BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE1408
(236 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42526916|ref|NP_972014.1| flagellar filament outer layer... 487 e-136
gi|1813505|gb|AAB47846.1| outer membrane protein [Treponema... 266 7e-70
gi|15639650|ref|NP_219100.1| outer membrane protein, putati... 266 1e-69
gi|2108244|gb|AAB63367.1| FlaA homolog-1 [Treponema pallidum] 261 2e-68
gi|116328973|ref|YP_798693.1| Endoflagellar filament sheath... 94 5e-18
gi|24216078|ref|NP_713559.1| flagellar filament outer layer... 93 1e-17
gi|45656681|ref|YP_000767.1| flagellar filament sheath prot... 93 1e-17
gi|15639651|ref|NP_219101.1| flagellar filament outer layer... 82 3e-14
gi|2108245|gb|AAB63368.1| FlaA homolog-2 [Treponema pallidum] 80 1e-13
gi|42526917|ref|NP_972015.1| flagellar filament outer layer... 74 6e-12
gi|116328974|ref|YP_798694.1| Endoflagellar filament sheath... 71 7e-11
gi|116330418|ref|YP_800136.1| Endoflagellar filament sheath... 70 8e-11
gi|24216079|ref|NP_713560.1| flagellar filament outer layer... 70 9e-11
gi|156742982|ref|YP_001433111.1| hypothetical protein Rcas_... 55 5e-06
>gi|42526916|ref|NP_972014.1| flagellar filament outer layer protein FlaA, putative [Treponema
denticola ATCC 35405]
gi|41817231|gb|AAS11925.1| flagellar filament outer layer protein FlaA, putative [Treponema
denticola ATCC 35405]
Length = 236
Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats.
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MKHGGLVFAGIALMLLFAFAPLTAQQGSINYQTYMVDTFDNPDGQDWAYQAVGSKFITEG 60
MKHGGLVFAGIALMLLFAFAPLTAQQGSINYQTYMVDTFDNPDGQDWAYQAVGSKFITEG
Sbjct: 1 MKHGGLVFAGIALMLLFAFAPLTAQQGSINYQTYMVDTFDNPDGQDWAYQAVGSKFITEG 60
Query: 61 YPKVQYLNGMPHAVKVMHDDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNI 120
YPKVQYLNGMPHAVKVMHDDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNI
Sbjct: 61 YPKVQYLNGMPHAVKVMHDDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNI 120
Query: 121 HRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASRYIGN 180
HRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASRYIGN
Sbjct: 121 HRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASRYIGN 180
Query: 181 KNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDGYELADQSFDGEKTE 236
KNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDGYELADQSFDGEKTE
Sbjct: 181 KNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDGYELADQSFDGEKTE 236
>gi|1813505|gb|AAB47846.1| outer membrane protein [Treponema pallidum]
Length = 242
Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats.
Identities = 121/237 (51%), Positives = 169/237 (71%), Gaps = 4/237 (1%)
Query: 1 MKHGGLVFAGIALMLLFAFAPLTAQQGSINYQTYMVDTFDNP-DGQDWAYQAVGSKFITE 59
MK G + AG AL F +PL AQ+ +NYQ Y +D FD + Q A++A GSKFIT+
Sbjct: 1 MKQGCFMVAGFALTCAFLVSPLAAQRSKVNYQAYFIDDFDGASEDQGLAWRAAGSKFITK 60
Query: 60 GYPKVQYLNGMPHAVKVM---HDDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPF 116
G+P ++Y GMP AV++ + A+F+G+E KFNR+G+NW+D++PTK G YEIP
Sbjct: 61 GFPILKYFEGMPQAVRMAGSWQGKDKEARFIGVECKFNRQGNNWLDLIPTKGGSDYEIPL 120
Query: 117 KGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASR 176
+G + D+WVWGAGY Y++E LVRDC GR H L +G ++F+GWKN+ V+VPT+IPQ SR
Sbjct: 121 RGVVSGFDVWVWGAGYQYSLEALVRDCTGRVHTLLIGNLDFQGWKNLSVSVPTHIPQTSR 180
Query: 177 YIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDGYELADQSFDGE 233
Y+G+ ++FV FRIRT+P ERVD F +FFD+FKAL ++++D YDG+EL + F E
Sbjct: 181 YLGSAQHLSFVGFRIRTSPSERVDDFYVFFDQFKALANMHIDFYDGHELRNAQFKEE 237
>gi|15639650|ref|NP_219100.1| outer membrane protein, putative [Treponema pallidum subsp.
pallidum str. Nichols]
gi|3322962|gb|AAC65636.1| outer membrane protein, putative [Treponema pallidum subsp.
pallidum str. Nichols]
Length = 242
Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats.
