 62 LSAKEYGLPKDSVVLLEQIRTIDKKRLREKIGHLDDELMEKVNEAL 107
>gi|118727271|ref|ZP_01575877.1| transcriptional modulator of MazE/toxin, MazF [Clostridium
cellulolyticum H10]
gi|118663329|gb|EAV69984.1| transcriptional modulator of MazE/toxin, MazF [Clostridium
cellulolyticum H10]
Length = 116
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV+I+Q+D N S T I +TS A+L ++
Sbjct: 3 IKRGDIYYADLSPVIGSEQGGVRPVLIVQNDVGNKYS-PTVIAAAITSQINKAKLPTHIE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQ--EIDYVLKE 112
I E L K+SV L+ QI +DK RL EK+G + ++ ++ E+ + L E
Sbjct: 62 IGALEYGLAKDSVILLEQIRTIDKKRLREKIGHLDDELMTEVNNALEVSFGLSE 115
>gi|153814247|ref|ZP_01966915.1| hypothetical protein RUMTOR_00456 [Ruminococcus torques ATCC 27756]
gi|145848643|gb|EDK25561.1| hypothetical protein RUMTOR_00456 [Ruminococcus torques ATCC 27756]
Length = 120
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAE-LKGNVFI 61
RGD+Y +DFG AGSE G RP +++ ++K N +S V+PL++ + L +V I
Sbjct: 4 RGDIYYVDFGEKAGSEQGGVRPALVVSNNKANKHS-PVVTVIPLSARVWKKKYLPTHVQI 62
Query: 62 P-KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQ 101
P K S L K S+AL Q+ +DK+RL E++G+V ++++
Sbjct: 63 PLKKSSGLNKPSMALAEQVETLDKTRLGERIGEVLDDMVME 103
>gi|76796513|ref|ZP_00778873.1| PemK-like protein [Thermoanaerobacter ethanolicus ATCC 33223]
gi|114844174|ref|ZP_01454628.1| PemK-like protein [Thermoanaerobacter ethanolicus X514]
gi|76588095|gb|EAO64507.1| PemK-like protein [Thermoanaerobacter ethanolicus ATCC 33223]
gi|114805754|gb|EAU57541.1| PemK-like protein [Thermoanaerobacter ethanolicus X514]
Length = 116
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+IIQ+D N S T IV +TS A+L +V
Sbjct: 3 IKRGDIFYADLSPVIGSEQGGIRPVLIIQNDIGNKYS-PTVIVAAITSQINKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I E L K+SV L+ QI +DK RL EK+G + ++ ++ + + L
Sbjct: 62 INGAEYGLNKDSVVLLEQIRTIDKKRLREKIGHFDQEMMEKVNEALQISL 111
>gi|156868323|gb|EDO61695.1| hypothetical protein CLOLEP_02095 [Clostridium leptum DSM 753]
Length = 125
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+I+Q++ N S T I +TS A L ++
Sbjct: 6 IKRGDIFYADLSPVVGSEQGGIRPVLIVQNNVGNRFS-PTVIAAAITSQKSKANLPTHIQ 64
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ N+S L ++SV L+ QI +DK RL+EK+G ++ + + Q+++ +
Sbjct: 65 LRANDSGLSRDSVVLLEQIRTLDKRRLKEKMGTLNPYSMHQVDEAL 110
>gi|67922831|ref|ZP_00516330.1| PemK-like protein [Crocosphaera watsonii WH 8501]
gi|67855324|gb|EAM50584.1| PemK-like protein [Crocosphaera watsonii WH 8501]
Length = 114
Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y + GSE G RPVII Q + + + + LT+N L +
Sbjct: 3 IERGDIYTGNLSPIQGSEQGGIRPVIIFQKNTISQFTTTIITIP-LTTNLKRISLPSCLL 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
IP+NE L ++SVAL HQ+ V+DK+RL K+G++S I+ QIE + + L
Sbjct: 62 IPQNEGGLNQDSVALCHQLRVLDKARLVRKIGRLSPKIIDQIENIVLFTL 111
>gi|15893785|ref|NP_347134.1| PemK family of DNA-binding proteins [Clostridium acetobutylicum
ATCC 824]
gi|15023355|gb|AAK78474.1|AE007564_2 PemK family of DNA-binding proteins [Clostridium acetobutylicum
ATCC 824]
Length = 122
Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPVIIIQ+D N S T IV +TS A+L +V I
Sbjct: 7 RGDIFYADLSPVVGSEQGGIRPVIIIQNDMGNKYS-PTVIVAAITSQINKAKLPTHVEIS 65
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ L K+SV L+ QI +DK RL+EK+G ++ + ++++ +
Sbjct: 66 SEDYGLNKDSVVLLEQIRTLDKRRLKEKIGHMTDMDMKKVDEAL 109
>gi|110803064|ref|YP_697615.1| PemK family protein [Clostridium perfringens SM101]
gi|110683565|gb|ABG86935.1| PemK family protein [Clostridium perfringens SM101]
Length = 117
Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPVIIIQ+D N S T IV +TS A+L +V
Sbjct: 6 VKRGDIFYADLSPVVGSEQGGIRPVIIIQNDIGNRYS-PTVIVAAITSQINKAKLPTHVE 64
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I E L ++SV L+ QI +DK RL+EK+G +++ + ++ + +
Sbjct: 65 ISSEEYGLNRDSVVLLEQIRTLDKKRLKEKIGHMTEEDMKKVNKSL 110
>gi|18309277|ref|NP_561211.1| hypothetical protein CPE0295 [Clostridium perfringens str. 13]
gi|110799555|ref|YP_694751.1| PemK family protein [Clostridium perfringens ATCC 13124]
gi|18143953|dbj|BAB80001.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110674202|gb|ABG83189.1| PemK family protein [Clostridium perfringens ATCC 13124]
Length = 117
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPVIIIQ+D N S T IV +TS A+L +V
Sbjct: 6 VKRGDIFYADLSPVVGSEQGGIRPVIIIQNDIGNRYS-PTVIVAAITSQINKAKLPTHVE 64
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I E L ++SV L+ QI +DK RL+EK+G +++ + ++ + +
Sbjct: 65 ISSEEYGLNRDSVVLLEQIRTLDKKRLKEKIGHMTEDDMKKVNKSL 110
>gi|156862997|gb|EDO56428.1| hypothetical protein CLOL250_02863 [Clostridium sp. L2-50]
Length = 114
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPV+IIQ++ N +S +T I +TS A+L +V I
Sbjct: 5 RGDIFYADLRPVVGSEQGGVRPVLIIQNEAGNKHS-STVICAAITSKMNKAKLPTHVEID 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIE 103
+ L K+SV L+ Q+ +DK RL+EKV + IL +++
Sbjct: 64 SSRYDLAKDSVVLLEQVRTIDKQRLKEKVCHMGDDILKKVD 104
>gi|20808550|ref|NP_623721.1| Growth inhibitor [Thermoanaerobacter tengcongensis MB4]
gi|20517176|gb|AAM25325.1| Growth inhibitor [Thermoanaerobacter tengcongensis MB4]
