Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss90528	TSC-CSHL|TSC0109341		fwd/T	A/G	attcctgactacacatgaagagactgacac	taggtgccttacttaggtaggttaagtaat	09/06/00	10/10/03	108	Genomic			unknown
ss96392	TSC-CSHL|TSC0124047		rev/B	C/T	attacttaacctacctaagtaaggcaccta	gtgtcagtctcttcatgtgtagtcaggaat	09/06/00	03/31/08	108	Genomic			unknown
ss5873189	SC_JCM|NT_035080.1_81312		rev/B	C/T	attacttaacctacctaagtaaggcaccta	gtgtcagtctcttcatgtgtagtcaggaat	01/10/03	10/10/03	111	Genomic			unknown
ss10682851	BCM_SSAHASNP|chr11.NT_028310.10_4078850		rev/B	C/T	attacttaacctacctaagtaaggcaccta	gtgtcagtctcttcatgtgtagtcaggaat	06/29/03	10/10/03	116	Genomic			unknown
ss23354397	PERLEGEN|afd4647994		rev/B	C/T	attacttaacctacctaagtaaggcaccta	gtgtcagtctcttcatgtgtagtcaggaat	08/10/04	09/13/04	123	Genomic			unknown
ss66366797	AFFY|SNP_A-2007246		rev/B	C/T	ctaagtaaggcaccta	gtgtcagtctcttcat	10/29/06	03/31/08	127	Genomic			unknown
ss69307515	PERLEGEN|PGP04647994		rev/B	C/T	attacttaacctacctaagtaaggcaccta	gtgtcagtctcttcatgtgtagtcaggaat	01/30/07	03/31/08	127	Genomic			unknown
ss75127128	ILLUMINA|ILMN_Human_1M_rs3863292		fwd/T	A/G	attcctgactacacatgaagagactgacac	taggtgccttacttaggtaggttaagtaat	08/28/07	08/29/07	129	Genomic			unknown
ss76090277	AFFY|AFFY_6_1M_SNP_A-2007246		rev/B	C/T	ctaagtaaggcaccta	gtgtcagtctcttcat	08/28/07	08/29/07	129	Genomic			unknown

Fasta sequence   (Legend)

 CTCACCATGA GTTCAGTATA TAATTGTAAC AGAATAAAAA ATCAATTATG TATTCAAGTT
 GCTAGtgtct taagaggttc acatttttat ctaactgatt atcacaaaaa tacttcgagt
 tacttttcat tataattcct gactacacat gaagagactg acac
 R
 taggtgcctt acttaggtag gttaagtaat ttatccaaaa ccacacaATG TAGAACTTAA
 GCTGATTCGG CCATAGAAAC ACAATATGTG GTATAAATGA GACAGAGGGA TTTCTCTCCT
 TCCTATGCTG TCAGATGAAT ACTGAGATAG AATATTTAGT TCATCTATCA CACATTAAAC
 GGGACTTTAC ATTTCTGTCT GTTGAAGATT TGGGTGTGGG GATAACTCAA GGTATCATAT
 CCAAGGGATG GATGAAGGCA GGTGACTCTA ACAGAAAGGG AAAGGATGTT GGCAAGGCTA
 TGTTCATGAA AGTATATGTA AAATCCACAT TAAGCTTCTT TCTGCATGCA TTGGCAATGT
 TTATGAATAA TGTGTATGTA AAAGTGTGCT GTATATTCAA AAGTGTTTCA TGTGCCTAGG
 GGTGTCAAAT ACTTTGAGTT TGTAAGTATA TACTTCTCTG TAATGTGTCT GAATATCTCT
 ATTTACTTGA TTCTCAATAA GTAGGTATCA TAGTGAACAT CTGACAAATG TTTGAGGAAC
 AATTTAGTGT TTACCTATTC ACCAAAATTT ATTAAATGCC TAATCTGTAT CAGATATACA
 ATTATCTGGC GAAATCTGTA ATTCCTAATT TAAACA

GeneView

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss23354397	AFD_EUR_PANEL	European	44	IG		0.182	0.818	0.655	0.091	0.909
	AFD_AFR_PANEL	African American	44	IG		0.455	0.545	0.200	0.227	0.773
	AFD_CHN_PANEL	Asian	48	IG			1.000			1.000
ss66366797	HapMap-CEU	European	118	GF		0.203	0.797		0.102	0.898
	HapMap-HCB	Asian	90	GF		0.022	0.978		0.011	0.989
	HapMap-JPT	Asian	90	GF		0.111	0.889		0.056	0.944
	HapMap-YRI	Sub-Saharan African	120	GF	0.150	0.433	0.417		0.367	0.633
ss69307515	HapMap-CEU	European	120	GF		0.200	0.800		0.100	0.900
	HapMap-HCB	Asian	90	GF		0.022	0.978		0.011	0.989
	HapMap-JPT	Asian	90	GF		0.089	0.911		0.044	0.956
	HapMap-YRI	Sub-Saharan African	120	GF	0.150	0.433	0.417		0.367	0.633
ss96392	HapMap-CEU	European	120	IG		0.200	0.800		0.100	0.900
	HapMap-HCB	Asian	90	IG		0.022	0.978		0.011	0.989
	HapMap-JPT	Asian	90	IG		0.089	0.911		0.044	0.956
	HapMap-YRI	Sub-Saharan African	120	IG	0.150	0.433	0.417		0.367	0.633

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN