BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= STr1547
(82 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55821523|ref|YP_139965.1| hypothetical protein stu1547 [... 139 3e-32
gi|77412601|ref|ZP_00788887.1| KH domain protein [Streptoco... 123 3e-27
gi|22537504|ref|NP_688355.1| KH domain protein [Streptococc... 120 2e-26
gi|24379320|ref|NP_721275.1| hypothetical protein SMU.866 [... 116 5e-25
gi|146320645|ref|YP_001200356.1| Predicted RNA-binding prot... 112 9e-24
gi|15674876|ref|NP_269050.1| hypothetical protein SPy_0841 ... 111 1e-23
gi|77415246|ref|ZP_00791232.1| KH domain protein [Streptoco... 110 2e-23
gi|146318451|ref|YP_001198163.1| Predicted RNA-binding prot... 110 3e-23
gi|125718125|ref|YP_001035258.1| RNA-binding protein (KH do... 109 4e-23
gi|15900670|ref|NP_345274.1| KH domain protein [Streptococc... 108 7e-23
gi|157075758|gb|ABV10441.1| KH domain protein [Streptococcu... 107 2e-22
gi|15673550|ref|NP_267724.1| hypothetical protein L9737 [La... 88 1e-16
gi|116512365|ref|YP_809581.1| Predicted RNA-binding protein... 88 1e-16
gi|116333581|ref|YP_795108.1| RNA-binding protein, KH domai... 75 1e-12
gi|28378335|ref|NP_785227.1| hypothetical protein lp_1637 [... 67 3e-10
gi|29376247|ref|NP_815401.1| KH domain protein [Enterococcu... 67 3e-10
gi|81428331|ref|YP_395331.1| hypothetical protein LSA0716 [... 65 2e-09
gi|116495082|ref|YP_806816.1| RNA-binding protein, KH domai... 63 6e-09
gi|52080202|ref|YP_078993.1| hypothetical protein BL02324 [... 57 4e-07
gi|52785579|ref|YP_091408.1| YlqC [Bacillus licheniformis A... 56 7e-07
gi|90961608|ref|YP_535524.1| RNA binding protein [Lactobaci... 55 9e-07
gi|148544377|ref|YP_001271747.1| hypothetical protein Lreu_... 54 2e-06
gi|153202770|ref|ZP_01944233.1| hypothetical protein LMSG_0... 54 2e-06
gi|16800976|ref|NP_471244.1| hypothetical protein lin1910 [... 54 3e-06
>gi|55821523|ref|YP_139965.1| hypothetical protein stu1547 [Streptococcus thermophilus LMG
18311]
gi|55823451|ref|YP_141892.1| hypothetical protein str1547 [Streptococcus thermophilus
CNRZ1066]
gi|116628235|ref|YP_820854.1| Predicted RNA-binding protein (contains KH domain) [Streptococcus
thermophilus LMD-9]
gi|55737508|gb|AAV61150.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55739436|gb|AAV63077.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
gi|116101512|gb|ABJ66658.1| Predicted RNA-binding protein (contains KH domain) [Streptococcus
thermophilus LMD-9]
Length = 82
Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA
Sbjct: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
Query: 61 IVYSVPTQGKKVRLVIDEKEKA 82
IVYSVPTQGKKVRLVIDEKEKA
Sbjct: 61 IVYSVPTQGKKVRLVIDEKEKA 82
>gi|77412601|ref|ZP_00788887.1| KH domain protein [Streptococcus agalactiae CJB111]
gi|77161352|gb|EAO72377.1| KH domain protein [Streptococcus agalactiae CJB111]
Length = 83
Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats.