Identities = 121/237 (51%), Positives = 168/237 (70%), Gaps = 4/237 (1%)
Query: 1 MKHGGLVFAGIALMLLFAFAPLTAQQGSINYQTYMVDTFDNP-DGQDWAYQAVGSKFITE 59
MK G + AG AL F +PL AQ+ +NYQ Y +D FD + Q A++A GSKFIT+
Sbjct: 1 MKQGCFMVAGFALTCAFLVSPLAAQRSKVNYQAYFIDDFDGASEDQGLAWRAAGSKFITK 60
Query: 60 GYPKVQYLNGMPHAVKVM---HDDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPF 116
G+P ++Y GMP AV++ + A+F+G+E KFNR+G+NW+D++PTK G YEIP
Sbjct: 61 GFPILKYFEGMPQAVRMAGSWQGKDKEARFIGVECKFNRQGNNWLDLIPTKGGSDYEIPL 120
Query: 117 KGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASR 176
+G + D+WVWGAGY Y++E LVRDC GR H L +G ++F+GWKN+ V+VPT+IPQ SR
Sbjct: 121 RGVVSGFDVWVWGAGYQYSLEALVRDCTGRVHTLLIGNLDFQGWKNLSVSVPTHIPQTSR 180
Query: 177 YIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDGYELADQSFDGE 233
Y+G+ ++FV FRIRT P ERVD F +FFD+FKAL ++++D YDG+EL + F E
Sbjct: 181 YLGSAQHLSFVGFRIRTXPSERVDDFYVFFDQFKALANMHIDFYDGHELRNAQFKEE 237
>gi|2108244|gb|AAB63367.1| FlaA homolog-1 [Treponema pallidum]
Length = 243
Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats.
Identities = 120/238 (50%), Positives = 169/238 (71%), Gaps = 5/238 (2%)
Query: 1 MKHGGLVFAGIALMLLFAFAPLTAQQGSINYQTYMVDTFDNP-DGQDWAYQAVGSKFITE 59
MK G + AG AL F +PL AQ+ +NYQ Y +D FD + Q A++A GSKFIT+
Sbjct: 1 MKQGCFMVAGFALTCAFLVSPLAAQRSKVNYQAYFIDDFDGASEDQGLAWRAAGSKFITK 60
Query: 60 GYPKVQYLNGMPHAVKVM---HDDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPF 116
G+P ++Y GMP AV++ + A+F+G+E KFNR+G+NW+D++PTK G YEIP
Sbjct: 61 GFPILKYFEGMPQAVRMAGSWQGKDKEARFIGVECKFNRQGNNWLDLIPTKGGSDYEIPL 120
Query: 117 KGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASR 176
+G + D+WVWGAGY Y++E LVRDC GR H L +G ++F+GWKN+ V+VPT+IPQ SR
Sbjct: 121 RGVVSGFDVWVWGAGYQYSLEALVRDCTGRVHTLLIGNLDFQGWKNLSVSVPTHIPQTSR 180
Query: 177 YIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVD-SYDGYELADQSFDGE 233
Y+G+ ++FV FRIRT+P ERVD F +FFD+FKAL ++++D + DG+EL + F E
Sbjct: 181 YLGSAQHLSFVGFRIRTSPSERVDDFYVFFDQFKALANMHIDFTIDGHELRNAQFKEE 238
>gi|116328973|ref|YP_798693.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330419|ref|YP_800137.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121717|gb|ABJ79760.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124108|gb|ABJ75379.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 316
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 63 KVQYLNGMPHAVKVMHDDAENAKFLGLEFKFNRKGDNWVDVVPT---------------- 106
+V+ + G P +K + DA AK LG++F+F GDN V + P
Sbjct: 102 EVKLIAGKPGDIKNV--DAGTAKVLGVKFQFTYPGDNSVTIRPPRVPEYEVLRTKSYLDA 159
Query: 107 ----KDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKN 162
K K Y + F G + +WV G G YN+E + D +G TH L G ++F GW+
Sbjct: 160 NNQRKVSKIYGVEFPGVSKAISVWVCGRGNEYNLEGWIEDWKGDTHILQFGSLDFIGWRP 219
Query: 163 MHVTVPTNIPQASRYIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDG 222
+ V +P +PQ + F F+IR+ P ++ +FFDE + L+DV+ +DG
Sbjct: 220 LTVGIPQGVPQDVNSYPQVKTIVFKQFKIRSRPDTSGETVYLFFDELRVLSDVFEVHFDG 279