Length = 118
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPV+IIQ+D N S T IV +TS A+L +V I
Sbjct: 7 RGDLFYADLSPVIGSEQGGIRPVLIIQNDIGNKYS-PTVIVAAITSQINKAKLPTHVEIN 65
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
E L K+SV L+ QI +DK RL EK+G + + ++ ++ + + L
Sbjct: 66 GAEYGLQKDSVILLEQIRTIDKKRLREKIGHLDQEMMEKVNEALQISL 113
>gi|1729793|emb|CAA71064.1| unnamed protein product [Staphylococcus aureus subsp. aureus COL]
Length = 136
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V I
Sbjct: 4 RGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVEIE 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
K + +L K+SV L+ QI +DK RL+EK+ +S + +++ +
Sbjct: 63 KKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNAL 106
>gi|82751671|ref|YP_417412.1| hypothetical protein SAB1953c [Staphylococcus aureus RF122]
gi|82657202|emb|CAI81642.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 117
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V
Sbjct: 2 IRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVE 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I K + +L K+SV L+ QI +DK RL+EK+ +S + +++ +
Sbjct: 61 IEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNAL 106
>gi|116618900|ref|YP_819271.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097747|gb|ABJ62898.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 121
Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV+ D GSE RPV+IIQ+D N NS T IV +TS +L +V
Sbjct: 8 VMRGDVFYADLKQGIGSEQAGVRPVLIIQNDVGNANS-PTTIVAAITSQISKPKLPTHVL 66
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVS 95
+P++ S + ++SV L Q+ +DK RL +K+ ++
Sbjct: 67 LPEHMSGMKRDSVILAEQVRTIDKRRLRDKIAHIN 101
>gi|15925058|ref|NP_372592.1| similar to pemK family of DNA-binding proteins [Staphylococcus
aureus subsp. aureus Mu50]
gi|15927643|ref|NP_375176.1| hypothetical protein SA1873 [Staphylococcus aureus subsp. aureus
N315]
gi|21283721|ref|NP_646809.1| hypothetical protein MW1992 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486862|ref|YP_044083.1| hypothetical protein SAS1973 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650740|ref|YP_186874.1| PemK family protein [Staphylococcus aureus subsp. aureus COL]
gi|87161920|ref|YP_494672.1| PemK family protein [Staphylococcus aureus subsp. aureus USA300]
gi|88195969|ref|YP_500782.1| hypothetical protein SAOUHSC_02303 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268520|ref|YP_001247463.1| transcriptional modulator of MazE/toxin, MazF [Staphylococcus
aureus subsp. aureus JH9]
gi|150394584|ref|YP_001317259.1| PemK family protein [Staphylococcus aureus subsp. aureus JH1]
gi|151222186|ref|YP_001333008.1| PemK family of DNA-binding protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156980384|ref|YP_001442643.1| hypothetical protein SAHV_2053 [Staphylococcus aureus subsp. aureus
Mu3]
gi|1934987|emb|CAA68928.1| ORF1 [Staphylococcus aureus]
gi|13701863|dbj|BAB43155.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247841|dbj|BAB58230.1| similar to pemK family of DNA-binding protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|21205163|dbj|BAB95857.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49245305|emb|CAG43780.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284926|gb|AAW37020.1| PemK family protein [Staphylococcus aureus subsp. aureus COL]
gi|87127894|gb|ABD22408.1| PemK family protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203527|gb|ABD31337.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741589|gb|ABQ49887.1| transcriptional modulator of MazE/toxin, MazF [Staphylococcus
aureus subsp. aureus JH9]
gi|149947036|gb|ABR52972.1| PemK family protein [Staphylococcus aureus subsp. aureus JH1]
gi|150374986|dbj|BAF68246.1| PemK family of DNA-binding protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722519|dbj|BAF78936.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
Length = 120
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V I
Sbjct: 4 RGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVEIE 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
K + +L K+SV L+ QI +DK RL+EK+ +S + +++ +
Sbjct: 63 KKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNAL 106
>gi|118443635|ref|YP_877349.1| pemK family of DNA-binding proteins [Clostridium novyi NT]
gi|118134091|gb|ABK61135.1| pemK family of DNA-binding proteins [Clostridium novyi NT]
Length = 126
Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+IIQ++ N S T I+ +TS A+L +V
Sbjct: 16 VKRGDIFYADLSPVVGSEQGGIRPVLIIQNNVGNKYS-PTVIIAAITSQINKAKLPTHVE 74
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I E L K+SV L+ QI +DK RL+EK+G +S + ++++ +
Sbjct: 75 ISSEEYGLNKDSVVLLEQIRTLDKKRLKEKIGHMSDKDMRKVDEAL 120
>gi|49484294|ref|YP_041518.1| hypothetical protein SAR2156 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49242423|emb|CAG41137.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 120
Score = 59.7 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDVY+ D GSE G RPV+IIQ+D N S T IV +T A++ +V I
