BLASTP 2.2.17 [Aug-26-2007]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, 
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= ANA_1071 
         (238 letters)

Database: nr 
           5,470,121 sequences; 1,894,087,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68234232|ref|ZP_00573323.1|  hypothetical protein Franean...   139   1e-31
gi|108805420|ref|YP_645357.1|  hypothetical protein Rxyl_262...   105   2e-21
gi|108805415|ref|YP_645352.1|  hypothetical protein Rxyl_262...    80   9e-14

>gi|68234232|ref|ZP_00573323.1| hypothetical protein Franean1DRAFT_0891 [Frankia sp. EAN1pec]
 gi|68198170|gb|EAN12451.1| hypothetical protein Franean1DRAFT_0891 [Frankia sp. EAN1pec]
          Length = 275

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/180 (47%), Positives = 103/180 (57%), Gaps = 14/180 (7%)

Query: 56  WEIIFDGYGEASC---SEGL-LRLKPTSANSSDTTHAGLATSTTVEIEAGGVQTIHTTMT 111
           W  +FDGYG  +    + GL + L P +A++ + THAGL  S+    E        T + 
Sbjct: 90  WLAVFDGYGRTAGQLEAGGLVITLTPRTADAPERTHAGLVVSS----EHYSDVRFTTQVR 145

Query: 112 TVKQLREDGEPNAWEVAWLLWNYTDNNHFYALALKPNGWEVSKQDTAYPGYQRFLSSGNT 171
           TV+QLR  G P  WEV W+LWNYTD  HFYA ALKPNGWE+SKQD AYPG QRFL+SG  
Sbjct: 146 TVRQLRH-GTPAPWEVGWVLWNYTDPAHFYAFALKPNGWELSKQDPAYPGGQRFLASGPA 204

Query: 172 PVYPPGESHDVTVTIDTTSSSEATFTITVDGQELGTVTDKQSPYRSGTVAAYCEDSDVTF 231
           P    G  H V V  D  S       ++VDG     + D + PY SG V  YCEDS V F
Sbjct: 205 PRARLGSWHTVEVIHDRDS-----MAVSVDGVPTVRMQDTERPYVSGAVGLYCEDSVVEF 259



>gi|108805420|ref|YP_645357.1| hypothetical protein Rxyl_2628 [Rubrobacter xylanophilus DSM 9941]
 gi|108766663|gb|ABG05545.1| hypothetical protein Rxyl_2628 [Rubrobacter xylanophilus DSM 9941]
          Length = 243

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 87/185 (47%), Gaps = 14/185 (7%)

Query: 56  WEIIFDGYGEASCSE-GLLRLKPTSANSSDTTHAGLATSTTVEIEAGGVQTIHTTMTTVK 114
           W ++FDGYG A     G    +P + +S   THAGL  S     E  GV  +     TV+
Sbjct: 58  WRVVFDGYGGAGVDRRGRHYQRPAAPSSPGETHAGLVVSRG---EFAGVD-LTLRQKTVR 113

Query: 115 QLREDGEPNAWEVAWLLWNYTDNNHFYALALKPNGWEVSKQDTAYPGYQRFLSSGNTPVY 174
           QLR+   PN WEVAW++W Y DN  FY   LKPNG E+ K    YPG QRFL +  +P  
Sbjct: 114 QLRQGSPPNPWEVAWVVWGYGDNTRFYYFILKPNGVELGKAHPGYPGAQRFLYTAPSPRL 173

Query: 175 PPGESHDVTV-----TIDTTSSSEATFTITVDGQELGTVTDKQSPYRSGTVAAYCEDSDV 229
             GE + V V     TID            VD    G   D   PY  G V  Y ED+  
Sbjct: 174 SLGEWNRVRVRQVGRTIDVWVDGARVIDGFVDTP--GPAGD--GPYLEGRVGLYTEDAST 229

Query: 230 TFTPI 234
            F  +
Sbjct: 230 LFDDV 234



>gi|108805415|ref|YP_645352.1| hypothetical protein Rxyl_2623 [Rubrobacter xylanophilus DSM 9941]
 gi|108766658|gb|ABG05540.1| hypothetical protein Rxyl_2623 [Rubrobacter xylanophilus DSM 9941]
          Length = 216

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 77/178 (43%), Gaps = 11/178 (6%)

Query: 55  QWEIIFDGYGEASCSEGLLRLKPTSANSSDTTHAGLATSTTVEIEAGGVQ-TIHTTMTTV 113
           +W +++DGYG      G   L+P +  S   T A LA +     E G    T    M   
Sbjct: 38  EWGVVYDGYGRVGVEGGAAVLEPRAVGSPSRTSAALALAG----EPGWRDYTFTVRMKLD 93

Query: 114 KQLREDGEPNAWEVAWLLWNYTDNNHFYALALKPNGWEVSKQDTAYPGYQRFLSSGNTPV 173
           +QLR +  PN WE  WLL+ Y      Y LA K NG E+ K        Q FL +   P 
Sbjct: 94  RQLRRNSPPNPWESGWLLFRYAGEGRSYYLAHKTNGLELGKLVPPAGVGQEFLVTRPEPA 153

Query: 174 YPPGESHDVTVTIDTTSSSEATFTITVDGQELGTVTDKQSPYRSGTVAAYCEDSDVTF 231
             PG  +D  + +          T+ VDG+ + + TD   P   G V  Y ED+ V F
Sbjct: 154 ARPGRWYDYRIEL-----RGPRITVYVDGERVISYTDP-DPIPRGRVGLYTEDARVLF 205



  Database: nr
    Posted date:  Sep 17, 2007 11:41 AM
  Number of letters in database: 999,999,834
  Number of sequences in database:  2,976,859
  
  Database: /nucleus1/users/jsaw/ncbi/db/nr.01
    Posted date:  Sep 17, 2007 11:48 AM
  Number of letters in database: 894,087,890
  Number of sequences in database:  2,493,262
  
Lambda     K      H
   0.313    0.128    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 939,454,248
Number of Sequences: 5470121
Number of extensions: 38388440
Number of successful extensions: 76677
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76668
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 1,894,087,724
effective HSP length: 129
effective length of query: 109
effective length of database: 1,188,442,115
effective search space: 129540190535
effective search space used: 129540190535
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)