Query: 223 YELADQSFDGE 233
A FD E
Sbjct: 280 ---ASIDFDDE 287
>gi|24216078|ref|NP_713559.1| flagellar filament outer layer protein A [Leptospira interrogans
serovar Lai str. 56601]
gi|24197316|gb|AAN50577.1|AE011497_3 flagellar filament outer layer protein A [Leptospira interrogans
serovar Lai str. 56601]
Length = 325
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 63 KVQYLNGMPHAVKVMHDDAENAKFLGLEFKFNRKGDNWVDVVP----------------- 105
+V+ ++G P +K + DA AK LG++F+F G+N V + P
Sbjct: 112 EVKLISGKPGDIKNV--DAGTAKVLGVKFQFTYPGENAVTIRPPRIPEYEILRTKAYLDA 169
Query: 106 ---TKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKN 162
K K Y + F G + +WV G G YN+E + D +G TH L G ++F GW+
Sbjct: 170 NNQKKVSKIYGVEFPGVSKAMSVWVCGRGNEYNLEGWIEDWKGDTHILQFGSLDFIGWRP 229
Query: 163 MHVTVPTNIPQASRYIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDG 222
+ V +P +PQ + F F++R+ P ++ +FFDE + L+DV+ +DG
Sbjct: 230 LTVYIPQGVPQDVNSYPQVKTIVFKQFKVRSRPDTSGETVYLFFDELRVLSDVFEVHFDG 289
Query: 223 YELADQSFDGE 233
A FD E
Sbjct: 290 ---ASIDFDDE 297
>gi|45656681|ref|YP_000767.1| flagellar filament sheath protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45599917|gb|AAS69404.1| flagellar filament sheath protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 315
Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Query: 63 KVQYLNGMPHAVKVMHDDAENAKFLGLEFKFNRKGDNWVDVVP----------------- 105
+V+ ++G P +K + DA AK LG++F+F G+N V + P
Sbjct: 102 EVKLISGKPGDIKNV--DAGTAKVLGVKFQFTYPGENAVTIRPPRIPEYEILRTKAYLDA 159
Query: 106 ---TKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKN 162
K K Y + F G + +WV G G YN+E + D +G TH L G ++F GW+
Sbjct: 160 NNQKKVSKIYGVEFPGVSKAMSVWVCGRGNEYNLEGWIEDWKGDTHILQFGSLDFIGWRP 219
Query: 163 MHVTVPTNIPQASRYIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVYVDSYDG 222
+ V +P +PQ + F F++R+ P ++ +FFDE + L+DV+ +DG
Sbjct: 220 LTVYIPQGVPQDVNSYPQVKTIVFKQFKVRSRPDTSGETVYLFFDELRVLSDVFEVHFDG 279
Query: 223 YELADQSFDGE 233
A FD E
Sbjct: 280 ---ASIDFDDE 287
>gi|15639651|ref|NP_219101.1| flagellar filament outer layer protein (flaA-2) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|3322963|gb|AAC65637.1| flagellar filament outer layer protein (flaA-2) [Treponema pallidum
subsp. pallidum str. Nichols]
Length = 241
Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 59 EGYPKVQYLNGMPHAVKVMHDDAE----NAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEI 114
EG K + G P + + ++ + ++K G + F R+G N +V K +
Sbjct: 64 EGTIKGRLFEGGPARKRPIPEEGDMKIPDSKVFGAKVSFYRRGYNSFEVSSVK-----PL 118
Query: 115 PFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVP------ 168
P +G + +WV G GY +++ +L+ D G+ L +G ++F GWK M V +P
Sbjct: 119 PVEGVAKTVSVWVAGRGYPHSLSLLLEDFWGQRFELHMGQLDFSGWKLMSVAIPPQHVDG 178
Query: 169 -TNIPQASRYIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVY-VDSYDGYELA 226
T I Q SR N++ + V FR+ P E ++ ++FD+ + +TD+Y V+S + +++
Sbjct: 179 KTGIVQKSRRFPNQSGLNIVGFRVDCDPLEAYGNYYVYFDDLRVVTDLYDVESREPDDMS 238