Sbjct: 4 RGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYS-PTVIVAAITGRINKAKIPTHVEIE 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
K + +L K+SV L+ QI +DK RL+EK+ +S + +++ +
Sbjct: 63 KKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNAL 106
>gi|154504833|ref|ZP_02041571.1| hypothetical protein RUMGNA_02343 [Ruminococcus gnavus ATCC 29149]
gi|153794716|gb|EDN77136.1| hypothetical protein RUMGNA_02343 [Ruminococcus gnavus ATCC 29149]
Length = 118
Score = 59.7 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAE-LKGNVFI 61
RGD+Y +DFG GS+ G RP +++ ++K N +S VVPL++ + L +V I
Sbjct: 4 RGDIYYVDFGEKDGSKQGGVRPALVVSNNKANKHS-PVVTVVPLSARVWKKKYLPTHVQI 62
Query: 62 PKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQ 101
PK S L K S+AL Q+ +DK+RL E++GKV ++++
Sbjct: 63 PKG-SGLNKPSMALAEQVETLDKTRLGERIGKVLDDMVME 101
>gi|153956176|ref|YP_001396941.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
555]
gi|146349034|gb|EDK35570.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
555]
Length = 116
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPVIIIQ+D N S T IV +TS A+L +V I
Sbjct: 7 RGDIFYADLSPVVGSEQGGVRPVIIIQNDVGNKYS-PTVIVAAITSQINKAKLPTHVEIS 65
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVS 95
L K+SV L+ QI +DK RL+EK+G ++
Sbjct: 66 SEAYGLNKDSVVLLEQIRTLDKRRLKEKIGHMT 98
>gi|69250347|ref|ZP_00605137.1| PemK-like protein [Enterococcus faecium DO]
gi|68193970|gb|EAN08534.1| PemK-like protein [Enterococcus faecium DO]
Length = 120
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV++IQ++ N S T IV +T+ +L ++
Sbjct: 2 VKRGDIYFADLSPVVGSEQGGTRPVLVIQNNLGNHFS-PTIIVAAITAKMAKPKLPTHIG 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I + + ++SV L+ QI +DKSRL+EKV + + I+ ++++ +
Sbjct: 61 IKATGTGIERDSVILLEQIRTIDKSRLKEKVCHLDRPIMAEVDRAL 106
>gi|154502762|ref|ZP_02039822.1| hypothetical protein RUMGNA_00576 [Ruminococcus gnavus ATCC 29149]
gi|153796645|gb|EDN79065.1| hypothetical protein RUMGNA_00576 [Ruminococcus gnavus ATCC 29149]
Length = 115
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD+Y D GSE G RPV++IQ+D N +S T I +TS A+L ++ I
Sbjct: 5 RGDIYYADLSPVIGSEQGGVRPVLVIQNDVGNKHS-PTVICAAITSRMNKAKLPTHIEIS 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLK 111
+ +L KNSV L+ QI +DK RL+E + V + ++ + I L+
Sbjct: 64 AKKYRLVKNSVVLLEQIRTLDKKRLKEYICHVDGTFMEEVNEAIRISLE 112
>gi|116491611|ref|YP_811155.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Oenococcus oeni PSU-1]
gi|116092336|gb|ABJ57490.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Oenococcus oeni PSU-1]
Length = 118
Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD+Y D GSE G RPV+I+Q+D N+NS T I+ +TS +L +V++P
Sbjct: 9 RGDIYYADLSPIIGSEQGGVRPVLILQNDTGNINS-PTVIIAAMTSKLGKTKLPTHVWLP 67
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKV 91
+ ++L K S+ ++ QI +DK RL + V
Sbjct: 68 ASATKLKKPSIIMLEQIRTIDKRRLHDFV 96
>gi|118586393|ref|ZP_01543842.1| growth inhibitor [Oenococcus oeni ATCC BAA-1163]
gi|118433180|gb|EAV39897.1| growth inhibitor [Oenococcus oeni ATCC BAA-1163]
Length = 121
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD+Y D GSE G RPV+I+Q+D N+NS T I+ +TS +L +V++P
Sbjct: 12 RGDIYYADLSPIIGSEQGGVRPVLILQNDTGNINS-PTVIIAAMTSKLGKTKLPTHVWLP 70
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKV 91
+ ++L K S+ ++ QI +DK RL + V
Sbjct: 71 ASATKLKKPSIIMLEQIRTIDKRRLHDFV 99
>gi|154483678|ref|ZP_02026126.1| hypothetical protein EUBVEN_01382 [Eubacterium ventriosum ATCC
27560]
gi|149735588|gb|EDM51474.1| hypothetical protein EUBVEN_01382 [Eubacterium ventriosum ATCC
27560]
Length = 115
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV++IQ+D N +S T IV +TS A+L +V
Sbjct: 3 IRRGDIYYADLRPVVGSEQGGIRPVLVIQNDTGNRHS-PTVIVAAITSKMTKAKLPTHVK 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++ + K+S+ L+ Q+ +DK RL++KV + +L +++ +
Sbjct: 62 IDCDKCNIIKDSIILLEQLRTIDKKRLKDKVCHLDSEMLKIVDKAL 107
>gi|150019680|ref|YP_001311934.1| transcriptional modulator of MazE/toxin, MazF [Clostridium
beijerinckii NCIMB 8052]
gi|149906145|gb|ABR36978.1| transcriptional modulator of MazE/toxin, MazF [Clostridium
beijerinckii NCIMB 8052]
Length = 117
Score = 58.2 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RG+++ D GSE G RPVIIIQ+D N S T IV +TS A+L +V I
Sbjct: 8 RGEIFYADLSPVIGSEQGGIRPVIIIQNDIGNRYS-PTVIVAAITSQINKAKLPIHVEIS 66
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
E L ++SV L+ QI +DK RL+EK+G +++ + ++++ +
Sbjct: 67 SEEYGLNRDSVVLLEQIRTLDKRRLKEKIGHMTEADMKKVDKAL 110
>gi|124520613|ref|ZP_01695741.1| transcriptional modulator of MazE/toxin, MazF [Bacillus coagulans
36D1]
gi|124497474|gb|EAY45033.1| transcriptional modulator of MazE/toxin, MazF [Bacillus coagulans
36D1]
Length = 116
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV+I+Q+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLILQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I L ++SV L+ QI +DK RL +K+ + + ++ +I+ + L
Sbjct: 62 IDAKRYGLERDSVILLEQIRTIDKQRLTDKITHLDEEVMEKIDDALQISL 111
>gi|148655568|ref|YP_001275773.1| transcriptional modulator of MazE/toxin, MazF [Roseiflexus sp.