Identities = 69/80 (86%), Positives = 73/80 (91%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PDQLTIKI DGPEFLEYHLDL DIGRVIGKKGRTI AIR+
Sbjct: 1 MDTIENLIIAIVKPLISQPDQLTIKIQDGPEFLEYHLDLDTQDIGRVIGKKGRTITAIRS 60
Query: 61 IVYSVPTQGKKVRLVIDEKE 80
IVYSVPTQGKKVRL+IDEKE
Sbjct: 61 IVYSVPTQGKKVRLIIDEKE 80
>gi|22537504|ref|NP_688355.1| KH domain protein [Streptococcus agalactiae 2603V/R]
gi|25011469|ref|NP_735864.1| hypothetical protein gbs1427 [Streptococcus agalactiae NEM316]
gi|76787091|ref|YP_329998.1| hypothetical protein SAK_1390 [Streptococcus agalactiae A909]
gi|76797723|ref|ZP_00779991.1| KH domain protein [Streptococcus agalactiae 18RS21]
gi|22534384|gb|AAN00228.1|AE014254_8 KH domain protein [Streptococcus agalactiae 2603V/R]
gi|24413007|emb|CAD47086.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562148|gb|ABA44732.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|76586947|gb|EAO63437.1| KH domain protein [Streptococcus agalactiae 18RS21]
Length = 80
Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/80 (86%), Positives = 73/80 (91%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PDQLTIKI DGPEFLEYHLDL DIGRVIGKKGRTI AIR+
Sbjct: 1 MDTIENLIIAIVKPLISQPDQLTIKIQDGPEFLEYHLDLDTQDIGRVIGKKGRTITAIRS 60
Query: 61 IVYSVPTQGKKVRLVIDEKE 80
IVYSVPTQGKKVRL+IDEKE
Sbjct: 61 IVYSVPTQGKKVRLIIDEKE 80
>gi|24379320|ref|NP_721275.1| hypothetical protein SMU.866 [Streptococcus mutans UA159]
gi|24377243|gb|AAN58581.1|AE014928_2 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 79
Score = 116 bits (290), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/79 (83%), Positives = 70/79 (88%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PD TIKI D PEFLEYHLDL SDIGR+IGKKGRTI AIR+
Sbjct: 1 MDTIENLIIAIVKPLISQPDNFTIKIEDTPEFLEYHLDLDSSDIGRIIGKKGRTITAIRS 60
Query: 61 IVYSVPTQGKKVRLVIDEK 79
IVYSVPTQGKKVRLVIDEK
Sbjct: 61 IVYSVPTQGKKVRLVIDEK 79
>gi|146320645|ref|YP_001200356.1| Predicted RNA-binding protein (contains KH domain) [Streptococcus
suis 98HAH33]
gi|145691451|gb|ABP91956.1| Predicted RNA-binding protein (contains KH domain) [Streptococcus
suis 98HAH33]
Length = 80
Score = 112 bits (279), Expect = 9e-24, Method: Composition-based stats.
Identities = 64/80 (80%), Positives = 69/80 (86%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MD IENLIIAI+ PLI+ PD LTIKI+D PEFLEYHLDL SDIGR+IG+KGRTI AIR
Sbjct: 1 MDMIENLIIAIVKPLISQPDSLTIKIVDTPEFLEYHLDLDQSDIGRIIGRKGRTISAIRT 60
Query: 61 IVYSVPTQGKKVRLVIDEKE 80
IVYSVPT KKVRLVIDEKE
Sbjct: 61 IVYSVPTSDKKVRLVIDEKE 80
>gi|15674876|ref|NP_269050.1| hypothetical protein SPy_0841 [Streptococcus pyogenes M1 GAS]
gi|19745917|ref|NP_607053.1| hypothetical protein spyM18_0901 [Streptococcus pyogenes
MGAS8232]
gi|21910104|ref|NP_664372.1| hypothetical protein SpyM3_0568 [Streptococcus pyogenes MGAS315]
gi|28896198|ref|NP_802548.1| hypothetical protein SPs1286 [Streptococcus pyogenes SSI-1]
gi|50914014|ref|YP_059986.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
gi|56808439|ref|ZP_00366185.1| COG1837: Predicted RNA-binding protein (contains KH domain)
[Streptococcus pyogenes M49 591]
gi|71903296|ref|YP_280099.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
gi|71910462|ref|YP_282012.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|94988336|ref|YP_596437.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94990217|ref|YP_598317.1| RNA binding protein [Streptococcus pyogenes MGAS10270]
gi|94992214|ref|YP_600313.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|94994135|ref|YP_602233.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
gi|139473984|ref|YP_001128700.1| hypothetical protein SpyM51158 [Streptococcus pyogenes str.