Query: 227 D 227
D
Sbjct: 239 D 239
>gi|2108245|gb|AAB63368.1| FlaA homolog-2 [Treponema pallidum]
Length = 234
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 36 VDTFDNPDGQDWAYQAVGSKFITEGYPKVQYLNGMPHAVKVMHDDAE----NAKFLGLEF 91
VD F+N W V S EG K + G P + + ++ + ++K G +
Sbjct: 47 VDKFENEG--TW----VVSMSSDEGTIKGRLFEGGPARKRPIPEEGDMKIPDSKVFGAKV 100
Query: 92 KFNRKGDNWVDVVPTKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALP 151
F R+G N +V K +P + + + +WV G GY +++ +L+ D G+ L
Sbjct: 101 SFYRRGYNSFEVSSVK-----PLPLRVSQKTVSVWVAGRGYPHSLSLLLEDFWGQRFELH 155
Query: 152 LGYVNFKGWKNMHVTVP-------TNIPQASRYIGNKNKMTFVAFRIRTAPFERVDSFKI 204
+G ++F GWK M V +P T I Q SR N++ + V FR+ P E ++ +
Sbjct: 156 MGQLDFSGWKLMSVAIPPQHVDGKTGIVQKSRRFPNQSGLNIVGFRVDCDPLEAYGNYYV 215
Query: 205 FFDEFKALTDVY 216
+FD+ + +TD+Y
Sbjct: 216 YFDDLRVVTDLY 227
>gi|42526917|ref|NP_972015.1| flagellar filament outer layer protein FlaA, putative [Treponema
denticola ATCC 35405]
gi|41817232|gb|AAS11926.1| flagellar filament outer layer protein FlaA, putative [Treponema
denticola ATCC 35405]
Length = 246
Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 110/244 (45%), Gaps = 36/244 (14%)
Query: 13 LMLLFAFAPLT-AQQGSINYQTYMVDTFD-NPDGQDWAYQAVGS----KFITEG------ 60
++ L F + AQQ + ++ T +D D N G D A Q + KF TEG
Sbjct: 8 ILFLVGFVAFSFAQQNNNDFST--IDAADPNKVGVDTAEQRIKEVSIEKFETEGTWYAMM 65
Query: 61 -----YPKVQYLNGMPHAVKVMHDDA----ENAKFLGLEFKFNRKGDNWVDVVPTKDGKP 111
+ + NG P K + + + K LG++ F R+G N +V TK
Sbjct: 66 SADEGVVRARLFNGNPLNKKPIPAEEGLELADEKVLGVKVSFYRRGYNSFEVHATK---- 121
Query: 112 YEIPFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTHALPLGYVNFKGWKNMHVTVP--- 168
+P +G +WV G Y + ++++V D G+ L +G +N GWK M V +P
Sbjct: 122 -ALPVEGIAKTASVWVVGRSYPHTMKLIVEDFWGKRFELYVGKLNHSGWKLMTVAIPPQN 180
Query: 169 ----TNIPQASRYIGNKNKMTFVAFRIRTAPFERVDSFKIFFDEFKALTDVY-VDSYDGY 223
T I Q + G + V FR+ P E + I+FD+ + ++D+Y VD D
Sbjct: 181 AAGKTGIIQKDYHYGTSMGLKIVGFRVECDPEEAYGHYYIYFDDLRVVSDLYEVDMRDQD 240
Query: 224 ELAD 227
+++D
Sbjct: 241 DMSD 244
>gi|116328974|ref|YP_798694.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116121718|gb|ABJ79761.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 239
Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 79 DDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEI 138
D E LG++ + +G + V+V P P+E KG +L +W G + + +
Sbjct: 94 DQIEKNHILGVKTNYTVRGFDRVEVFP-----PHEYVIKGKARQLSIWALGRKFRHTLFA 148
Query: 139 LVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASRYIGNKNKMTFVAFRIRTAPFER 198
+RD G TH + LG +++ GW+ + T+P +PQ++R+ + FV+ + + E
Sbjct: 149 KLRDYRGNTHNIRLGRLDYFGWRKLTATIPGYVPQSTRFALLDKNLHFVSIFVVSDVHEV 208
Query: 199 VDSFKIFFDEFKALTDVYVDSYDGYELAD 227
F + D+ + D Y G E+ D
Sbjct: 209 GGQFYFYVDDLEVRADKSDAKYPGSEIKD 237
>gi|116330418|ref|YP_800136.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116124107|gb|ABJ75378.1| Endoflagellar filament sheath protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 239