RS-1]
gi|148567678|gb|ABQ89823.1| transcriptional modulator of MazE/toxin, MazF [Roseiflexus sp.
RS-1]
Length = 88
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIV-VPLTSNTVNAELKGNV 59
+ RG+V++ D GSE RPV+I Q+D +N+ T +V +P T+N A L V
Sbjct: 3 IKRGEVWLADLNPIRGSEQASIRPVLIFQNDA--INTFTTTVVTIPFTTNLRRAALPSCV 60
Query: 60 FIPKNESQLPKNSVALVHQIIVVDKSRL 87
+ + L +SVAL HQ+ V+D +RL
Sbjct: 61 RVAAGDGGLSDDSVALCHQLRVLDATRL 88
>gi|30018503|ref|NP_830134.1| PEMK-like protein [Bacillus cereus ATCC 14579]
gi|30260430|ref|NP_842807.1| transcriptional regulator, PemK family [Bacillus anthracis str.
Ames]
gi|42779355|ref|NP_976602.1| transcriptional regulator, PemK family [Bacillus cereus ATCC 10987]
gi|47777792|ref|YP_016860.2| transcriptional regulator, pemk family [Bacillus anthracis str.
'Ames Ancestor']
gi|49183273|ref|YP_026525.1| transcriptional regulator, PemK family [Bacillus anthracis str.
Sterne]
gi|49479124|ref|YP_034581.1| pemK-like protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52144984|ref|YP_081843.1| pemK-like protein [Bacillus cereus E33L]
gi|65317682|ref|ZP_00390641.1| COG2337: Growth inhibitor [Bacillus anthracis str. A2012]
gi|118476002|ref|YP_893153.1| pemK-like protein [Bacillus thuringiensis str. Al Hakam]
gi|152974084|ref|YP_001373601.1| transcriptional modulator of MazE/toxin, MazF [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|29894043|gb|AAP07335.1| PEMK-like protein [Bacillus cereus ATCC 14579]
gi|30253751|gb|AAP24293.1| transcriptional regulator, PemK family [Bacillus anthracis str.
Ames]
gi|42735270|gb|AAS39210.1| transcriptional regulator, PemK family [Bacillus cereus ATCC 10987]
gi|47551497|gb|AAT29335.2| transcriptional regulator, PemK family [Bacillus anthracis str.
'Ames Ancestor']
gi|49177200|gb|AAT52576.1| transcriptional regulator, PemK family [Bacillus anthracis str.
Sterne]
gi|49330680|gb|AAT61326.1| pemK-like protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51978453|gb|AAU20003.1| pemK-like protein [Bacillus cereus E33L]
gi|118415227|gb|ABK83646.1| pemK-like protein [Bacillus thuringiensis str. Al Hakam]
gi|152022836|gb|ABS20606.1| transcriptional modulator of MazE/toxin, MazF [Bacillus cereus
subsp. cytotoxis NVH 391-98]
Length = 116
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I + ++SV L+ QI +DK RL +K+ + + +++++++ + L
Sbjct: 62 IDAKKYGFERDSVILLEQIRTIDKQRLTDKITHLDEVMMIRVDEALQISL 111
>gi|153956427|ref|YP_001397192.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
gi|146349285|gb|EDK35821.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 126
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
+GD++ D G E G RPV+IIQ+D N S T IV +TS T + L ++ +
Sbjct: 5 KGDMFYADLTPVVGCEQGGIRPVLIIQNDIGNRYS-PTVIVAAITSRTEKSHLPTHIRLC 63
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ L +NS+ L+ Q+ +D+SRL E +G +S + QI + +
Sbjct: 64 SQQYGLRQNSLVLLEQVRTIDRSRLREYIGHLSDLQMQQINEAL 107
>gi|28373997|pdb|1NE8|A Chain A, Ydce Protein From Bacillus Subtilis
Length = 117
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 4 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTAIVAAITAQIQKAKLPTHVE 62
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I ++SV L+ QI +DK RL +K+ + ++ ++++ + L
Sbjct: 63 IDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISL 112
>gi|16077533|ref|NP_388347.1| hypothetical protein BSU04660 [Bacillus subtilis subsp. subtilis
str. 168]
gi|154684969|ref|YP_001420130.1| YdcE [Bacillus amyloliquefaciens FZB42]
gi|71648668|sp|P96622|ENDOA_BACSU Endoribonuclease EndoA
gi|1881276|dbj|BAA19303.1| FUNCTION UNKNOWN, SIMILAR PRODUCT IN MYCOBACTERIUM TUBERCULOSIS AND
STAPHYLOCOCCUS AUREUS. [Bacillus subtilis]
gi|2632766|emb|CAB12273.1| ydcE [Bacillus subtilis subsp. subtilis str. 168]
gi|154350820|gb|ABS72899.1| YdcE [Bacillus amyloliquefaciens FZB42]
Length = 116
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTAIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I ++SV L+ QI +DK RL +K+ + ++ ++++ + L
Sbjct: 62 IDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISL 111
>gi|153816434|ref|ZP_01969102.1| hypothetical protein RUMTOR_02687 [Ruminococcus torques ATCC 27756]
gi|145846222|gb|EDK23140.1| hypothetical protein RUMTOR_02687 [Ruminococcus torques ATCC 27756]
Length = 114
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPV++IQ++ N +S T I +TS A+L ++ I