Manfredo]
gi|13622013|gb|AAK33771.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|19748072|gb|AAL97552.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21904296|gb|AAM79175.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811449|dbj|BAC64381.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50903088|gb|AAT86803.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
gi|71802391|gb|AAX71744.1| RNA binding protein [Streptococcus pyogenes MGAS6180]
gi|71853244|gb|AAZ51267.1| RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|94541844|gb|ABF31893.1| RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94543725|gb|ABF33773.1| RNA binding protein [Streptococcus pyogenes MGAS10270]
gi|94545722|gb|ABF35769.1| RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|94547643|gb|ABF37689.1| RNA binding protein [Streptococcus pyogenes MGAS10750]
gi|134272231|emb|CAM30483.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
Length = 79
Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats.
Identities = 65/79 (82%), Positives = 69/79 (87%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PD LTIKI D P+FLEYHLDL DIGRVIGKKGRTI AIR+
Sbjct: 1 MDTIENLIIAIVKPLISQPDNLTIKIEDTPDFLEYHLDLDAQDIGRVIGKKGRTITAIRS 60
Query: 61 IVYSVPTQGKKVRLVIDEK 79
IVYSVPT GKKVRLVIDEK
Sbjct: 61 IVYSVPTLGKKVRLVIDEK 79
>gi|77415246|ref|ZP_00791232.1| KH domain protein [Streptococcus agalactiae 515]
gi|77158704|gb|EAO70029.1| KH domain protein [Streptococcus agalactiae 515]
Length = 72
Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/67 (86%), Positives = 61/67 (91%)
Query: 14 PLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVYSVPTQGKKVR 73
PLI+ PDQLTIKI DGPEFLEYHLDL DIGRVIGKKGRTI AIR+IVYSVPTQGKKVR
Sbjct: 6 PLISQPDQLTIKIQDGPEFLEYHLDLDTQDIGRVIGKKGRTITAIRSIVYSVPTQGKKVR 65
Query: 74 LVIDEKE 80
L+IDEKE
Sbjct: 66 LIIDEKE 72
>gi|146318451|ref|YP_001198163.1| Predicted RNA-binding protein (contains KH domain) [Streptococcus
suis 05ZYH33]
gi|145689257|gb|ABP89763.1| Predicted RNA-binding protein (contains KH domain) [Streptococcus
suis 05ZYH33]
Length = 80
Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/80 (78%), Positives = 68/80 (85%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MD IENLIIAI+ PLI+ PD LTIKI+D PEFLEYHLDL SDIGR+IG+KGRTI AIR
Sbjct: 1 MDMIENLIIAIVKPLISQPDSLTIKIVDTPEFLEYHLDLDQSDIGRIIGRKGRTIFAIRT 60
Query: 61 IVYSVPTQGKKVRLVIDEKE 80
IVY VPT KKVRLVIDEKE
Sbjct: 61 IVYFVPTSDKKVRLVIDEKE 80
>gi|125718125|ref|YP_001035258.1| RNA-binding protein (KH domain), putative [Streptococcus
sanguinis SK36]
gi|125498042|gb|ABN44708.1| RNA-binding protein (KH domain), putative [Streptococcus
sanguinis SK36]
Length = 79
Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats.