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 79 DDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEI 138
D E LG++ + +G + V+V P P+E KG +L +W G + + +
Sbjct: 94 DQIEKNHILGVKTNYTVRGFDRVEVFP-----PHEYVVKGKARQLSIWALGRKFRHTLFA 148
Query: 139 LVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASRYIGNKNKMTFVAFRIRTAPFER 198
+RD G TH + LG +++ GW+ + T+P +PQ++R+ + FV+ + + E
Sbjct: 149 KLRDYRGNTHNIRLGRLDYFGWRKLTATIPGYVPQSTRFALLDKNLHFVSIFVVSDVHEV 208
Query: 199 VDSFKIFFDEFKALTDVYVDSYDGYELAD 227
F + D+ + D Y G E+ D
Sbjct: 209 GGQFYFYVDDLEVRADKSDAKYPGSEIKD 237
>gi|24216079|ref|NP_713560.1| flagellar filament outer layer protein A [Leptospira interrogans
serovar Lai str. 56601]
gi|45656680|ref|YP_000766.1| flagellar filament sheath protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24197317|gb|AAN50578.1|AE011497_4 flagellar filament outer layer protein A [Leptospira interrogans
serovar Lai str. 56601]
gi|45599916|gb|AAS69403.1| flagellar filament sheath protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 239
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 79 DDAENAKFLGLEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEI 138
D E LG++ + +G + V+V P P+E KG +L +W G + + +
Sbjct: 94 DQIEKNHILGVKTNYTVRGFDRVEVFP-----PHEYVVKGKARQLSIWALGRKFRHTLFA 148
Query: 139 LVRDCEGRTHALPLGYVNFKGWKNMHVTVPTNIPQASRYIGNKNKMTFVAFRIRTAPFER 198
+RD G TH + LG +++ GW+ + T+P +PQ++R+ + FV+ + + E
Sbjct: 149 KLRDYRGNTHNIRLGRLDYFGWRKLTATIPGFVPQSTRFALLDKNLHFVSLFVVSDVHEV 208
Query: 199 VDSFKIFFDEFKALTDVYVDSYDGYELAD 227
F + D+ + D Y G E+ D
Sbjct: 209 GGQFYFYVDDLEVRADKSDAKYPGSEIKD 237
>gi|156742982|ref|YP_001433111.1| hypothetical protein Rcas_3039 [Roseiflexus castenholzii DSM 13941]
gi|156234310|gb|ABU59093.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
Length = 803
Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 89 LEFKFNRKGDNWVDVVPTKDGKPYEIPFKGNIHRLDMWVWGAGYYYNIEILVRDCEGRTH 148
L++ F G+++V P +P IP G+ +L +WV+G G + +++ +RD EG T
Sbjct: 394 LDYIFPGGGNDFVVFTP----RP-AIPLPGSPGQLGIWVYGDGSGHALKVWLRDAEGETL 448
Query: 149 ALPLGYVNFKGWKNMHVTVPTNIPQASRYIGNKN-----KMTFVAFRIRTAPFERVDSFK 203
LG+V GW + T+ + +R G N T VA + P R S
Sbjct: 449 QFRLGFVGSAGWSFLSTTINGQVEPYNRISGGGNLRLDFPATLVAIVLDDEPDSRSGSGS 508
Query: 204 IFFDEFKALT 213
I+ D+ A++
Sbjct: 509 IWLDDLTAIS 518
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.322 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 981,950,134
Number of Sequences: 5470121
Number of extensions: 45225748
Number of successful extensions: 75237
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 75214
Number of HSP's gapped (non-prelim): 14
length of query: 236
length of database: 1,894,087,724
effective HSP length: 129
effective length of query: 107
effective length of database: 1,188,442,115
effective search space: 127163306305
effective search space used: 127163306305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)