Sbjct: 4 RGDIFYADLSPVVGSEQGGVRPVLVIQNNVGNRHS-PTVICAAITSKMNKAKLPTHIEIS 62
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLK 111
+ ++ KNSV L+ QI +DK RL+E V + ++ ++++ I L+
Sbjct: 63 TRDYKIVKNSVILLEQIRTIDKQRLKEYVCHIDSAMMQKVDKAIRISLE 111
>gi|116493285|ref|YP_805020.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Pediococcus pentosaceus ATCC 25745]
gi|116103435|gb|ABJ68578.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Pediococcus pentosaceus ATCC 25745]
Length = 120
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGD++ D GSE G RPV++IQ++ N S T I+ +T+ ++ +V I
Sbjct: 8 RGDLFYADLSPVVGSEQGGMRPVLVIQNNIGNHYS-PTVIIAAITAKISKPKMPTHVGIK 66
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
E + +NSV L+ QI +DK RL +K+G++ + Q+++ +
Sbjct: 67 GGEQGVGRNSVILMEQIRTIDKQRLHDKIGRLDDQKMKQVDEAL 110
>gi|153812756|ref|ZP_01965424.1| hypothetical protein RUMOBE_03163 [Ruminococcus obeum ATCC 29174]
gi|149831116|gb|EDM86205.1| hypothetical protein RUMOBE_03163 [Ruminococcus obeum ATCC 29174]
Length = 130
Score = 56.6 bits (135), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+IIQ+D N +S T I +TS A+L ++
Sbjct: 18 IKRGDIFYADLRPVVGSEQGGVRPVLIIQNDVGNRHS-PTVICAAITSKMNKAKLPTHIE 76
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVLK 111
I + + K+SV L+ Q+ +DK RL++KV + + +L ++ ++ L+
Sbjct: 77 IDASSYGIEKDSVILLEQLRTIDKKRLKDKVCHLDQTMLDRVNHALEISLE 127
>gi|89099498|ref|ZP_01172374.1| hypothetical protein B14911_20010 [Bacillus sp. NRRL B-14911]
gi|89085884|gb|EAR65009.1| hypothetical protein B14911_20010 [Bacillus sp. NRRL B-14911]
Length = 116
Score = 56.6 bits (135), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I ++SV L+ QI +DK RL +K+ + ++ ++++ + L
Sbjct: 62 IDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMEKVDEALQISL 111
>gi|56418768|ref|YP_146086.1| hypothetical protein GK0233 [Geobacillus kaustophilus HTA426]
gi|138893883|ref|YP_001124336.1| Transcriptional regulator PemK family [Geobacillus
thermodenitrificans NG80-2]
gi|56378610|dbj|BAD74518.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|134265396|gb|ABO65591.1| Transcriptional regulator PemK family [Geobacillus
thermodenitrificans NG80-2]
Length = 116
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I ++SV L+ QI +DK RL +K+ + ++ ++++ + L
Sbjct: 62 IDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISL 111
>gi|51894070|ref|YP_076761.1| growth inhibitor [Symbiobacterium thermophilum IAM 14863]
gi|51857759|dbj|BAD41917.1| growth inhibitor [Symbiobacterium thermophilum IAM 14863]
Length = 120
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV+ D GSE G RPV+I+Q+D N S T IV +TS A+L +V
Sbjct: 7 IRRGDVFYADLSPVIGSEQGGVRPVLILQNDVGNKYS-PTVIVSAITSQIEKAKLPIHVE 65
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ L ++SV L+ Q+ +DK RL E+V + I+ Q+++ +
Sbjct: 66 LDGETYGLERDSVILLEQVRTIDKRRLRERVTHLGSDIMRQVDEAL 111
>gi|75760685|ref|ZP_00740711.1| MazF protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|89205770|ref|ZP_01184337.1| PemK-like protein [Bacillus weihenstephanensis KBAB4]
gi|74491835|gb|EAO55025.1| MazF protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|89156360|gb|EAR76361.1| PemK-like protein [Bacillus weihenstephanensis KBAB4]
Length = 116
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I + ++SV L+ QI +DK RL +K+ + + ++ ++++ + L
Sbjct: 62 IDAKKYGFERDSVILLEQIRTIDKQRLTDKITHLDEVMMSRVDEALQISL 111
>gi|28377410|ref|NP_784302.1| hypothetical protein lp_0524 [Lactobacillus plantarum WCFS1]
gi|28270242|emb|CAD63143.1| unknown [Lactobacillus plantarum WCFS1]
Length = 130
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+I+Q++ N S T IV +T+ A++ +V
Sbjct: 6 IKRGDIFYADLSPVVGSEQGGMRPVLIVQNNVGNHYS-PTVIVAAITAKVQKAKMPTHVN 64
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I + + KNSV L+ QI +DK RL+++V + + +++ +
Sbjct: 65 INAAHTGIEKNSVVLLEQIRTIDKQRLKDRVTHLDDQTMRRVDNAL 110
>gi|148381336|ref|YP_001255877.1| regulator of cell growth [Clostridium botulinum A str. ATCC 3502]
gi|153931114|ref|YP_001385713.1| PemK family protein [Clostridium botulinum A str. ATCC 19397]
gi|153936570|ref|YP_001389119.1| PemK family protein [Clostridium botulinum A str. Hall]
gi|153941127|ref|YP_001392752.1| PemK family protein [Clostridium botulinum F str. Langeland]
gi|148290820|emb|CAL84955.1| putative regulator of cell growth [Clostridium botulinum A str.