Identities = 63/79 (79%), Positives = 69/79 (87%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PD LTIKI D PEFLEYHLDL SD+GRVIG+KGRTI AIR
Sbjct: 1 MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLDLDQSDVGRVIGRKGRTISAIRT 60
Query: 61 IVYSVPTQGKKVRLVIDEK 79
IVYSVPT+ KKVR+VIDEK
Sbjct: 61 IVYSVPTEYKKVRIVIDEK 79
>gi|15900670|ref|NP_345274.1| KH domain protein [Streptococcus pneumoniae TIGR4]
gi|15902727|ref|NP_358277.1| hypothetical protein spr0683 [Streptococcus pneumoniae R6]
gi|111658336|ref|ZP_01409024.1| hypothetical protein SpneT_02000476 [Streptococcus pneumoniae
TIGR4]
gi|116515603|ref|YP_816169.1| hypothetical protein SPD_0675 [Streptococcus pneumoniae D39]
gi|148985874|ref|ZP_01818968.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP3-BS71]
gi|148989857|ref|ZP_01821151.1| hypothetical protein CGSSp6BS73_01683 [Streptococcus pneumoniae
SP6-BS73]
gi|148992439|ref|ZP_01822134.1| hypothetical protein CGSSp9BS68_08472 [Streptococcus pneumoniae
SP9-BS68]
gi|148997147|ref|ZP_01824801.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP11-BS70]
gi|149003396|ref|ZP_01828285.1| hypothetical protein CGSSp14BS69_05307 [Streptococcus pneumoniae
SP14-BS69]
gi|149007657|ref|ZP_01831274.1| hypothetical protein CGSSp18BS74_04176 [Streptococcus pneumoniae
SP18-BS74]
gi|149010597|ref|ZP_01831968.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP19-BS75]
gi|149021641|ref|ZP_01835672.1| hypothetical protein CGSSp23BS72_07885 [Streptococcus pneumoniae
SP23-BS72]
gi|14972251|gb|AAK74914.1| KH domain protein [Streptococcus pneumoniae TIGR4]
gi|15458271|gb|AAK99487.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076179|gb|ABJ53899.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
gi|147756847|gb|EDK63887.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP11-BS70]
gi|147758579|gb|EDK65577.1| hypothetical protein CGSSp14BS69_05307 [Streptococcus pneumoniae
SP14-BS69]
gi|147760812|gb|EDK67783.1| hypothetical protein CGSSp18BS74_04176 [Streptococcus pneumoniae
SP18-BS74]
gi|147765078|gb|EDK72007.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP19-BS75]
gi|147922020|gb|EDK73144.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP3-BS71]
gi|147924799|gb|EDK75883.1| hypothetical protein CGSSp6BS73_01683 [Streptococcus pneumoniae
SP6-BS73]
gi|147928756|gb|EDK79769.1| hypothetical protein CGSSp9BS68_08472 [Streptococcus pneumoniae
SP9-BS68]
gi|147930102|gb|EDK81088.1| hypothetical protein CGSSp23BS72_07885 [Streptococcus pneumoniae
SP23-BS72]
Length = 79
Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats.
Identities = 62/79 (78%), Positives = 69/79 (87%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PD LTIKI D PEFLEYHL+L SD+GRVIG+KGRTI AIR
Sbjct: 1 MDTIENLIIAIVKPLISQPDALTIKIEDTPEFLEYHLNLDQSDVGRVIGRKGRTISAIRT 60
Query: 61 IVYSVPTQGKKVRLVIDEK 79
IVYSVPT+ KKVR+VIDEK
Sbjct: 61 IVYSVPTEYKKVRIVIDEK 79
>gi|157075758|gb|ABV10441.1| KH domain protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 79
Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 69/79 (87%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
MDTIENLIIAI+ PLI+ PD LTI+I D PEF+EYHLDL +D+GRVIG+KGRTI AIR
Sbjct: 1 MDTIENLIIAIVKPLISQPDALTIRIEDTPEFMEYHLDLDQTDVGRVIGRKGRTISAIRT 60
Query: 61 IVYSVPTQGKKVRLVIDEK 79
IVYSVPT+ KKVR+VIDEK
Sbjct: 61 IVYSVPTEDKKVRIVIDEK 79
>gi|15673550|ref|NP_267724.1| hypothetical protein L9737 [Lactococcus lactis subsp. lactis
Il1403]
gi|12724571|gb|AAK05666.1|AE006387_9 UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis Il1403]
Length = 79
Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 63/75 (84%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
++ L++ I+ PL+T PD++++++I+G EF+EYHL +A DIGR+IG++GR I+AIR +VY
Sbjct: 5 VKELVLTIVKPLVTQPDEVSLELIEGEEFMEYHLKVAEGDIGRIIGRQGRIIQAIRTVVY 64
Query: 64 SVPTQGKKVRLVIDE 78
VP +GKKVRL++D+
Sbjct: 65 FVPVEGKKVRLLVDQ 79
>gi|116512365|ref|YP_809581.1| Predicted RNA-binding protein, KH domain [Lactococcus lactis
subsp. cremoris SK11]
gi|125623774|ref|YP_001032257.1| Putative RNA binding protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|116108019|gb|ABJ73159.1| Predicted RNA-binding protein, KH domain [Lactococcus lactis
subsp. cremoris SK11]
gi|124492582|emb|CAL97527.1| Putative RNA binding protein [Lactococcus lactis subsp. cremoris
MG1363]
Length = 79
Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 63/75 (84%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
++ L++ I+ PL+T PD+++++II+G EF+EYHL +A DIGR+IG++GR I+AIR +VY
Sbjct: 5 VKELVLTIVKPLVTQPDEVSLEIIEGEEFMEYHLKVADGDIGRIIGRQGRIIQAIRTVVY 64
Query: 64 SVPTQGKKVRLVIDE 78
VP +GKKVRL++D+
Sbjct: 65 FVPVEGKKVRLLVDQ 79
>gi|116333581|ref|YP_795108.1| RNA-binding protein, KH domain [Lactobacillus brevis ATCC 367]
gi|116098928|gb|ABJ64077.1| RNA-binding protein, KH domain [Lactobacillus brevis ATCC 367]
Length = 86
Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
M + LI+AI++PL+ P+ L I ++ F EY L + P DIGRVIGK+GR +AIR
Sbjct: 1 MTDFKGLILAIVSPLVEHPEDLVITPVETERFYEYRLAVNPDDIGRVIGKQGRVAQAIRT 60
Query: 61 IVYSVPTQG-KKVRLVIDEK 79
IVYSV QG K+VRL+ID++
Sbjct: 61 IVYSVRVQGNKRVRLIIDDR 80
>gi|28378335|ref|NP_785227.1| hypothetical protein lp_1637 [Lactobacillus plantarum WCFS1]
gi|28271170|emb|CAD64075.1| unknown [Lactobacillus plantarum WCFS1]
Length = 85
Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
M I+ LI ++ PL+ PD + + + +LEY+L + P DIGRVIG++GR AIR
Sbjct: 1 MADIKALITTVVTPLVQYPDDIKVDFKETTRYLEYNLTVNPEDIGRVIGRQGRVASAIRT 60
Query: 61 IVYSVPTQG-KKVRLVIDEKEK 81
IVYSV G K+VRL I++ ++
Sbjct: 61 IVYSVRVSGPKRVRLTIEDGQQ 82
>gi|29376247|ref|NP_815401.1| KH domain protein [Enterococcus faecalis V583]
gi|29343710|gb|AAO81471.1| KH domain protein [Enterococcus faecalis V583]
Length = 78
Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
++ LI+ I+ PL++ P+ ++++I + +FLEY+L +A DIGR+IGK+GR KAIR IVY
Sbjct: 1 MKELILTIVRPLVSQPEAVSLEIEESTDFLEYNLTVAKEDIGRIIGKQGRVAKAIRTIVY 60
Query: 64 SVPTQG-KKVRLVI 76
SV G KKVRL I
Sbjct: 61 SVRIDGPKKVRLNI 74
>gi|81428331|ref|YP_395331.1| hypothetical protein LSA0716 [Lactobacillus sakei subsp. sakei
23K]
gi|78609973|emb|CAI55020.1| Hypothetical protein [Lactobacillus sakei subsp. sakei 23K]
Length = 80
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
M ++ LIIAI+ PL+ PD + + + F+E+ L + PSDIGR+IGK+GR ++IR
Sbjct: 1 MTDVKELIIAIVQPLVEHPDDVKLTEHETERFMEFDLQVNPSDIGRIIGKQGRVAQSIRT 60