ATCC 3502]
gi|152927158|gb|ABS32658.1| PemK family protein [Clostridium botulinum A str. ATCC 19397]
gi|152932484|gb|ABS37983.1| PemK family protein [Clostridium botulinum A str. Hall]
gi|152937023|gb|ABS42521.1| PemK family protein [Clostridium botulinum F str. Langeland]
Length = 117
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPVI+IQ++ N S T I+ +TS A+L +V
Sbjct: 6 VKRGDIFYADLSPVVGSEQGGIRPVIVIQNNIGNKYS-PTVIIAAITSQINKAKLPTHVE 64
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I + L K+SV L+ QI +DK RL+EK+G + + +++ I
Sbjct: 65 ISSEDYGLNKDSVVLLEQIRTLDKRRLKEKIGHMIDEDMKKVDTAI 110
>gi|126651484|ref|ZP_01723688.1| hypothetical protein BB14905_07369 [Bacillus sp. B14905]
gi|126591737|gb|EAZ85833.1| hypothetical protein BB14905_07369 [Bacillus sp. B14905]
Length = 116
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV+ D GSE G RPV+IIQ+D N S T I+ +T+ A+L +V
Sbjct: 3 VKRGDVFFADLSPVVGSEQGGTRPVLIIQNDIGNRFS-PTVIIAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIE 103
I + ++SV L+ Q+ +DKSRL +++ ++ ++ +++
Sbjct: 62 INAEKYGFERDSVILLEQVRTIDKSRLTDRITQLDHAVMEKVD 104
>gi|94992601|ref|YP_600700.1| MazF protein [Streptococcus pyogenes MGAS2096]
gi|94546109|gb|ABF36156.1| MazF protein [Streptococcus pyogenes MGAS2096]
Length = 125
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNT-VNAELKGNV 59
+ RGD++ GSE G RPV+ I ++ N +S T IV P+TS T A+L +
Sbjct: 5 IKRGDIFYATLNPVIGSEQGGTRPVLTISNNTGNRHS-PTIIVAPITSRTHTKAKLPTHT 63
Query: 60 FIPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ K+ +L K+S+ L+ QI +DK RL++ +G + HI+ ++++ +
Sbjct: 64 EV-KDFDKLDKDSIILLEQIRTIDKQRLKQYIGLMPDHIMARVDKAL 109
>gi|81429223|ref|YP_396224.1| Putative DNA-binding protein, PemK family [Lactobacillus sakei
subsp. sakei 23K]
gi|78610866|emb|CAI55918.1| Putative DNA-binding protein, PemK family [Lactobacillus sakei
subsp. sakei 23K]
Length = 118
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y D GSE G RPV+IIQ+D N +S T IV +T+ +L +V
Sbjct: 2 IQRGDIYYADLSPVVGSEQGGMRPVLIIQNDVGNHHS-PTVIVAAITAKIQKPKLPTHVG 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I + + ++SV L+ Q+ +DK RL++KV + + Q+++ +
Sbjct: 61 ITAKANGVERDSVILLEQVRTIDKQRLKDKVTHLVAEKMRQVDRAL 106
>gi|149183255|ref|ZP_01861699.1| hypothetical protein BSG1_20074 [Bacillus sp. SG-1]
gi|148849051|gb|EDL63257.1| hypothetical protein BSG1_20074 [Bacillus sp. SG-1]
Length = 116
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++SV L+ QI +DK RL +K+ + ++ +++ +
Sbjct: 62 IDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMEKVDDAL 107
>gi|108758430|ref|YP_629911.1| PemK family protein [Myxococcus xanthus DK 1622]
gi|108462310|gb|ABF87495.1| PemK family protein [Myxococcus xanthus DK 1622]
Length = 122
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 56/102 (54%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV+ ++ G P P +++Q D N + + T +V LTSN A GNV
Sbjct: 6 INRGDVFWVEPDDSRGPVPSYSHPHVVVQDDVFNHSRITTVVVCALTSNLHRASEPGNVL 65
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQI 102
+ E LPK SV +V Q+ VDK+RL E++G +S + QI
Sbjct: 66 LEVGEGNLPKQSVVVVSQVSSVDKARLGERIGALSDARVEQI 107
>gi|126647862|ref|ZP_01720367.1| hypothetical protein ALPR1_07820 [Algoriphagus sp. PR1]
gi|126576538|gb|EAZ80816.1| hypothetical protein ALPR1_07820 [Algoriphagus sp. PR1]
Length = 113
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 61/106 (57%)
Query: 5 DVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIPKN 64
D+++++ G+EPG RP +IIQ++ N + ++ P+TS E V + +
Sbjct: 6 DIWLVNLNPARGTEPGKIRPSVIIQTNLLNQVGHPSTLICPITSQISEDENILRVKVDQK 65
Query: 65 ESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
E+ L ++S LV QI +D R EK+GK+SK L++++++ ++
Sbjct: 66 ETGLDQDSEILVDQIRALDNRRFLEKLGKISKEKALELQEKLKALM 111
>gi|16799960|ref|NP_470228.1| hypothetical protein lin0887 [Listeria innocua Clip11262]
gi|16413337|emb|CAC96119.1| lin0887 [Listeria innocua]
Length = 115
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV+IIQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFS-PTVIVAAITAKIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ + ++SV L+ QI +DK RL +K+ + + ++ ++ Q ++ L
Sbjct: 62 ATRKDG-FERDSVILLEQIRTIDKQRLTDKITHLDEELMAKVNQALEVSL 110
>gi|153869928|ref|ZP_01999434.1| PemK-like protein [Beggiatoa sp. PS]
gi|152073602|gb|EDN70562.1| PemK-like protein [Beggiatoa sp. PS]
Length = 114
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+TRGDV + D G+E RPV+++Q D+ N S +T ++ P T+ A L +V
Sbjct: 4 ITRGDVILCDLNPVMGTEQAGIRPVLVLQIDRANAVSPHT-VIAPFTTKIRQALLPSHVM 62
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I + L +SV L QI V+DK+R+ + +G V + ++ + + +L
Sbjct: 63 IARGIGGLSNDSVLLCEQIRVIDKNRIIKILGHVDDKKMEEVAKALCIIL 112
>gi|52079001|ref|YP_077792.1| putative plasmid maintenance toxin protein [Bacillus licheniformis
ATCC 14580]
gi|52784373|ref|YP_090202.1| YdcE [Bacillus licheniformis ATCC 14580]
gi|52002212|gb|AAU22154.1| putative RNase [Bacillus licheniformis ATCC 14580]
gi|52346875|gb|AAU39509.1| YdcE [Bacillus licheniformis DSM 13]
Length = 116
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ++ N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNNIGNRFS-PTAIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
I ++SV L+ QI +DK RL +K+ + ++ ++ + + L
Sbjct: 62 IDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMEKVNEALQISL 111
>gi|15613085|ref|NP_241388.1| hypothetical protein BH0522 [Bacillus halodurans C-125]
gi|10173135|dbj|BAB04241.1| BH0522 [Bacillus halodurans C-125]
Length = 116
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV++IQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++SV L+ QI +DK RL +K+ + ++ ++ +
Sbjct: 62 INAKRYGFDRDSVILLEQIRTIDKQRLTDKITHLDDDMMSKVNDAL 107
>gi|56962583|ref|YP_174309.1| growth inhibitor [Bacillus clausii KSM-K16]
gi|56908821|dbj|BAD63348.1| growth inhibitor [Bacillus clausii KSM-K16]
Length = 116
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV+IIQ++ N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYFADLSPVVGSEQGGVRPVLIIQNNIGNRFS-PTVIVAAITAQIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I ++ ++SV L+ Q+ +DK RL +K+ + ++ +++ +
Sbjct: 62 INASKYGFDRDSVILLEQVRTIDKQRLTDKITHLDDKMMRSVDKAL 107
>gi|111225278|ref|YP_716072.1| hypothetical protein FRAAL5929 [Frankia alni ACN14a]
gi|111152810|emb|CAJ64554.1| Hypothetical protein [Frankia alni ACN14a]
Length = 103
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 8 MLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIPKNESQ 67
M+DFG P G E G+RRP +++ +D+ N + IVVP+T L +V + +
Sbjct: 1 MVDFGEPIGHEQGLRRPAVVVSADRLNRSRAGLSIVVPVTR--TRRGLPSHVELAPGGTG 58
Query: 68 LPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
L + S A V + V + R ++G V LL++ + + ++L
Sbjct: 59 LHQTSFAKVEDVKSVSQQRFARRLGVVGPDHLLRMTEALKFLL 101
>gi|77380204|gb|ABA71736.1| pemK-like protein [Enterococcus faecalis]
Length = 123
Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNT-VNAELKGNV 59
+ RGD+Y + GSE G RPV+II +D N +S T IV P+TS A+L +
Sbjct: 5 IKRGDIYYANLNPVIGSEQGGTRPVLIISNDVGNKHS-PTVIVAPITSRIHTKAKLPTHT 63
Query: 60 FIPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I E L KNS+ L+ Q+ +DK RL++ +G + +I+ ++++ +
Sbjct: 64 LINDFEG-LDKNSIILLEQVRTIDKQRLKQYLGMIPDNIVARVDKAL 109
>gi|78058369|gb|ABB17548.1| ORFG2-27 [Enterococcus faecalis]
Length = 122
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD+Y + GSE G RPV+II +D N +S T IV +TS
Sbjct: 5 IKRGDIYYANLNPVIGSEQGGIRPVLIISNDIGNKHS-PTVIVAAITSRVQTKAKLPTHT 63
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
I + + L K+SV L+ QI +DK RL+E +G + + LL +++ +
Sbjct: 64 IVNDFAGLDKDSVILLEQIRTIDKQRLQEYLGTLDRRFLLAVDKAL 109
>gi|16802929|ref|NP_464414.1| hypothetical protein lmo0888 [Listeria monocytogenes EGD-e]
gi|16410291|emb|CAC98966.1| lmo0888 [Listeria monocytogenes]
Length = 115
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV+IIQ+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFS-PTVIVAAITAKIQKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ + K+SV L+ QI +DK RL +K+ + + ++ ++ + ++ L
Sbjct: 62 ATRKDG-FEKDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSL 110
>gi|29375414|ref|NP_814568.1| transcriptional regulator, PemK family [Enterococcus faecalis V583]
gi|29342874|gb|AAO80638.1| transcriptional regulator, PemK family [Enterococcus faecalis V583]
Length = 113
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RG+V+ + GSE G RPV+IIQ++K NL S T IV P+T N V
Sbjct: 2 IKRGEVFYANLSPVVGSEQGGIRPVLIIQNNKGNLFS-PTLIVAPITRNVSKRLQPTQVL 60
Query: 61 --IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
IP NE + P S+ L+ QI +DK R+ KV ++S+ + Q+ Q +
Sbjct: 61 IEIPHNECRTP--SLILLEQIRTLDKERMLHKVCQLSREEMEQVNQAL 106
>gi|116872290|ref|YP_849071.1| PemK family transcriptional regulator [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116741168|emb|CAK20288.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 114
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV+IIQ+D N S T IV +T+ A+L +V
Sbjct: 2 VKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFS-PTVIVAAITAKIQKAKLPTHVE 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ + ++SV L+ QI +DK RL +K+ + + ++ ++ + ++ L
Sbjct: 61 ATRKDG-FERDSVILLEQIRTIDKQRLTDKITHLDEELMAKVNKALEVSL 109
>gi|134097900|ref|YP_001103561.1| hypothetical protein SACE_1313 [Saccharopolyspora erythraea NRRL
2338]
gi|133910523|emb|CAM00636.1| hypothetical protein [Saccharopolyspora erythraea NRRL 2338]
Length = 115
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTK----IVVPLTSNTVNAELK 56
M RGDVY +DF GSE RP +++ +D N ++ + VVPLTSN VN L
Sbjct: 1 MRRGDVYWVDFEPIRGSEADKTRPAVVVSNDAANRSAERARRGVITVVPLTSN-VNRVLP 59
Query: 57 GNVFIPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
V + + L +S A Q+ V RL +++G+V L +++ +
Sbjct: 60 FQVRLRAADCGLAGDSKAQAEQVRAVAFHRLGKRIGRVPDTTLAKLDNAL 109
>gi|47092096|ref|ZP_00229889.1| transcriptional regulator, PemK family [Listeria monocytogenes str.
4b H7858]
gi|47094895|ref|ZP_00232509.1| transcriptional regulator, PemK family [Listeria monocytogenes str.
1/2a F6854]
gi|153166206|ref|ZP_01926825.1| hypothetical protein LMHG_00071 [Listeria monocytogenes FSL N1-017]
gi|153173820|ref|ZP_01929515.1| hypothetical protein LMIG_01944 [Listeria monocytogenes FSL N3-165]
gi|153185409|ref|ZP_01935996.1| hypothetical protein LMOG_01932 [Listeria monocytogenes J0161]
gi|153190281|ref|ZP_01937703.1| hypothetical protein LMPG_01883 [Listeria monocytogenes J2818]
gi|153197808|ref|ZP_01942020.1| hypothetical protein LMRG_02312 [Listeria monocytogenes 10403S]
gi|153201589|ref|ZP_01943398.1| hypothetical protein LMSG_00417 [Listeria monocytogenes HPB2262]
gi|47016777|gb|EAL07696.1| transcriptional regulator, PemK family [Listeria monocytogenes str.