Query: 61 IVYSVPTQ-GKKVRLVI 76
IVYSV T K+VRL I
Sbjct: 61 IVYSVKTPYQKRVRLNI 77
>gi|116495082|ref|YP_806816.1| RNA-binding protein, KH domain [Lactobacillus casei ATCC 334]
gi|116105232|gb|ABJ70374.1| RNA-binding protein, KH domain [Lactobacillus casei ATCC 334]
Length = 84
Score = 62.8 bits (151), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 1 MDTIENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRA 60
M I +LI AI+ PL+T P+ + + + +++ + L +AP D+GRVIGK+GR +AIR
Sbjct: 1 MVDIGSLIQAIVTPLVTQPEAVKVTAHETGDYMAFDLAVAPEDVGRVIGKQGRVAQAIRT 60
Query: 61 IVYSVPTQ-GKKVRLVIDEKEKA 82
IVYSV + K+VRL I + A
Sbjct: 61 IVYSVKSPYNKRVRLNILDASHA 83
>gi|52080202|ref|YP_078993.1| hypothetical protein BL02324 [Bacillus licheniformis ATCC 14580]
gi|52003413|gb|AAU23355.1| conserved hypothetical protein [Bacillus licheniformis ATCC
14580]
Length = 81
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
+E LI++++ PL+ PD + + + PE + + L + D G++IGKKGRT +AIR++V+
Sbjct: 6 LEELIVSLVKPLVDHPDDVQVFKEENPERIMFRLSVNREDTGKIIGKKGRTARAIRSVVF 65
Query: 64 SVPTQ-GKKVRLVI 76
+ Q KKV+L I
Sbjct: 66 AAGAQSSKKVQLEI 79
>gi|52785579|ref|YP_091408.1| YlqC [Bacillus licheniformis ATCC 14580]
gi|52348081|gb|AAU40715.1| YlqC [Bacillus licheniformis DSM 13]
Length = 76
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
+E LI++++ PL+ PD + + + PE + + L + D G++IGKKGRT +AIR++V+
Sbjct: 1 MEELIVSLVKPLVDHPDDVQVFKEENPERIMFRLSVNREDTGKIIGKKGRTARAIRSVVF 60
Query: 64 SVPTQ-GKKVRLVI 76
+ Q KKV+L I
Sbjct: 61 AAGAQSSKKVQLEI 74
>gi|90961608|ref|YP_535524.1| RNA binding protein [Lactobacillus salivarius subsp. salivarius
UCC118]
gi|90820802|gb|ABD99441.1| RNA binding protein [Lactobacillus salivarius subsp. salivarius
UCC118]
Length = 81
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
++ LI+ I+ PL+ PD++ I+ FL ++L ++ D+GRVIGK GR +AIR IVY
Sbjct: 6 VKQLILTIVQPLVAEPDEVKIETEQDDYFLNFNLSVSKEDVGRVIGKHGRIAQAIRNIVY 65
Query: 64 SVPTQGK-KVRLVI 76
+ KVRL I
Sbjct: 66 GIRLDNNLKVRLNI 79
>gi|148544377|ref|YP_001271747.1| hypothetical protein Lreu_1153 [Lactobacillus reuteri F275]
gi|148531411|gb|ABQ83410.1| hypothetical protein Lreu_1153 [Lactobacillus reuteri F275]
Length = 86
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
IE+LI +++ PL+ P L+I D + Y +D+AP+D+GR+IG++G A+R IV
Sbjct: 6 IESLIRSLVIPLLKQPQALSITQKDDGRYHRYIIDVAPNDVGRLIGRQGHVAAALRTIVE 65
Query: 64 SVPTQ---GKKVRLVIDE 78
++ K+VRL+I++
Sbjct: 66 GTQSRRANSKRVRLLIND 83
>gi|153202770|ref|ZP_01944233.1| hypothetical protein LMSG_02846 [Listeria monocytogenes HPB2262]
gi|133735088|gb|EBA36786.1| hypothetical protein LMSG_02846 [Listeria monocytogenes HPB2262]
Length = 76
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
+E LI++I+ PL+ P+ + I + L Y L ++ D+GRVIGK+GR KAIR +VY
Sbjct: 1 MEELILSIVKPLVGHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVY 60
Query: 64 SVPTQG-KKVRLVIDE 78
+V ++ KK+RL I E
Sbjct: 61 AVGSKNDKKIRLEIIE 76
>gi|16800976|ref|NP_471244.1| hypothetical protein lin1910 [Listeria innocua Clip11262]
gi|16803836|ref|NP_465321.1| hypothetical protein lmo1796 [Listeria monocytogenes EGD-e]
gi|46908028|ref|YP_014417.1| hypothetical protein LMOf2365_1823 [Listeria monocytogenes str.
4b F2365]
gi|116873231|ref|YP_850012.1| hypothetical protein lwe1815 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|153167605|ref|ZP_01927745.1| hypothetical protein LMHG_02874 [Listeria monocytogenes FSL
N1-017]
gi|153175003|ref|ZP_01930424.1| hypothetical protein LMIG_02820 [Listeria monocytogenes FSL
N3-165]
gi|153179820|ref|ZP_01933010.1| hypothetical protein LMMG_02883 [Listeria monocytogenes F6900]
gi|153186697|ref|ZP_01936902.1| hypothetical protein LMOG_02877 [Listeria monocytogenes J0161]
gi|153191278|ref|ZP_01938526.1| hypothetical protein LMPG_02923 [Listeria monocytogenes J2818]
gi|153198552|ref|ZP_01942523.1| hypothetical protein LMRG_02820 [Listeria monocytogenes 10403S]
gi|54040377|sp|P67235|Y1910_LISIN UPF0109 protein lin1910
gi|54042673|sp|P67234|Y1796_LISMO UPF0109 protein lmo1796
gi|67462056|sp|Q71YM0|Y1823_LISMF UPF0109 protein LMOf2365_1823
gi|16411250|emb|CAC99874.1| lmo1796 [Listeria monocytogenes]
gi|16414411|emb|CAC97140.1| lin1910 [Listeria innocua]
gi|46881298|gb|AAT04594.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
F2365]
gi|116742109|emb|CAK21233.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|126940984|gb|EBA18887.1| hypothetical protein LMOG_02877 [Listeria monocytogenes J0161]
gi|127631931|gb|EBA21656.1| hypothetical protein LMRG_02820 [Listeria monocytogenes 10403S]
gi|127765315|gb|EBA25664.1| hypothetical protein LMPG_02923 [Listeria monocytogenes J2818]
gi|133726884|gb|EBA28582.1| hypothetical protein LMHG_02874 [Listeria monocytogenes FSL
N1-017]
gi|133729786|gb|EBA31484.1| hypothetical protein LMIG_02820 [Listeria monocytogenes FSL
N3-165]
gi|133732554|gb|EBA34252.1| hypothetical protein LMMG_02883 [Listeria monocytogenes F6900]
Length = 76
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 4 IENLIIAIINPLITSPDQLTIKIIDGPEFLEYHLDLAPSDIGRVIGKKGRTIKAIRAIVY 63
+E LI++I+ PL+ P+ + I + L Y L ++ D+GRVIGK+GR KAIR +VY
Sbjct: 1 MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVY 60
Query: 64 SVPTQG-KKVRLVIDE 78
+V ++ KK+RL I E
Sbjct: 61 AVGSKNDKKIRLEIIE 76
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.142 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,970,989
Number of Sequences: 5470121
Number of extensions: 10505234
Number of successful extensions: 25567
Number of sequences better than 1.0e-05: 49
Number of HSP's better than 0.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 25525
Number of HSP's gapped (non-prelim): 49
length of query: 82
length of database: 1,894,087,724
effective HSP length: 53
effective length of query: 29
effective length of database: 1,604,171,311
effective search space: 46520968019
effective search space used: 46520968019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)