1/2a F6854]
gi|47019536|gb|EAL10276.1| transcriptional regulator, PemK family [Listeria monocytogenes str.
4b H7858]
gi|126941975|gb|EBA19847.1| hypothetical protein LMOG_01932 [Listeria monocytogenes J0161]
gi|127632767|gb|EBA22209.1| hypothetical protein LMRG_02312 [Listeria monocytogenes 10403S]
gi|127766213|gb|EBA26555.1| hypothetical protein LMPG_01883 [Listeria monocytogenes J2818]
gi|133727722|gb|EBA29420.1| hypothetical protein LMHG_00071 [Listeria monocytogenes FSL N1-017]
gi|133730654|gb|EBA32352.1| hypothetical protein LMIG_01944 [Listeria monocytogenes FSL N3-165]
gi|133735897|gb|EBA37595.1| hypothetical protein LMSG_00417 [Listeria monocytogenes HPB2262]
Length = 114
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDVY D GSE G RPV+IIQ+D N S T IV +T+ A+L +V
Sbjct: 2 VKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFS-PTVIVAAITAKIQKAKLPTHVE 60
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEIDYVL 110
+ + ++SV L+ QI +DK RL +K+ + + ++ ++ + ++ L
Sbjct: 61 ATRKDG-FERDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSL 109
>gi|116495989|ref|YP_807723.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Lactobacillus casei ATCC 334]
gi|116106139|gb|ABJ71281.1| Toxin-antitoxin addiction module toxin component MazF (an
endoRNAse) [Lactobacillus casei ATCC 334]
Length = 127
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 3 RGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVFIP 62
RGDV+ D GSE G RPV+IIQ++ N S T IV +TS ++ +V +
Sbjct: 7 RGDVFFADLSPVVGSEQGGNRPVLIIQNNVGNHYS-PTVIVAAITSKIQKPKMPTHVGLR 65
Query: 63 KNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ + +NSV L+ QI +DK RL+ +V +S + +++ +
Sbjct: 66 AKQDGVERNSVILLEQIRTIDKQRLQARVTALSSTKMAAVDRAL 109
>gi|94266675|ref|ZP_01290351.1| chpK [delta proteobacterium MLMS-1]
gi|93452692|gb|EAT03246.1| chpK [delta proteobacterium MLMS-1]
Length = 93
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 34 NLNSLNTKIVVPLTSNTVNAELKGNVFIPKNESQLPKNSVALVHQIIVVDKSRLEEKVGK 93
N +++ T +V LTSN A GNV + + E+ LPK+SV + Q+ VDK L EK+GK
Sbjct: 3 NASNIKTVVVCALTSNLKRANAPGNVLLKQGEASLPKSSVVNISQVYTVDKGDLVEKIGK 62
Query: 94 VSKHILLQI 102
V+ L QI
Sbjct: 63 VTAKRLEQI 71
>gi|68056476|ref|ZP_00540594.1| PemK-like protein [Exiguobacterium sibiricum 255-15]
gi|68006927|gb|EAM86220.1| PemK-like protein [Exiguobacterium sibiricum 255-15]
Length = 116
Score = 52.4 bits (124), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGDV+ + GSE G RPV+++Q+D N S T IV +T+ A+L +V
Sbjct: 3 VKRGDVFYANLSPVVGSEQGGVRPVLVLQNDIGNRFS-PTVIVAAITAQIDKAKLPTHVE 61
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ + L ++SV L+ Q+ +DK RL +KV + ++++ +
Sbjct: 62 VYRERHGLERDSVILLEQVRTIDKRRLTDKVTHLDPDTMMKVNSAV 107
>gi|94266580|ref|ZP_01290264.1| chpK [delta proteobacterium MLMS-1]
gi|93452798|gb|EAT03330.1| chpK [delta proteobacterium MLMS-1]
Length = 94
Score = 52.4 bits (124), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 34 NLNSLNTKIVVPLTSNTVNAELKGNVFIPKNESQLPKNSVALVHQIIVVDKSRLEEKVGK 93
N +++ T +V LTSN A GNV + + E+ LPK+SV + Q+ VDK L EK+GK
Sbjct: 3 NASNIKTVVVCALTSNLKRANAPGNVLLKQGEASLPKSSVVNISQVYTVDKGDLVEKIGK 62
Query: 94 VSKHILLQI 102
V+ L QI
Sbjct: 63 VTAKRLDQI 71
>gi|90961340|ref|YP_535256.1| Transcriptional regulator, PemK family [Lactobacillus salivarius
subsp. salivarius UCC118]
gi|90820534|gb|ABD99173.1| Transcriptional regulator, PemK family [Lactobacillus salivarius
subsp. salivarius UCC118]
Length = 122
Score = 52.4 bits (124), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 1 MTRGDVYMLDFGIPAGSEPGMRRPVIIIQSDKKNLNSLNTKIVVPLTSNTVNAELKGNVF 60
+ RGD++ D GSE G RPV+IIQ++ N S T I+ +TS ++ ++
Sbjct: 6 VKRGDIFFADLSPVVGSEQGGVRPVLIIQNNIGNKFS-PTVIIAAITSKISKPKMPTHIG 64
Query: 61 IPKNESQLPKNSVALVHQIIVVDKSRLEEKVGKVSKHILLQIEQEI 106
+ E L K+SV L+ Q+ +DK RL++KV + + ++ ++ +
Sbjct: 65 LVAKEVGLEKDSVVLLEQLRTIDKQRLKDKVTHIDEKLMQRVNNAL 110
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.315 0.135 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,556,640
Number of Sequences: 5470121
Number of extensions: 13387107
Number of successful extensions: 27500
Number of sequences better than 1.0e-05: 115
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 27404
Number of HSP's gapped (non-prelim): 115
length of query: 112
length of database: 1,894,087,724
effective HSP length: 80
effective length of query: 32
effective length of database: 1,456,478,044
effective search space: 46607297408
effective search space used: 46607297408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)